Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001982

Physical Location & Seq

Genomic Coordinates Forward (+)

9364183 .. 9373627

Gene Structure 9445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG119300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGATCATTCTTCTCTAATGTCCAAGCCTGAGATTCTTGTGCAGCATATTATTTGGGCAGAAGCACATCAGAAGAGTTTGTGTGACATTGAGAAATACCTACTTAGTGGTGCACATGGTGGTGAGGTTCAACTTGAAGCTGTTAAGGTATCATATGTAGATGAAAAGCTGAGGCAGTACCAGAATGAGATTGTGTCCATTATACACAAATACTTGCTCTCGGATGATATTCTCAAGCTTATTCAAAGCCTTGAAGATCTTGCGGTACCTGAGTACAATCCCATATTTTTGAAGAAGCTGATCACACTTGCAGTAGATGGAAAGAACCTTGGAAAGGAAATGGCATCTGTTCTGCTTTCTGCGCTTCATATTGAGCTCTTCTCGACTGAGGACATAGTTAATGGATTTGTCTTGCTTCTGAAATCTGCAGATGATACAAAATTGGACATCTTGGATGCTTCAAATGAGCTTGCTTTCTTTCTAGCCAGGGCCGTGATCGATGATGTGTTGGCTCCGCTGAATTTGGAAGAAATTGGCAGCAGGCATCATGCTGGTGAATATGTGAGGCAGTACAAGTCCATAATTCAAGAATACTTTTTCTCGGATGATATTCCCGTGCTCATTCAACGCCTTAAAGATCTTGCGGTACCCGAGCATAATCCCATTTTTGTGAAGAAGTTGATCATACTTGCAATGGATGGAAAGAACCGTGAAAAGGAAATGGCTTCCGTTCTACTTTCTTCCCTTCATATTGAGATCTTCTCGACCGAGGACATAGTTAATGGATTTGTCTTGCTTCTTGAATCTGCTGAGGATTCAGAATTGGGCATCTTGGATGCTTCAAATGAGTGTGCTCTCTATCTGGCCCGGGCTGTGGTTGATGATGTATTGTCTCCACTGAAGTTGGAAGAAATTGGCAGCAGGTTGCCACCAAATTGCAGTGCAACTGTGACTGTGCGAATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05205 ko05206 map05205 map05206

Pfam Domains

Protein Families

MA3

Protein Analysis

322

Amino Acids

35.95

Weight (kDa)

4.78

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MA3	PF02847	61 - 170	6.2e-21	MA3 domain
MA3	PF02847	189 - 297	1.5e-20	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48390 AT4G24800 AT4G24800 AT4G24800 AT4G24800 AT5G63190 AT5G63190
fragaria_vesca	FvH4_5g07020
malus_domestica	MD06G1160300.v1.1 MD14G1166300.v1.1
prunus_persica	Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1
pyrus_communis	pycom14g13890
rosa_chinensis	RchiOBHm_Chr7g0191511 RchiOBHm_Chr7g0191601 RchiOBHm_Chr7g0191611 RchiOBHm_Chr7g0191661
rosa_laevigata	RLG00000004436 RLG00000004439 RLG00000004442
rosa_multiflora	Rmu_sc0001123.1_g000008 Rmu_sc0003634.1_g000005 Rmu_sc0010599.1_g000004 Rmu_sc0010599.1_g000006 Rmu_sc0018698.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438450 Rroxscaffold_157G00438480 Rroxscaffold_3G00263670 Rroxscaffold_3G00263720
rosa_rugosa	Rorug06G0510500 Rorug06G0510700
rosa_samantha	Rh7AG119000 Rh7AG119300 Rh7AG119600 Rh7BG121500 Rh7BG121800 Rh7CG123800 Rh7CG124200 Rh7CG124600 Rh7DG121900 Rh7DG122400 Rh7DG122600
rosa_wichuraiana	Rw7G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	912
Acc65I	GGTACC	2 cut(s)	265, 646
AccB1I	GGYRCC	2 cut(s)	265, 646
AciI	CCGC	3 cut(s)	263, 515, 644
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	920
AdeI	CACNNNGTG	1 cut(s)	119
AfaI	GTAC	5 cut(s)	179, 267, 275, 572, 648
AfiI	CCNNNNNNNGG	3 cut(s)	334, 715, 874
AjnI	CCWGG	1 cut(s)	485
AluBI	AGCT	6 cut(s)	140, 169, 238, 298, 376, 469
AluI	AGCT	6 cut(s)	140, 169, 238, 298, 376, 469
Alw21I	GWGCWC	4 cut(s)	115, 378, 621, 856
Alw26I	GTCTC	1 cut(s)	897
Alw44I	GTGCAC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	2 cut(s)	650, 867
AoxI	GGCC	2 cut(s)	489, 864
ApaLI	GTGCAC	1 cut(s)	111
ApeKI	GCWGC	3 cut(s)	43, 537, 918
ApoI	RAATTY	1 cut(s)	520
Asp718I	GGTACC	2 cut(s)	265, 646
AspLEI	GCGC	1 cut(s)	364
AspS9I	GGNCC	2 cut(s)	489, 865
AsuC2I	CCSGG	2 cut(s)	868, 869
AsuHPI	GGTGA	2 cut(s)	134, 566
AvaI	CYCGRG	2 cut(s)	650, 867
BaeGI	GKGCMC	1 cut(s)	115
BaeI	ACNNNNGTAYC	2 cut(s)	257, 290
BanI	GGYRCC	2 cut(s)	265, 646
BanII	GRGCYC	1 cut(s)	378
Bbv12I	GWGCWC	4 cut(s)	115, 378, 621, 856
BbvCI	CCTCAGC	2 cut(s)	170, 810
BbvI	GCAGC	3 cut(s)	55, 549, 930
BccI	CCATC	2 cut(s)	311, 692
BceAI	ACGGC	1 cut(s)	476
BciT130I	CCWGG	1 cut(s)	487
BclI	TGATCA	2 cut(s)	300, 681
BcnI	CCSGG	2 cut(s)	868, 869
BcoDI	GTCTC	1 cut(s)	897
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	426
BfuAI	ACCTGC	1 cut(s)	912
BglII	AGATCT	3 cut(s)	256, 637, 756
BisI	GCNGC	3 cut(s)	44, 538, 919
BlsI	GCNGC	3 cut(s)	45, 539, 920
Bme1390I	CCNGG	3 cut(s)	487, 868, 869
BmeT110I	CYCGRG	2 cut(s)	650, 867
BmgT120I	GGNCC	2 cut(s)	489, 865
BmiI	GGNNCC	3 cut(s)	267, 513, 648
BmrFI	CCNGG	3 cut(s)	487, 868, 869
BmsI	GCATC	5 cut(s)	353, 445, 553, 826, 837
BplI	GAGNNNNNCTC	4 cut(s)	365, 397, 746, 778
Bpu10I	CCTNAGC	2 cut(s)	170, 810
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	2 cut(s)	868, 869
Bsa29I	ATCGAT	1 cut(s)	498
BsaJI	CCNNGG	4 cut(s)	328, 486, 768, 867
Bsc4I	CCNNNNNNNGG	3 cut(s)	334, 715, 874
Bse3DI	GCAATG	1 cut(s)	699
BseBI	CCWGG	1 cut(s)	487
BseCI	ATCGAT	1 cut(s)	498
BseDI	CCNNGG	4 cut(s)	328, 486, 768, 867
BseGI	GGATG	5 cut(s)	229, 460, 610, 703, 841
BseLI	CCNNNNNNNGG	3 cut(s)	334, 715, 874
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	5 cut(s)	21, 161, 261, 378, 801
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	3 cut(s)	55, 549, 930
BsgI	GTGCAG	1 cut(s)	62
Bsh1285I	CGRYCG	1 cut(s)	768
BshFI	GGCC	2 cut(s)	491, 866
BshNI	GGYRCC	2 cut(s)	265, 646
BshVI	ATCGAT	1 cut(s)	498
BsiEI	CGRYCG	1 cut(s)	768
BsiHKAI	GWGCWC	4 cut(s)	115, 378, 621, 856
BsiHKCI	CYCGRG	2 cut(s)	650, 867
BsiSI	CCGG	1 cut(s)	868
BslI	CCNNNNNNNGG	3 cut(s)	334, 715, 874
BsmAI	GTCTC	1 cut(s)	897
BsnI	GGCC	2 cut(s)	491, 866
BsoBI	CYCGRG	2 cut(s)	650, 867
Bsp1286I	GDGCHC	4 cut(s)	115, 378, 621, 856
Bsp143I	GATC	7 cut(s)	4, 256, 300, 495, 637, 681, 756
BspACI	CCGC	3 cut(s)	263, 515, 644
BspANI	GGCC	2 cut(s)	491, 866
BspCNI	CTCAG	5 cut(s)	22, 162, 262, 379, 802
BspDI	ATCGAT	1 cut(s)	498
BspLI	GGNNCC	3 cut(s)	267, 513, 648
BspMAI	CTGCAG	1 cut(s)	430
BspMI	ACCTGC	1 cut(s)	912
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	383
BspT107I	GGYRCC	2 cut(s)	265, 646
BsrDI	GCAATG	1 cut(s)	699
BssECI	CCNNGG	4 cut(s)	328, 486, 768, 867
BssMI	GATC	7 cut(s)	4, 256, 300, 495, 637, 681, 756
BssT1I	CCWWGG	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	487
Bst4CI	ACNGT	3 cut(s)	710, 949, 955
Bst6I	CTCTTC	2 cut(s)	68, 383
BstC8I	GCNNGC	2 cut(s)	471, 542
BstDEI	CTNAG	7 cut(s)	30, 104, 170, 270, 387, 810, 966
BstENI	CCTNNNNNAGG	1 cut(s)	332
BstF5I	GGATG	5 cut(s)	229, 460, 610, 703, 841
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	7 cut(s)	7, 259, 303, 498, 640, 684, 759
BstMAI	GTCTC	1 cut(s)	897
BstMBI	GATC	7 cut(s)	4, 256, 300, 495, 637, 681, 756
BstMCI	CGRYCG	1 cut(s)	768
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNI	CCWGG	1 cut(s)	487
BstSCI	CCNGG	3 cut(s)	485, 866, 867
BstSFI	CTRYAG	1 cut(s)	426
BstSLI	GKGCMC	1 cut(s)	115
BstV1I	GCAGC	3 cut(s)	55, 549, 930
BstX2I	RGATCY	3 cut(s)	256, 637, 756
BstYI	RGATCY	3 cut(s)	256, 637, 756
Bsu15I	ATCGAT	1 cut(s)	498
BsuRI	GGCC	2 cut(s)	491, 866
BsuTUI	ATCGAT	1 cut(s)	498
BtsCI	GGATG	5 cut(s)	229, 460, 610, 703, 841
BtsI	GCAGTG	1 cut(s)	946
BtsIMutI	CAGTG	2 cut(s)	896, 946
BveI	ACCTGC	1 cut(s)	912
Cac8I	GCNNGC	2 cut(s)	471, 542
CfoI	GCGC	1 cut(s)	364
Cfr13I	GGNCC	2 cut(s)	489, 865
Cfr9I	CCCGGG	1 cut(s)	867
ClaI	ATCGAT	1 cut(s)	498
Csp6I	GTAC	5 cut(s)	178, 266, 274, 571, 647
CspCI	CAANNNNNGTGG	2 cut(s)	885, 920
CviAII	CATG	2 cut(s)	116, 548
CviQI	GTAC	5 cut(s)	178, 266, 274, 571, 647
DdeI	CTNAG	7 cut(s)	30, 104, 170, 270, 387, 810, 966
DpnI	GATC	7 cut(s)	6, 258, 302, 497, 639, 683, 758
DpnII	GATC	7 cut(s)	4, 256, 300, 495, 637, 681, 756
DraIII	CACNNNGTG	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	68, 383
EarI	CTCTTC	2 cut(s)	68, 383
Ecl136II	GAGCTC	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	378
Eco53kI	GAGCTC	1 cut(s)	376
Eco57I	CTGAAG	1 cut(s)	920
Eco88I	CYCGRG	2 cut(s)	650, 867
EcoICRI	GAGCTC	1 cut(s)	376
EcoNI	CCTNNNNNAGG	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	485
EcoT14I	CCWWGG	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	328
FaeI	CATG	2 cut(s)	119, 551
FatI	CATG	2 cut(s)	115, 547
FauNDI	CATATG	1 cut(s)	154
FbaI	TGATCA	2 cut(s)	300, 681
Fnu4HI	GCNGC	3 cut(s)	44, 538, 919
FokI	GGATG	5 cut(s)	236, 467, 617, 710, 848
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	3 cut(s)	44, 538, 919
FspBI	CTAG	1 cut(s)	482
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	3 cut(s)	44, 538, 919
HaeIII	GGCC	2 cut(s)	491, 866
HapII	CCGG	1 cut(s)	868
HhaI	GCGC	1 cut(s)	364
Hin1II	CATG	2 cut(s)	119, 551
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	3 cut(s)	34, 803, 815
HpaII	CCGG	1 cut(s)	868
HphI	GGTGA	2 cut(s)	134, 566
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	5 cut(s)	72, 223, 420, 604, 820
Hpy188III	TCNNGA	4 cut(s)	382, 587, 763, 800
Hpy8I	GTNNAC	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	755
HpyCH4III	ACNGT	3 cut(s)	710, 949, 955
HpyCH4V	TGCA	7 cut(s)	43, 113, 311, 428, 692, 939, 944
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	7 cut(s)	30, 104, 170, 270, 387, 810, 966
Hsp92II	CATG	2 cut(s)	119, 551
HspAI	GCGC	1 cut(s)	362
KpnI	GGTACC	2 cut(s)	269, 650
Ksp22I	TGATCA	2 cut(s)	300, 681
Kzo9I	GATC	7 cut(s)	4, 256, 300, 495, 637, 681, 756
LguI	GCTCTTC	1 cut(s)	383
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	3 cut(s)	55, 549, 930
LweI	GCATC	5 cut(s)	353, 445, 553, 826, 837
MaeI	CTAG	1 cut(s)	482
MaeIII	GTNAC	2 cut(s)	83, 949
MalI	GATC	7 cut(s)	6, 258, 302, 497, 639, 683, 758
MboI	GATC	7 cut(s)	4, 256, 300, 495, 637, 681, 756
MflI	RGATCY	3 cut(s)	256, 637, 756
MhlI	GDGCHC	4 cut(s)	115, 378, 621, 856
MluCI	AATT	7 cut(s)	440, 520, 531, 582, 821, 912, 934
MmeI	TCCRAC	1 cut(s)	885
MnlI	CCTC	6 cut(s)	118, 165, 382, 558, 763, 805
MseI	TTAA	4 cut(s)	144, 399, 633, 780
MslI	CAYNNNNRTG	3 cut(s)	120, 552, 668
MspA1I	CMGCKG	1 cut(s)	517
MspI	CCGG	1 cut(s)	868
MspR9I	CCNGG	3 cut(s)	487, 868, 869
MvaI	CCWGG	1 cut(s)	487
MwoI	GCNNNNNNNGC	1 cut(s)	361
NciI	CCSGG	2 cut(s)	868, 869
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	7 cut(s)	4, 256, 300, 495, 637, 681, 756
NlaIII	CATG	2 cut(s)	119, 551
NlaIV	GGNNCC	3 cut(s)	267, 513, 648
NmuCI	GTSAC	2 cut(s)	83, 949
PciSI	GCTCTTC	1 cut(s)	383
PfeI	GAWTC	3 cut(s)	34, 803, 815
PkrI	GCNGC	3 cut(s)	45, 539, 920
Psp124BI	GAGCTC	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	485
PspN4I	GGNNCC	3 cut(s)	267, 513, 648
PspPI	GGNCC	2 cut(s)	489, 865
PstI	CTGCAG	1 cut(s)	430
PsuI	RGATCY	3 cut(s)	256, 637, 756
RsaI	GTAC	5 cut(s)	179, 267, 275, 572, 648
RsaNI	GTAC	5 cut(s)	178, 266, 274, 571, 647
RseI	CAYNNNNRTG	3 cut(s)	120, 552, 668
SacI	GAGCTC	1 cut(s)	378
SapI	GCTCTTC	1 cut(s)	383
SaqAI	TTAA	4 cut(s)	144, 399, 633, 780
SatI	GCNGC	3 cut(s)	44, 538, 919
Sau3AI	GATC	7 cut(s)	4, 256, 300, 495, 637, 681, 756
Sau96I	GGNCC	2 cut(s)	489, 865
ScrFI	CCNGG	3 cut(s)	487, 868, 869
SduI	GDGCHC	4 cut(s)	115, 378, 621, 856
SfaNI	GCATC	5 cut(s)	353, 445, 553, 826, 837
SfcI	CTRYAG	1 cut(s)	426
SmaI	CCCGGG	1 cut(s)	869
SmiMI	CAYNNNNRTG	3 cut(s)	120, 552, 668
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SrfI	GCCCGGGC	1 cut(s)	869
Sse9I	AATT	7 cut(s)	440, 520, 531, 582, 821, 912, 934
SsiI	CCGC	3 cut(s)	263, 515, 644
SspMI	CTAG	1 cut(s)	482
SstI	GAGCTC	1 cut(s)	378
StyD4I	CCNGG	3 cut(s)	485, 866, 867
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	3 cut(s)	710, 949, 955
TaqI	TCGA	3 cut(s)	383, 498, 764
TaqII	GACCGA	1 cut(s)	782
TasI	AATT	7 cut(s)	440, 520, 531, 582, 821, 912, 934
TatI	WGTACW	2 cut(s)	273, 570
TfiI	GAWTC	3 cut(s)	34, 803, 815
Tru1I	TTAA	4 cut(s)	144, 399, 633, 780
Tru9I	TTAA	4 cut(s)	144, 399, 633, 780
TscAI	CASTG	2 cut(s)	903, 946
TseFI	GTSAC	2 cut(s)	83, 949
TseI	GCWGC	3 cut(s)	43, 537, 918
Tsp45I	GTSAC	2 cut(s)	83, 949
TspDTI	ATGAA	3 cut(s)	177, 356, 737
TspGWI	ACGGA	1 cut(s)	718
TspMI	CCCGGG	1 cut(s)	867
TspRI	CASTG	2 cut(s)	903, 946
VneI	GTGCAC	1 cut(s)	111
XagI	CCTNNNNNAGG	1 cut(s)	332
XapI	RAATTY	1 cut(s)	520
XmaI	CCCGGG	1 cut(s)	867
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.