Rh7DG121900

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001982
Physical Location & Seq
Reverse (-)
10342341 .. 10343051
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG121900.1

Sequence Viewer

Length: 711 bp
ATGGCAAAGGGCTTTTCTCATTTGGCAGACAGCCTCGATGACCTTGCTCTTGACATTCCATCAGCAAAAACCTTGTTCCAGTCGCTGGTCCCCAAGGCAATATTTGAAGGTTGGCTTGATGATTCATTTGTGGAATCCTTAAGTGCAGATGGTGAGGTGCAAGTTGGAGATGAAAAGGTGAGGCAGTACGAGAAAGAGCTTGTGTCCATAATTAACGAATACTTTCTCTCGGATGATATTCCCGAGCTCATTGAAAGCCTTGAAGATCTTGCAGCACCTGAGTATAATCCCATATTCTTGAAGAAGCTGATCACACTTGCAATGGATGGAAAGAGCCGTGAAAAGGAAATGGCATCTGTTCTGCTTTCTGCCCTTCATACTGAGATCTTCTCGGCCGAGGACAAAGTTAATGGATTTGTCTTGCTTCTGGAATCTGCAGAGGATACAGAGTTGGACAACTTGGATGCTTCAAATGAGCTTGCTCTCTTTTCACTCAGGGCCGTGATCGATGATGTGTTGGCTCCACTGAATTTGGAAGAAATTGGCAGCAGGTTGCGACCAAACTGCAGCGCAACTGAGACTGTGCGAATGGCTCAGTCACTGGTTTCTGCTCGTCATGCTGGTGAGACCGCGAGAGGCTCCTGGGAGGTTCTCACTGACCATAGTTGGTTCTCACCTCCACTTTTCTGGCCGAAATACAACTCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

236

Amino Acids

26.21

Weight (kDa)

4.34

Isoelectric Point (pI)

35.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 1 - 40 9.3e-06 MA3 domain
MA3 PF02847 64 - 173 1.8e-21 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 540
AccB7I CCANNNNNTGG 1 cut(s) 85
AccII CGCG 1 cut(s) 632
AciI CCGC 1 cut(s) 630
AcoI YGGCCR 2 cut(s) 393, 689
AcsI RAATTY 1 cut(s) 529
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 85, 343
AflII CTTAAG 1 cut(s) 139
AgsI TTSAA 5 cut(s) 107, 254, 263, 301, 471
AjnI CCWGG 1 cut(s) 641
AluBI AGCT 4 cut(s) 199, 247, 307, 478
AluI AGCT 4 cut(s) 199, 247, 307, 478
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 2 cut(s) 572, 620
AlwNI CAGNNNCTG 3 cut(s) 85, 278, 601
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 3 cut(s) 393, 498, 689
ApeKI GCWGC 3 cut(s) 272, 546, 567
ApoI RAATTY 1 cut(s) 529
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 1 cut(s) 572
AspS9I GGNCC 2 cut(s) 88, 498
AsuHPI GGTGA 4 cut(s) 164, 190, 635, 666
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 1 cut(s) 88
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 3 cut(s) 284, 558, 579
BccI CCATC 3 cut(s) 67, 143, 320
BceAI ACGGC 2 cut(s) 321, 485
BcgI CGANNNNNNTGC 4 cut(s) 26, 60, 546, 580
BciT130I CCWGG 1 cut(s) 643
BciVI GTATCC 1 cut(s) 436
BclI TGATCA 1 cut(s) 309
BcoDI GTCTC 2 cut(s) 572, 620
BfmI CTRYAG 2 cut(s) 435, 565
BfrI CTTAAG 1 cut(s) 139
BfuAI ACCTGC 1 cut(s) 540
BfuI GTATCC 1 cut(s) 436
BglII AGATCT 2 cut(s) 265, 384
BisI GCNGC 3 cut(s) 273, 547, 568
BlsI GCNGC 3 cut(s) 274, 548, 569
Bme1390I CCNGG 1 cut(s) 643
Bme18I GGWCC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 88, 498
BmiI GGNNCC 3 cut(s) 90, 522, 640
BmrFI CCNGG 1 cut(s) 643
BmsI GCATC 2 cut(s) 362, 454
BplI GAGNNNNNCTC 2 cut(s) 374, 406
Bsa29I ATCGAT 1 cut(s) 507
BsaI GGTCTC 1 cut(s) 620
BsaJI CCNNGG 3 cut(s) 93, 396, 642
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 343
Bse1I ACTGG 2 cut(s) 79, 606
Bse3DI GCAATG 1 cut(s) 327
BseBI CCWGG 1 cut(s) 643
BseCI ATCGAT 1 cut(s) 507
BseDI CCNNGG 3 cut(s) 93, 396, 642
BseGI GGATG 3 cut(s) 238, 331, 469
BseLI CCNNNNNNNGG 2 cut(s) 85, 343
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 5 cut(s) 270, 372, 508, 567, 608
BseNI ACTGG 2 cut(s) 79, 606
BseX3I CGGCCG 1 cut(s) 393
BseXI GCAGC 3 cut(s) 284, 558, 579
BsgI GTGCAG 1 cut(s) 165
Bsh1236I CGCG 1 cut(s) 632
Bsh1285I CGRYCG 1 cut(s) 396
BshFI GGCC 3 cut(s) 395, 500, 691
BshVI ATCGAT 1 cut(s) 507
BsiEI CGRYCG 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 2 cut(s) 85, 343
BsmAI GTCTC 2 cut(s) 572, 620
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 3 cut(s) 395, 500, 691
Bso31I GGTCTC 1 cut(s) 620
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 4 cut(s) 265, 309, 384, 504
BspACI CCGC 1 cut(s) 630
BspANI GGCC 3 cut(s) 395, 500, 691
BspCNI CTCAG 5 cut(s) 271, 373, 507, 568, 607
BspDI ATCGAT 1 cut(s) 507
BspFNI CGCG 1 cut(s) 632
BspLI GGNNCC 3 cut(s) 90, 522, 640
BspMAI CTGCAG 2 cut(s) 439, 569
BspMI ACCTGC 1 cut(s) 540
BspTI CTTAAG 1 cut(s) 139
BspTNI GGTCTC 1 cut(s) 620
BsrDI GCAATG 1 cut(s) 327
BsrI ACTGG 2 cut(s) 79, 606
BssECI CCNNGG 3 cut(s) 93, 396, 642
BssMI GATC 4 cut(s) 265, 309, 384, 504
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 643
Bst4CI ACNGT 1 cut(s) 583
BstAFI CTTAAG 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 5 cut(s) 279, 381, 494, 576, 594
BstF5I GGATG 3 cut(s) 238, 331, 469
BstFNI CGCG 1 cut(s) 632
BstHHI GCGC 1 cut(s) 572
BstKTI GATC 4 cut(s) 268, 312, 387, 507
BstMAI GTCTC 2 cut(s) 572, 620
BstMBI GATC 4 cut(s) 265, 309, 384, 504
BstMCI CGRYCG 1 cut(s) 396
BstMWI GCNNNNNNNGC 1 cut(s) 617
BstNI CCWGG 1 cut(s) 643
BstSCI CCNGG 1 cut(s) 641
BstSFI CTRYAG 2 cut(s) 435, 565
BstUI CGCG 1 cut(s) 632
BstV1I GCAGC 3 cut(s) 284, 558, 579
BstX2I RGATCY 2 cut(s) 265, 384
BstXI CCANNNNNNTGG 1 cut(s) 687
BstYI RGATCY 2 cut(s) 265, 384
BstZI CGGCCG 1 cut(s) 393
Bsu15I ATCGAT 1 cut(s) 507
BsuI GTATCC 1 cut(s) 436
BsuRI GGCC 3 cut(s) 395, 500, 691
BsuTUI ATCGAT 1 cut(s) 507
BtsCI GGATG 3 cut(s) 238, 331, 469
BtsIMutI CAGTG 3 cut(s) 524, 599, 654
BveI ACCTGC 1 cut(s) 540
Cac8I GCNNGC 1 cut(s) 480
CaiI CAGNNNCTG 3 cut(s) 85, 278, 601
CfoI GCGC 1 cut(s) 572
Cfr13I GGNCC 2 cut(s) 88, 498
ClaI ATCGAT 1 cut(s) 507
Csp6I GTAC 1 cut(s) 187
CspCI CAANNNNNGTGG 2 cut(s) 513, 548
CviAII CATG 1 cut(s) 617
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 5 cut(s) 279, 381, 494, 576, 594
DpnI GATC 4 cut(s) 267, 311, 386, 506
DpnII GATC 4 cut(s) 265, 309, 384, 504
EaeI YGGCCR 2 cut(s) 393, 689
EagI CGGCCG 1 cut(s) 393
Ecl136II GAGCTC 1 cut(s) 247
EclXI CGGCCG 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 620
Eco47I GGWCC 1 cut(s) 88
Eco52I CGGCCG 1 cut(s) 393
Eco53kI GAGCTC 1 cut(s) 247
Eco88I CYCGRG 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 641
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 1 cut(s) 620
FaiI YATR 6 cut(s) 209, 285, 293, 378, 618, 663
FalI AAGNNNNNCTT 2 cut(s) 99, 131
FaqI GGGAC 1 cut(s) 74
FatI CATG 1 cut(s) 616
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 3 cut(s) 273, 547, 568
FokI GGATG 3 cut(s) 245, 338, 476
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 3 cut(s) 273, 547, 568
GlaI GCGC 1 cut(s) 571
GluI GCNGC 3 cut(s) 273, 547, 568
HaeIII GGCC 3 cut(s) 395, 500, 691
HhaI GCGC 1 cut(s) 572
Hin1II CATG 1 cut(s) 620
Hin6I GCGC 1 cut(s) 570
HinP1I GCGC 1 cut(s) 570
HinfI GANTC 3 cut(s) 122, 134, 431
HphI GGTGA 4 cut(s) 164, 190, 635, 666
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 4 cut(s) 50, 242, 298, 428
HpyAV CCTTC 2 cut(s) 101, 383
HpyCH4III ACNGT 1 cut(s) 583
HpyCH4V TGCA 6 cut(s) 146, 160, 272, 320, 437, 567
HpyF10VI GCNNNNNNNGC 1 cut(s) 617
HpyF3I CTNAG 5 cut(s) 279, 381, 494, 576, 594
Hsp92II CATG 1 cut(s) 620
HspAI GCGC 1 cut(s) 570
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 4 cut(s) 265, 309, 384, 504
LmnI GCTCC 2 cut(s) 526, 644
Lsp1109I GCAGC 3 cut(s) 284, 558, 579
LweI GCATC 2 cut(s) 362, 454
MaeIII GTNAC 1 cut(s) 597
MalI GATC 4 cut(s) 267, 311, 386, 506
MboI GATC 4 cut(s) 265, 309, 384, 504
MboII GAAGA 4 cut(s) 275, 313, 379, 548
MflI RGATCY 2 cut(s) 265, 384
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 3 cut(s) 210, 529, 540
MmeI TCCRAC 2 cut(s) 145, 432
MnlI CCTC 8 cut(s) 44, 148, 174, 391, 433, 629, 640, 687
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 3 cut(s) 140, 213, 408
MslI CAYNNNNRTG 1 cut(s) 621
MspCI CTTAAG 1 cut(s) 139
MspR9I CCNGG 1 cut(s) 643
MvaI CCWGG 1 cut(s) 643
MvnI CGCG 1 cut(s) 632
MwoI GCNNNNNNNGC 1 cut(s) 617
NdeII GATC 4 cut(s) 265, 309, 384, 504
NlaIII CATG 1 cut(s) 620
NlaIV GGNNCC 3 cut(s) 90, 522, 640
NmeAIII GCCGAG 2 cut(s) 371, 421
NmuCI GTSAC 1 cut(s) 597
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 3 cut(s) 122, 134, 431
PflMI CCANNNNNTGG 1 cut(s) 85
PkrI GCNGC 3 cut(s) 274, 548, 569
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 641
PspGI CCWGG 1 cut(s) 641
PspN4I GGNNCC 3 cut(s) 90, 522, 640
PspPI GGNCC 2 cut(s) 88, 498
PstI CTGCAG 2 cut(s) 439, 569
PstNI CAGNNNCTG 3 cut(s) 85, 278, 601
PsuI RGATCY 2 cut(s) 265, 384
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 621
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 3 cut(s) 140, 213, 408
SatI GCNGC 3 cut(s) 273, 547, 568
Sau3AI GATC 4 cut(s) 265, 309, 384, 504
Sau96I GGNCC 2 cut(s) 88, 498
ScrFI CCNGG 1 cut(s) 643
SduI GDGCHC 1 cut(s) 249
SfaNI GCATC 2 cut(s) 362, 454
SfcI CTRYAG 2 cut(s) 435, 565
SinI GGWCC 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 621
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
Sse9I AATT 3 cut(s) 210, 529, 540
SsiI CCGC 1 cut(s) 630
SspI AATATT 1 cut(s) 102
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 641
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 583
TaqI TCGA 2 cut(s) 36, 507
TasI AATT 3 cut(s) 210, 529, 540
TfiI GAWTC 3 cut(s) 122, 134, 431
Tru1I TTAA 3 cut(s) 140, 213, 408
Tru9I TTAA 3 cut(s) 140, 213, 408
TscAI CASTG 3 cut(s) 531, 606, 661
TseFI GTSAC 1 cut(s) 597
TseI GCWGC 3 cut(s) 272, 546, 567
Tsp45I GTSAC 1 cut(s) 597
TspDTI ATGAA 3 cut(s) 114, 186, 365
TspRI CASTG 3 cut(s) 531, 606, 661
Van91I CCANNNNNTGG 1 cut(s) 85
Vha464I CTTAAG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 88
XapI RAATTY 1 cut(s) 529
XmnI GAANNNNTTC 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.