pycom14g13890

Programmed cell death protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
16721129 .. 16722745
1617 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g13890.1

Sequence Viewer

Length: 1617 bp
ATGGCTTCGGTTTTGCTTTCATCTTTGTATGCCGATGTCATTAGCCCTCCCCAGATTAAAGATGGATTTTTCATCCTTCTTGAATCTGCTGATGACCTTGCAGTGGACATATTGGATGCAGTCGACATCCTCGCTTTGTTCCTTGCCCGTGCAGTGGTTGATGACATCCTTCCTCCTGCCTTCTGCACCAGGGCAAAGAAAGCACTCCCAGAATCTTCAAAGGGCGTTCAGGTAATCCAGACTGCTGAGAAGAGCTATCTTTCAGCTCCGCACCATGCCGAACTTGTGGAAAGGAGGTGGGGCGGTAGCACCCACATTACTGTTGAAGAGGTGAAGAAAAAAATTGCTGGTCTATTGAGGGAATACGTGGAAAGTGGAGACACTTCTGAGGCTTGTAGGTGCATAAGGGAGTTGGGTGTTCCATTCTTTCATCATGAGGTTGTGAAGAGGGCTTTGGTTCTTGCCATGGAGATTCAAACTGCAGAACCGCTAATAATTAAGCTGTTAAAGGAAGCAGCTGAAGAAGGCTTGATTAGTTTTAGTCAAATGGTAAAGGGCTTTTCTCGATTGGTAGAGAGCCTTGACGACCTTGCTCTTGACATTCCATCAGCAGTTAGCTTGTTCCAGTCCCTGGTCCTCAAGGCGACAGATGAAGGTTGGCTTGATGCTTCCTTTTTGAAGTCCTTGGATGAAGATGGCGATGCACGAGTTGAAGATGAAAAAGTGAGGCGGTACAAGAAAGAGATTGTGGCCATAATTCATGAATATTTTCTCTCAGATGATATCCCAGAACTGATCCGGAGCCTTGAAGATCTTGGGGTACCTCAATATAATCCACTCTTCTTGAAGAAGCTGATCACCCTTGCGATGGATCGCAAGAACCGTGAAAAGGAAATGGCATCTGTTCTGCTTTCTGCCCTTCACATTGAGATCTTTTCAACCGATGACATAGTTAATGGTTTTGTTTTGCTTCTGGAATCTGCCGAGGATACAGAATTGGACATTTTGGATGCTTCAAATGAGCTTGCTCTCTTCCTGGCTAGGGCTGTGATCGATGATGTCTTGGTTCCTCTAAATTTGGACGAAATTGGCAGCAAGTTGCCACCAAATAGCAGTGGAAGTGAGACTGTTCGATCGGCCCAATCACTGATTTCTGCTCGCCATGCTGGCGAGAGACTCCTGAGATGTTGGGGAGGCGGGACTGGCTGGGCTGTGGAGGATGCAAAGGACAAGATAGCAAAGCTGTTGGAGGAGTATGAAAGCGGGGGTGTTGTGAACGAGGCCTGCCAGTGCATCCGGGATCTTGGAATGCCGTTCTTTAACCACGAGGTGGTGAAGAAGGCACTGGTCATGGCCATGGAAAAGAAAAACGACAGGATGCTAGACCTGCTTCAGGAGTGCTTCAGTGAAGGACTGATCACAATCAACCAGATGACGAAAGGCTTCACCCGAATCAAGGACGGGCTAGATGACCTTGCTCTCGACATTCCAAACGCAAGGGAGAAGTTCAGCTTCTACGTGGAGCAGGCACAGGACAAGGGGTGGCTCCTGCCTTCCTTTGGATCACCTGCTGCAGATGGCTCGCAGAAATCCGACCCAGGCTCTGCAGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

539

Amino Acids

59.32

Weight (kDa)

4.73

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 1 - 58 2.4e-08 MA3 domain
MA3 PF02847 111 - 222 5.8e-30 MA3 domain
MA3 PF02847 246 - 355 5.5e-27 MA3 domain
MA3 PF02847 409 - 516 2.5e-32 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1576
Acc36I ACCTGC 2 cut(s) 1395, 1576
Acc65I GGTACC 1 cut(s) 820
AccB1I GGYRCC 1 cut(s) 820
AccB7I CCANNNNNTGG 2 cut(s) 631, 1330
AccI GTMKAC 1 cut(s) 123
AccIII TCCGGA 1 cut(s) 798
AciI CCGC 6 cut(s) 269, 303, 488, 730, 1197, 1263
AclWI GGATC 4 cut(s) 790, 879, 1308, 1570
AcoI YGGCCR 2 cut(s) 750, 1353
AcsI RAATTY 1 cut(s) 1075
AcuI CTGAAG 3 cut(s) 540, 1376, 1387
AdeI CACNNNGTG 1 cut(s) 1330
AfaI GTAC 2 cut(s) 734, 822
AjnI CCWGG 4 cut(s) 188, 630, 1035, 1597
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
Alw26I GTCTC 3 cut(s) 372, 1118, 1168
AlwI GGATC 4 cut(s) 790, 879, 1308, 1570
AlwNI CAGNNNCTG 2 cut(s) 631, 1604
Aor13HI TCCGGA 1 cut(s) 798
AoxI GGCC 4 cut(s) 750, 1137, 1281, 1353
ApeKI GCWGC 4 cut(s) 515, 1092, 1571, 1607
ApoI RAATTY 1 cut(s) 1075
Asp700I GAANNNNTTC 2 cut(s) 768, 1442
Asp718I GGTACC 1 cut(s) 820
AspS9I GGNCC 2 cut(s) 634, 1138
AsuC2I CCSGG 1 cut(s) 1298
AsuHPI GGTGA 5 cut(s) 343, 850, 1345, 1438, 1557
AvaII GGWCC 1 cut(s) 634
BalI TGGCCA 2 cut(s) 752, 1355
BanI GGYRCC 1 cut(s) 820
BauI CACGAG 2 cut(s) 705, 1325
BbvI GCAGC 3 cut(s) 527, 1104, 1558
BccI CCATC 5 cut(s) 56, 613, 689, 862, 1571
BceAI ACGGC 1 cut(s) 1297
BcgI CGANNNNNNTGC 2 cut(s) 1563, 1597
BciT130I CCWGG 4 cut(s) 190, 632, 1037, 1599
BciVI GTATCC 1 cut(s) 982
BclI TGATCA 2 cut(s) 855, 1416
BcnI CCSGG 1 cut(s) 1298
BcoDI GTCTC 3 cut(s) 372, 1118, 1168
BfaI CTAG 3 cut(s) 1041, 1382, 1466
BfmI CTRYAG 3 cut(s) 480, 1572, 1605
BfuAI ACCTGC 2 cut(s) 1395, 1576
BfuI GTATCC 1 cut(s) 982
BglI GCCNNNNNGGC 1 cut(s) 1167
BglII AGATCT 2 cut(s) 811, 930
BisI GCNGC 4 cut(s) 516, 1093, 1572, 1608
BlsI GCNGC 4 cut(s) 517, 1094, 1573, 1609
Bme1390I CCNGG 5 cut(s) 190, 632, 1037, 1298, 1599
Bme18I GGWCC 1 cut(s) 634
BmgT120I GGNCC 2 cut(s) 634, 1138
BmiI GGNNCC 4 cut(s) 803, 822, 1068, 1547
BmrFI CCNGG 5 cut(s) 190, 632, 1037, 1298, 1599
BmsI GCATC 8 cut(s) 106, 655, 691, 908, 1000, 1210, 1302, 1368
BpuEI CTTGAG 1 cut(s) 623
BpuMI CCSGG 1 cut(s) 1298
Bsa29I ATCGAT 1 cut(s) 1053
BsaAI YACGTR 2 cut(s) 367, 1519
BsaBI GATNNNNATC 1 cut(s) 1421
BsaJI CCNNGG 7 cut(s) 189, 465, 630, 684, 984, 1356, 1597
BsaWI WCCGGW 1 cut(s) 798
Bse1I ACTGG 4 cut(s) 625, 1207, 1288, 1350
Bse8I GATNNNNATC 1 cut(s) 1421
BseAI TCCGGA 1 cut(s) 798
BseBI CCWGG 4 cut(s) 190, 632, 1037, 1599
BseCI ATCGAT 1 cut(s) 1053
BseDI CCNNGG 7 cut(s) 189, 465, 630, 684, 984, 1356, 1597
BseGI GGATG 9 cut(s) 72, 121, 126, 165, 694, 1015, 1225, 1293, 1383
BseJI GATNNNNATC 1 cut(s) 1421
BseMII CTCAG 4 cut(s) 237, 378, 789, 1172
BseNI ACTGG 4 cut(s) 625, 1207, 1288, 1350
BseRI GAGGAG 1 cut(s) 1265
BseXI GCAGC 3 cut(s) 527, 1104, 1558
BseYI CCCAGC 1 cut(s) 1206
BsgI GTGCAG 2 cut(s) 169, 171
Bsh1285I CGRYCG 1 cut(s) 1136
BshFI GGCC 4 cut(s) 752, 1139, 1283, 1355
BshNI GGYRCC 1 cut(s) 820
BshVI ATCGAT 1 cut(s) 1053
BsiEI CGRYCG 1 cut(s) 1136
BsiSI CCGG 2 cut(s) 799, 1297
BslFI GGGAC 2 cut(s) 613, 1213
BsmAI GTCTC 3 cut(s) 372, 1118, 1168
BsmFI GGGAC 2 cut(s) 613, 1213
BsmI GAATGC 1 cut(s) 1314
BsnI GGCC 4 cut(s) 752, 1139, 1283, 1355
Bsp13I TCCGGA 1 cut(s) 798
Bsp19I CCATGG 2 cut(s) 465, 1356
BspACI CCGC 6 cut(s) 269, 303, 488, 730, 1197, 1263
BspANI GGCC 4 cut(s) 752, 1139, 1283, 1355
BspCNI CTCAG 4 cut(s) 238, 379, 788, 1173
BspDI ATCGAT 1 cut(s) 1053
BspEI TCCGGA 1 cut(s) 798
BspHI TCATGA 2 cut(s) 433, 760
BspLI GGNNCC 4 cut(s) 803, 822, 1068, 1547
BspMAI CTGCAG 3 cut(s) 484, 1576, 1609
BspMI ACCTGC 2 cut(s) 1395, 1576
BspPI GGATC 4 cut(s) 790, 879, 1308, 1570
BspQI GCTCTTC 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 820
BsrI ACTGG 4 cut(s) 625, 1207, 1288, 1350
BssECI CCNNGG 7 cut(s) 189, 465, 630, 684, 984, 1356, 1597
BssSI CACGAG 2 cut(s) 705, 1325
BssT1I CCWWGG 3 cut(s) 465, 684, 1356
Bst2BI CACGAG 2 cut(s) 705, 1325
Bst2UI CCWGG 4 cut(s) 190, 632, 1037, 1599
Bst4CI ACNGT 3 cut(s) 322, 884, 1129
Bst6I CTCTTC 5 cut(s) 245, 321, 440, 845, 1037
BstBAI YACGTR 2 cut(s) 367, 1519
BstC8I GCNNGC 6 cut(s) 1026, 1159, 1168, 1285, 1527, 1583
BstDEI CTNAG 4 cut(s) 246, 387, 775, 1181
BstDSI CCRYGG 2 cut(s) 465, 1356
BstENI CCTNNNNNAGG 1 cut(s) 1391
BstF5I GGATG 9 cut(s) 72, 121, 126, 165, 694, 1015, 1225, 1293, 1383
BstMAI GTCTC 3 cut(s) 372, 1118, 1168
BstMCI CGRYCG 1 cut(s) 1136
BstMWI GCNNNNNNNGC 5 cut(s) 200, 1163, 1167, 1203, 1387
BstNI CCWGG 4 cut(s) 190, 632, 1037, 1599
BstSCI CCNGG 5 cut(s) 188, 630, 1035, 1296, 1597
BstSFI CTRYAG 3 cut(s) 480, 1572, 1605
BstV1I GCAGC 3 cut(s) 527, 1104, 1558
BstX2I RGATCY 3 cut(s) 811, 930, 1300
BstYI RGATCY 3 cut(s) 811, 930, 1300
Bsu15I ATCGAT 1 cut(s) 1053
BsuI GTATCC 1 cut(s) 982
BsuRI GGCC 4 cut(s) 752, 1139, 1283, 1355
BsuTUI ATCGAT 1 cut(s) 1053
BtgI CCRYGG 2 cut(s) 465, 1356
BtgZI GCGATG 2 cut(s) 714, 881
BtsCI GGATG 9 cut(s) 72, 121, 126, 165, 694, 1015, 1225, 1293, 1383
BtsI GCAGTG 3 cut(s) 108, 159, 1120
BtsIMutI CAGTG 7 cut(s) 108, 159, 1120, 1145, 1295, 1343, 1411
BveI ACCTGC 2 cut(s) 1395, 1576
Cac8I GCNNGC 6 cut(s) 1026, 1159, 1168, 1285, 1527, 1583
CaiI CAGNNNCTG 2 cut(s) 631, 1604
CciI TCATGA 2 cut(s) 433, 760
Cfr13I GGNCC 2 cut(s) 634, 1138
ClaI ATCGAT 1 cut(s) 1053
Csp6I GTAC 2 cut(s) 733, 821
CspCI CAANNNNNGTGG 2 cut(s) 825, 860
CviAII CATG 7 cut(s) 275, 434, 466, 761, 1163, 1351, 1357
CviQI GTAC 2 cut(s) 733, 821
DdeI CTNAG 4 cut(s) 246, 387, 775, 1181
DraIII CACNNNGTG 1 cut(s) 1330
EaeI YGGCCR 2 cut(s) 750, 1353
Eam1104I CTCTTC 5 cut(s) 245, 321, 440, 845, 1037
EarI CTCTTC 5 cut(s) 245, 321, 440, 845, 1037
Eco130I CCWWGG 3 cut(s) 465, 684, 1356
Eco147I AGGCCT 1 cut(s) 1283
Eco32I GATATC 1 cut(s) 784
Eco47I GGWCC 1 cut(s) 634
Eco57I CTGAAG 3 cut(s) 540, 1376, 1387
EcoNI CCTNNNNNAGG 1 cut(s) 1391
EcoRII CCWGG 4 cut(s) 188, 630, 1035, 1597
EcoRV GATATC 1 cut(s) 784
EcoT14I CCWWGG 3 cut(s) 465, 684, 1356
ErhI CCWWGG 3 cut(s) 465, 684, 1356
FaeI CATG 7 cut(s) 278, 437, 469, 764, 1166, 1354, 1360
FalI AAGNNNNNCTT 4 cut(s) 645, 677, 1496, 1528
FaqI GGGAC 2 cut(s) 613, 1213
FatI CATG 7 cut(s) 274, 433, 465, 760, 1162, 1350, 1356
FauI CCCGC 2 cut(s) 1190, 1256
FbaI TGATCA 2 cut(s) 855, 1416
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 4 cut(s) 516, 1093, 1572, 1608
FokI GGATG 9 cut(s) 59, 113, 128, 152, 701, 1022, 1232, 1280, 1390
Fsp4HI GCNGC 4 cut(s) 516, 1093, 1572, 1608
FspBI CTAG 3 cut(s) 1041, 1382, 1466
GluI GCNGC 4 cut(s) 516, 1093, 1572, 1608
GsaI CCCAGC 1 cut(s) 1210
HaeIII GGCC 4 cut(s) 752, 1139, 1283, 1355
HapII CCGG 2 cut(s) 799, 1297
Hin1II CATG 7 cut(s) 278, 437, 469, 764, 1166, 1354, 1360
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 6 cut(s) 83, 212, 472, 977, 1176, 1452
HpaII CCGG 2 cut(s) 799, 1297
HphI GGTGA 5 cut(s) 343, 850, 1345, 1438, 1557
Hpy166II GTNNAC 3 cut(s) 106, 124, 1276
Hpy188I TCNGA 3 cut(s) 388, 778, 1594
Hpy8I GTNNAC 3 cut(s) 106, 124, 1276
HpyAV CCTTC 9 cut(s) 86, 179, 190, 518, 647, 929, 1333, 1403, 1563
HpyCH4III ACNGT 3 cut(s) 322, 884, 1129
HpyCH4IV ACGT 2 cut(s) 366, 1518
HpyF10VI GCNNNNNNNGC 5 cut(s) 200, 1163, 1167, 1203, 1387
HpyF3I CTNAG 4 cut(s) 246, 387, 775, 1181
HpySE526I ACGT 2 cut(s) 366, 1518
Hsp92II CATG 7 cut(s) 278, 437, 469, 764, 1166, 1354, 1360
Kpn2I TCCGGA 1 cut(s) 798
KpnI GGTACC 1 cut(s) 824
Ksp22I TGATCA 2 cut(s) 855, 1416
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 4 cut(s) 271, 801, 1522, 1551
Lsp1109I GCAGC 3 cut(s) 527, 1104, 1558
LweI GCATC 8 cut(s) 106, 655, 691, 908, 1000, 1210, 1302, 1368
MaeI CTAG 3 cut(s) 1041, 1382, 1466
MaeII ACGT 2 cut(s) 366, 1518
MflI RGATCY 3 cut(s) 811, 930, 1300
MlsI TGGCCA 2 cut(s) 752, 1355
MluCI AATT 6 cut(s) 342, 495, 756, 995, 1075, 1086
MluNI TGGCCA 2 cut(s) 752, 1355
MlyI GAGTC 1 cut(s) 1170
MmeI TCCRAC 2 cut(s) 1227, 1617
Mox20I TGGCCA 2 cut(s) 752, 1355
MroI TCCGGA 1 cut(s) 798
MroXI GAANNNNTTC 2 cut(s) 768, 1442
MscI TGGCCA 2 cut(s) 752, 1355
MseI TTAA 5 cut(s) 57, 498, 506, 954, 1320
MslI CAYNNNNRTG 1 cut(s) 1355
Msp20I TGGCCA 2 cut(s) 752, 1355
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 2 cut(s) 799, 1297
MspR9I CCNGG 5 cut(s) 190, 632, 1037, 1298, 1599
Mva1269I GAATGC 1 cut(s) 1314
MvaI CCWGG 4 cut(s) 190, 632, 1037, 1599
MwoI GCNNNNNNNGC 5 cut(s) 200, 1163, 1167, 1203, 1387
NciI CCSGG 1 cut(s) 1298
NcoI CCATGG 2 cut(s) 465, 1356
NlaIII CATG 7 cut(s) 278, 437, 469, 764, 1166, 1354, 1360
NlaIV GGNNCC 4 cut(s) 803, 822, 1068, 1547
NmeAIII GCCGAG 1 cut(s) 1009
PagI TCATGA 2 cut(s) 433, 760
PaqCI CACCTGC 1 cut(s) 1576
PceI AGGCCT 1 cut(s) 1283
PciSI GCTCTTC 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 880
PctI GAATGC 1 cut(s) 1314
PdmI GAANNNNTTC 2 cut(s) 768, 1442
PfeI GAWTC 5 cut(s) 83, 212, 472, 977, 1452
PflMI CCANNNNNTGG 2 cut(s) 631, 1330
PfoI TCCNGGA 1 cut(s) 1296
PkrI GCNGC 4 cut(s) 517, 1094, 1573, 1609
Ple19I CGATCG 1 cut(s) 1136
PleI GAGTC 1 cut(s) 1170
PpsI GAGTC 1 cut(s) 1170
Ppu21I YACGTR 2 cut(s) 367, 1519
Psp6I CCWGG 4 cut(s) 188, 630, 1035, 1597
PspFI CCCAGC 1 cut(s) 1206
PspGI CCWGG 4 cut(s) 188, 630, 1035, 1597
PspN4I GGNNCC 4 cut(s) 803, 822, 1068, 1547
PspPI GGNCC 2 cut(s) 634, 1138
PstI CTGCAG 3 cut(s) 484, 1576, 1609
PstNI CAGNNNCTG 2 cut(s) 631, 1604
PsuI RGATCY 3 cut(s) 811, 930, 1300
PvuI CGATCG 1 cut(s) 1136
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 2 cut(s) 734, 822
RsaNI GTAC 2 cut(s) 733, 821
RseI CAYNNNNRTG 1 cut(s) 1355
SalI GTCGAC 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 5 cut(s) 57, 498, 506, 954, 1320
SatI GCNGC 4 cut(s) 516, 1093, 1572, 1608
Sau96I GGNCC 2 cut(s) 634, 1138
SchI GAGTC 1 cut(s) 1170
ScrFI CCNGG 5 cut(s) 190, 632, 1037, 1298, 1599
SfaNI GCATC 8 cut(s) 106, 655, 691, 908, 1000, 1210, 1302, 1368
SfcI CTRYAG 3 cut(s) 480, 1572, 1605
SinI GGWCC 1 cut(s) 634
SmiMI CAYNNNNRTG 1 cut(s) 1355
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
Sse9I AATT 6 cut(s) 342, 495, 756, 995, 1075, 1086
SseBI AGGCCT 1 cut(s) 1283
SsiI CCGC 6 cut(s) 269, 303, 488, 730, 1197, 1263
SspI AATATT 1 cut(s) 767
SspMI CTAG 3 cut(s) 1041, 1382, 1466
StuI AGGCCT 1 cut(s) 1283
StyD4I CCNGG 5 cut(s) 188, 630, 1035, 1296, 1597
StyI CCWWGG 3 cut(s) 465, 684, 1356
TaaI ACNGT 3 cut(s) 322, 884, 1129
TaiI ACGT 2 cut(s) 369, 1521
TaqI TCGA 5 cut(s) 123, 565, 1053, 1132, 1482
TasI AATT 6 cut(s) 342, 495, 756, 995, 1075, 1086
TfiI GAWTC 5 cut(s) 83, 212, 472, 977, 1452
Tru1I TTAA 5 cut(s) 57, 498, 506, 954, 1320
Tru9I TTAA 5 cut(s) 57, 498, 506, 954, 1320
TscAI CASTG 7 cut(s) 108, 159, 1120, 1152, 1295, 1350, 1411
TseI GCWGC 4 cut(s) 515, 1092, 1571, 1607
TspDTI ATGAA 9 cut(s) 9, 61, 419, 666, 705, 732, 749, 777, 1272
TspRI CASTG 7 cut(s) 108, 159, 1120, 1152, 1295, 1350, 1411
Van91I CCANNNNNTGG 2 cut(s) 631, 1330
VpaK11BI GGWCC 1 cut(s) 634
XagI CCTNNNNNAGG 1 cut(s) 1391
XapI RAATTY 1 cut(s) 1075
XcmI CCANNNNNNNNNTGG 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 123
XmnI GAANNNNTTC 2 cut(s) 768, 1442
XspI CTAG 3 cut(s) 1041, 1382, 1466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.