Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001982

Physical Location & Seq

Genomic Coordinates Forward (+)

57585942 .. 57588291

Gene Structure 2350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCAAAGGGCTTTTCTCATTTGGCAGACAGCCTCGATGACCTTGCTCTTGACATTCCATCAGCAAAAACCTTGTTCCAGTCACTGGTCCCCAAGGCAATATTTGAAGGTTGGCTTGATGATTCATTTGTGGAATCCTTAAGTGCAGATGGTGAGGTGCAAGTTGGAGATGAAAAGGTGAGGCAGTACGAGAAAGAGATTGTGTCCATAATTTACGAATACTTTCTCTGGGATGATATTCCCGAGCTCATTGAAAGCCTTGAAGATCTTGCAGCACCTGAGTATAATGCCATATTCTTGAAGAAGCTGATCACACTTGCAATGGATGGAAAGAACCATGAAAAGGAAATGGCATCTGTTCTGCTTTCTGCCCTTCATACGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05205 ko05206 map05205 map05206

Pfam Domains

Protein Families

MA3

Protein Analysis

128

Amino Acids

14.41

Weight (kDa)

4.3

Isoelectric Point (pI)

30.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MA3	PF02847	1 - 40	3.2e-06	MA3 domain
MA3	PF02847	64 - 126	1.3e-11	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48390 AT4G24800 AT4G24800 AT4G24800 AT4G24800 AT5G63190 AT5G63190
fragaria_vesca	FvH4_5g07020
malus_domestica	MD06G1160300.v1.1 MD14G1166300.v1.1
prunus_persica	Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1
pyrus_communis	pycom14g13890
rosa_chinensis	RchiOBHm_Chr7g0191511 RchiOBHm_Chr7g0191601 RchiOBHm_Chr7g0191611 RchiOBHm_Chr7g0191661
rosa_laevigata	RLG00000004436 RLG00000004439 RLG00000004442
rosa_multiflora	Rmu_sc0001123.1_g000008 Rmu_sc0003634.1_g000005 Rmu_sc0010599.1_g000004 Rmu_sc0010599.1_g000006 Rmu_sc0018698.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438450 Rroxscaffold_157G00438480 Rroxscaffold_3G00263670 Rroxscaffold_3G00263720
rosa_rugosa	Rorug06G0510500 Rorug06G0510700
rosa_samantha	Rh7AG119000 Rh7AG119300 Rh7AG119600 Rh7BG121500 Rh7BG121800 Rh7CG123800 Rh7CG124200 Rh7CG124600 Rh7DG121900 Rh7DG122400 Rh7DG122600
rosa_wichuraiana	Rw7G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	85
AfaI	GTAC	2 cut(s)	188, 383
AfiI	CCNNNNNNNGG	2 cut(s)	85, 343
AflII	CTTAAG	1 cut(s)	139
AgsI	TTSAA	4 cut(s)	107, 254, 263, 301
AluBI	AGCT	2 cut(s)	247, 307
AluI	AGCT	2 cut(s)	247, 307
Alw21I	GWGCWC	1 cut(s)	249
AlwNI	CAGNNNCTG	2 cut(s)	85, 278
Ama87I	CYCGRG	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	164, 190
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	3 cut(s)	67, 143, 320
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BclI	TGATCA	1 cut(s)	309
BfrI	CTTAAG	1 cut(s)	139
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme18I	GGWCC	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	90
BmsI	GCATC	1 cut(s)	362
BsaAI	YACGTR	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 343
Bse1I	ACTGG	2 cut(s)	79, 90
Bse3DI	GCAATG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	2 cut(s)	238, 331
BseLI	CCNNNNNNNGG	2 cut(s)	85, 343
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	2 cut(s)	79, 90
BseXI	GCAGC	1 cut(s)	284
BsgI	GTGCAG	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	2 cut(s)	85, 343
BsmFI	GGGAC	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	265, 309
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	90
BspTI	CTTAAG	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	79, 90
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	2 cut(s)	265, 309
BssT1I	CCWWGG	1 cut(s)	93
BstAFI	CTTAAG	1 cut(s)	139
BstBAI	YACGTR	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	238, 331
BstKTI	GATC	2 cut(s)	268, 312
BstMBI	GATC	2 cut(s)	265, 309
BstSNI	TACGTA	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	238, 331
BtsIMutI	CAGTG	1 cut(s)	83
CaiI	CAGNNNCTG	2 cut(s)	85, 278
Cfr13I	GGNCC	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	187, 382
CviAII	CATG	1 cut(s)	338
CviJI	RGCY	6 cut(s)	12, 33, 115, 247, 258, 307
CviKI_1	RGCY	6 cut(s)	12, 33, 115, 247, 258, 307
CviQI	GTAC	2 cut(s)	187, 382
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	2 cut(s)	267, 311
DpnII	GATC	2 cut(s)	265, 309
Ecl136II	GAGCTC	1 cut(s)	247
Eco105I	TACGTA	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	1 cut(s)	341
FaiI	YATR	5 cut(s)	209, 285, 293, 339, 378
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	1 cut(s)	337
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	2 cut(s)	245, 338
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	273
GluI	GCNGC	1 cut(s)	273
Hin1II	CATG	1 cut(s)	341
HinfI	GANTC	2 cut(s)	122, 134
HphI	GGTGA	2 cut(s)	164, 190
Hpy188III	TCNNGA	3 cut(s)	50, 242, 298
HpyAV	CCTTC	2 cut(s)	101, 383
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	4 cut(s)	146, 160, 272, 320
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	380
Hsp92II	CATG	1 cut(s)	341
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	2 cut(s)	265, 309
LpnPI	CCDG	4 cut(s)	71, 92, 214, 291
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	1 cut(s)	362
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	2 cut(s)	267, 311
MboI	GATC	2 cut(s)	265, 309
MboII	GAAGA	2 cut(s)	275, 313
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	3 cut(s)	44, 148, 174
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	1 cut(s)	140
MspCI	CTTAAG	1 cut(s)	139
NdeII	GATC	2 cut(s)	265, 309
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	122, 134
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	274
Ppu21I	YACGTR	1 cut(s)	381
Psp124BI	GAGCTC	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	88
PstNI	CAGNNNCTG	2 cut(s)	85, 278
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	2 cut(s)	188, 383
RsaNI	GTAC	2 cut(s)	187, 382
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	2 cut(s)	265, 309
Sau96I	GGNCC	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	9 cut(s)	45, 74, 112, 159, 180, 249, 280, 309, 383
SfaNI	GCATC	1 cut(s)	362
SinI	GGWCC	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
SnaBI	TACGTA	1 cut(s)	381
Sse9I	AATT	1 cut(s)	210
SspI	AATATT	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	93
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	1 cut(s)	36
TasI	AATT	1 cut(s)	210
TfiI	GAWTC	2 cut(s)	122, 134
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	4 cut(s)	114, 186, 354, 365
TspRI	CASTG	1 cut(s)	90
Van91I	CCANNNNNTGG	1 cut(s)	85
Vha464I	CTTAAG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.