RchiOBHm_Chr7g0191511

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001982
Physical Location & Seq
Reverse (-)
10263711 .. 10264919
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17114

Sequence Viewer

Length: 1095 bp
ATGGCCTCAGTTTTGCTCTCAGCTTTGTATGCTGAGGTCATCTGCCCTGCGCAGATTCAAGATGGATTTTATATACTTCTTGCCTTCTTGGTTCTGCTGATGACCGTGAAGTGGACATACTGGATGCAGGCAAATAAAGCACTCCCTGAATCGTCCAAGGGAGTTCAGGTAATTCAGACTGCAGAGAAGAACTATATTTCTGCTCCACACCATGCAGAACTTGTGGAGAGGAGGTGGAGCGGTAGCACTCACGTAACTGTTGAAAAGGTGAAGAAAAAGATTTGTGGTTTGTTGAGAGAATATGTGGAAATTGGAGACACTCTTGAGGCCTGTAGGTGCATTAGAGAGTTAAGAGTTCCGTTCTATCATCATGAGGTTGTGAAAAGAGCTTTGATTCTTGGTATGGAGACTCAGACAGCTGAACCATTAATAACGAAGCTTCAGATGGCAAAGGGCTTTTCTCATCTGGCAGACAGCCTCGATGACCTTGCACTTGACATTCCATCAGCAAAAACCTTGTTCCAGTCGCTGGTCCCCAAGGCAATATTTGAAGGTTGGCTTGATGATTCATTTGTGGAATCCTTAAGTGCAGATGGTGAGGTGCAAGTTGGAGATGAAAAGGTGAGGCAGTTCGAGAAAGAGATTGTGTCCATAATTCACGAATACTTTCTCTCGGATGATATTCCCGAGCTCATTGAAAGCCTTGAAGATCTTGCAGCACCTGAGTATAATCCCATATTCTTGAAGAAGCTGATCACACTTGCAATGGATGGAAAGAGCGGTGAAAAGGAAATGGCATCTGTTCTGCTTTCTGCCCTTCATACTGAGATCTTCTCGGCCGAGGACAAAGTTAATGGATTTGTCTTGCTTCTGGAATCTGCAGAGGATACAGAGTTGGACAACTTGGATGCTTCAAATGAGCTTGCTCTCTTTTCAGCCAGGGCCGTGATCGATGATGTGTTGGCTCCACTGAATTTGGAAGAAATTGGCAGCAGGTTGCGACCAAACTGCAGCGCAACTGAGACTGTGCGAATGGCTCAGTCACTGGTTTCTGCTCGTCATGCGGGTGAGAGGCTCCTGGGAGGTTCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

364

Amino Acids

40.43

Weight (kDa)

4.86

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 90 - 188 4.3e-20 MA3 domain
MA3 PF02847 211 - 321 6e-23 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 984
AccB7I CCANNNNNTGG 1 cut(s) 529
AccBSI CCGCTC 2 cut(s) 240, 780
AciI CCGC 3 cut(s) 240, 780, 1064
AcoI YGGCCR 1 cut(s) 837
AcsI RAATTY 1 cut(s) 973
AcuI CTGAAG 1 cut(s) 425
AfiI CCNNNNNNNGG 2 cut(s) 111, 529
AflII CTTAAG 1 cut(s) 583
AgsI TTSAA 7 cut(s) 59, 263, 551, 698, 707, 745, 915
AjnI CCWGG 2 cut(s) 938, 1077
AluBI AGCT 7 cut(s) 23, 389, 419, 439, 691, 751, 922
AluI AGCT 7 cut(s) 23, 389, 419, 439, 691, 751, 922
Alw21I GWGCWC 1 cut(s) 693
Alw26I GTCTC 3 cut(s) 309, 401, 1016
AlwNI CAGNNNCTG 3 cut(s) 529, 722, 1045
Ama87I CYCGRG 1 cut(s) 686
AoxI GGCC 4 cut(s) 3, 327, 837, 942
ApeKI GCWGC 3 cut(s) 716, 990, 1011
ApoI RAATTY 1 cut(s) 973
AseI ATTAAT 1 cut(s) 428
Asp700I GAANNNNTTC 1 cut(s) 666
AspLEI GCGC 2 cut(s) 52, 1016
AspS9I GGNCC 2 cut(s) 532, 942
AsuHPI GGTGA 5 cut(s) 280, 608, 634, 794, 1079
AvaI CYCGRG 1 cut(s) 686
AvaII GGWCC 1 cut(s) 532
BanII GRGCYC 1 cut(s) 693
BarI GAAGNNNNNNTAC 2 cut(s) 101, 133
Bbv12I GWGCWC 1 cut(s) 693
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 3 cut(s) 728, 1002, 1023
BccI CCATC 5 cut(s) 56, 439, 511, 587, 764
BceAI ACGGC 1 cut(s) 929
BcgI CGANNNNNNTGC 4 cut(s) 470, 504, 990, 1024
BciT130I CCWGG 2 cut(s) 940, 1079
BciVI GTATCC 1 cut(s) 880
BclI TGATCA 1 cut(s) 753
BcoDI GTCTC 3 cut(s) 309, 401, 1016
BfmI CTRYAG 4 cut(s) 180, 331, 879, 1009
BfrI CTTAAG 1 cut(s) 583
BfuAI ACCTGC 1 cut(s) 984
BfuI GTATCC 1 cut(s) 880
BglII AGATCT 2 cut(s) 709, 828
BisI GCNGC 3 cut(s) 717, 991, 1012
BlsI GCNGC 3 cut(s) 718, 992, 1013
Bme1390I CCNGG 2 cut(s) 940, 1079
Bme18I GGWCC 1 cut(s) 532
BmeT110I CYCGRG 1 cut(s) 686
BmgT120I GGNCC 2 cut(s) 532, 942
BmiI GGNNCC 3 cut(s) 534, 966, 1076
BmrFI CCNGG 2 cut(s) 940, 1079
BmsI GCATC 3 cut(s) 114, 806, 898
BplI GAGNNNNNCTC 2 cut(s) 818, 850
Bpu10I CCTNAGC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 344
Bsa29I ATCGAT 1 cut(s) 951
BsaAI YACGTR 1 cut(s) 253
BsaJI CCNNGG 5 cut(s) 156, 537, 840, 939, 1078
BsaXI ACNNNNNCTCC 4 cut(s) 153, 183, 218, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 529
Bse1I ACTGG 3 cut(s) 125, 523, 1050
Bse3DI GCAATG 1 cut(s) 771
BseBI CCWGG 2 cut(s) 940, 1079
BseCI ATCGAT 1 cut(s) 951
BseDI CCNNGG 5 cut(s) 156, 537, 840, 939, 1078
BseGI GGATG 4 cut(s) 129, 682, 775, 913
BseLI CCNNNNNNNGG 2 cut(s) 111, 529
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 8 cut(s) 21, 24, 33, 425, 714, 816, 1011, 1052
BseNI ACTGG 3 cut(s) 125, 523, 1050
BseRI GAGGAG 1 cut(s) 244
BseX3I CGGCCG 1 cut(s) 837
BseXI GCAGC 3 cut(s) 728, 1002, 1023
BsgI GTGCAG 1 cut(s) 609
Bsh1285I CGRYCG 1 cut(s) 840
BshFI GGCC 4 cut(s) 5, 329, 839, 944
BshVI ATCGAT 1 cut(s) 951
BsiEI CGRYCG 1 cut(s) 840
BsiHKAI GWGCWC 1 cut(s) 693
BsiHKCI CYCGRG 1 cut(s) 686
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 2 cut(s) 111, 529
BsmAI GTCTC 3 cut(s) 309, 401, 1016
BsmFI GGGAC 1 cut(s) 518
BsnI GGCC 4 cut(s) 5, 329, 839, 944
BsoBI CYCGRG 1 cut(s) 686
Bsp1286I GDGCHC 1 cut(s) 693
Bsp143I GATC 4 cut(s) 709, 753, 828, 948
BspACI CCGC 3 cut(s) 240, 780, 1064
BspANI GGCC 4 cut(s) 5, 329, 839, 944
BspCNI CTCAG 8 cut(s) 20, 25, 32, 424, 715, 817, 1012, 1051
BspDI ATCGAT 1 cut(s) 951
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 3 cut(s) 534, 966, 1076
BspMAI CTGCAG 3 cut(s) 184, 883, 1013
BspMI ACCTGC 1 cut(s) 984
BspTI CTTAAG 1 cut(s) 583
BsrBI CCGCTC 2 cut(s) 240, 780
BsrDI GCAATG 1 cut(s) 771
BsrI ACTGG 3 cut(s) 125, 523, 1050
BssECI CCNNGG 5 cut(s) 156, 537, 840, 939, 1078
BssMI GATC 4 cut(s) 709, 753, 828, 948
BssT1I CCWWGG 2 cut(s) 156, 537
Bst2UI CCWGG 2 cut(s) 940, 1079
Bst4CI ACNGT 3 cut(s) 106, 259, 1027
BstAFI CTTAAG 1 cut(s) 583
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 129, 924
BstDEI CTNAG 8 cut(s) 7, 19, 33, 411, 723, 825, 1020, 1038
BstF5I GGATG 4 cut(s) 129, 682, 775, 913
BstHHI GCGC 2 cut(s) 52, 1016
BstKTI GATC 4 cut(s) 712, 756, 831, 951
BstMAI GTCTC 3 cut(s) 309, 401, 1016
BstMBI GATC 4 cut(s) 709, 753, 828, 948
BstMCI CGRYCG 1 cut(s) 840
BstMWI GCNNNNNNNGC 3 cut(s) 29, 137, 1061
BstNI CCWGG 2 cut(s) 940, 1079
BstSCI CCNGG 2 cut(s) 938, 1077
BstSFI CTRYAG 4 cut(s) 180, 331, 879, 1009
BstV1I GCAGC 3 cut(s) 728, 1002, 1023
BstX2I RGATCY 2 cut(s) 709, 828
BstYI RGATCY 2 cut(s) 709, 828
BstZI CGGCCG 1 cut(s) 837
Bsu15I ATCGAT 1 cut(s) 951
BsuI GTATCC 1 cut(s) 880
BsuRI GGCC 4 cut(s) 5, 329, 839, 944
BsuTUI ATCGAT 1 cut(s) 951
BtsCI GGATG 4 cut(s) 129, 682, 775, 913
BtsIMutI CAGTG 3 cut(s) 968, 1043, 1090
BveI ACCTGC 1 cut(s) 984
Cac8I GCNNGC 2 cut(s) 129, 924
CaiI CAGNNNCTG 3 cut(s) 529, 722, 1045
CciI TCATGA 1 cut(s) 370
CfoI GCGC 2 cut(s) 52, 1016
Cfr13I GGNCC 2 cut(s) 532, 942
ClaI ATCGAT 1 cut(s) 951
CspCI CAANNNNNGTGG 2 cut(s) 957, 992
CviAII CATG 3 cut(s) 212, 371, 1061
DdeI CTNAG 8 cut(s) 7, 19, 33, 411, 723, 825, 1020, 1038
DpnI GATC 4 cut(s) 711, 755, 830, 950
DpnII GATC 4 cut(s) 709, 753, 828, 948
EaeI YGGCCR 1 cut(s) 837
EagI CGGCCG 1 cut(s) 837
Ecl136II GAGCTC 1 cut(s) 691
EclXI CGGCCG 1 cut(s) 837
Eco130I CCWWGG 2 cut(s) 156, 537
Eco147I AGGCCT 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 693
Eco47I GGWCC 1 cut(s) 532
Eco52I CGGCCG 1 cut(s) 837
Eco53kI GAGCTC 1 cut(s) 691
Eco57I CTGAAG 1 cut(s) 425
Eco88I CYCGRG 1 cut(s) 686
EcoICRI GAGCTC 1 cut(s) 691
EcoRII CCWGG 2 cut(s) 938, 1077
EcoT14I CCWWGG 2 cut(s) 156, 537
EcoT38I GRGCYC 1 cut(s) 693
ErhI CCWWGG 2 cut(s) 156, 537
FaeI CATG 3 cut(s) 215, 374, 1064
FalI AAGNNNNNCTT 2 cut(s) 543, 575
FaqI GGGAC 1 cut(s) 518
FatI CATG 3 cut(s) 211, 370, 1060
FauI CCCGC 1 cut(s) 1057
FbaI TGATCA 1 cut(s) 753
Fnu4HI GCNGC 3 cut(s) 717, 991, 1012
FokI GGATG 4 cut(s) 136, 689, 782, 920
FriOI GRGCYC 1 cut(s) 693
Fsp4HI GCNGC 3 cut(s) 717, 991, 1012
FspI TGCGCA 1 cut(s) 51
GlaI GCGC 2 cut(s) 51, 1015
GluI GCNGC 3 cut(s) 717, 991, 1012
HaeIII GGCC 4 cut(s) 5, 329, 839, 944
HhaI GCGC 2 cut(s) 52, 1016
Hin1II CATG 3 cut(s) 215, 374, 1064
Hin6I GCGC 2 cut(s) 50, 1014
HinP1I GCGC 2 cut(s) 50, 1014
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 7 cut(s) 55, 149, 394, 409, 566, 578, 875
HphI GGTGA 5 cut(s) 280, 608, 634, 794, 1079
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 4 cut(s) 177, 414, 444, 676
Hpy188III TCNNGA 8 cut(s) 59, 323, 371, 634, 659, 686, 742, 872
Hpy8I GTNNAC 1 cut(s) 114
HpyAV CCTTC 3 cut(s) 94, 545, 827
HpyCH4III ACNGT 3 cut(s) 106, 259, 1027
HpyCH4IV ACGT 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 137, 1061
HpyF3I CTNAG 8 cut(s) 7, 19, 33, 411, 723, 825, 1020, 1038
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 3 cut(s) 215, 374, 1064
HspAI GCGC 2 cut(s) 50, 1014
Ksp22I TGATCA 1 cut(s) 753
Kzo9I GATC 4 cut(s) 709, 753, 828, 948
LmnI GCTCC 4 cut(s) 208, 237, 970, 1080
Lsp1109I GCAGC 3 cut(s) 728, 1002, 1023
LweI GCATC 3 cut(s) 114, 806, 898
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 253, 1041
MalI GATC 4 cut(s) 711, 755, 830, 950
MbiI CCGCTC 2 cut(s) 240, 780
MboI GATC 4 cut(s) 709, 753, 828, 948
MboII GAAGA 6 cut(s) 199, 283, 719, 757, 823, 992
MflI RGATCY 2 cut(s) 709, 828
MhlI GDGCHC 1 cut(s) 693
MluCI AATT 5 cut(s) 171, 309, 654, 973, 984
MlyI GAGTC 1 cut(s) 403
MmeI TCCRAC 2 cut(s) 589, 876
MroXI GAANNNNTTC 1 cut(s) 666
MseI TTAA 4 cut(s) 350, 428, 584, 852
MslI CAYNNNNRTG 1 cut(s) 1065
MspA1I CMGCKG 1 cut(s) 419
MspCI CTTAAG 1 cut(s) 583
MspR9I CCNGG 2 cut(s) 940, 1079
MvaI CCWGG 2 cut(s) 940, 1079
MwoI GCNNNNNNNGC 3 cut(s) 29, 137, 1061
NdeII GATC 4 cut(s) 709, 753, 828, 948
NlaIII CATG 3 cut(s) 215, 374, 1064
NlaIV GGNNCC 3 cut(s) 534, 966, 1076
NmeAIII GCCGAG 2 cut(s) 815, 865
NmuCI GTSAC 1 cut(s) 1041
NsbI TGCGCA 1 cut(s) 51
PagI TCATGA 1 cut(s) 370
PceI AGGCCT 1 cut(s) 329
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 6 cut(s) 55, 149, 394, 566, 578, 875
PflMI CCANNNNNTGG 1 cut(s) 529
PkrI GCNGC 3 cut(s) 718, 992, 1013
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
Ppu21I YACGTR 1 cut(s) 253
PshBI ATTAAT 1 cut(s) 428
Psp124BI GAGCTC 1 cut(s) 693
Psp6I CCWGG 2 cut(s) 938, 1077
PspGI CCWGG 2 cut(s) 938, 1077
PspN4I GGNNCC 3 cut(s) 534, 966, 1076
PspPI GGNCC 2 cut(s) 532, 942
PstI CTGCAG 3 cut(s) 184, 883, 1013
PstNI CAGNNNCTG 3 cut(s) 529, 722, 1045
PsuI RGATCY 2 cut(s) 709, 828
PvuII CAGCTG 1 cut(s) 419
RseI CAYNNNNRTG 1 cut(s) 1065
SacI GAGCTC 1 cut(s) 693
SaqAI TTAA 4 cut(s) 350, 428, 584, 852
SatI GCNGC 3 cut(s) 717, 991, 1012
Sau3AI GATC 4 cut(s) 709, 753, 828, 948
Sau96I GGNCC 2 cut(s) 532, 942
SchI GAGTC 1 cut(s) 403
ScrFI CCNGG 2 cut(s) 940, 1079
SduI GDGCHC 1 cut(s) 693
SfaNI GCATC 3 cut(s) 114, 806, 898
SfcI CTRYAG 4 cut(s) 180, 331, 879, 1009
SinI GGWCC 1 cut(s) 532
SmiMI CAYNNNNRTG 1 cut(s) 1065
SmlI CTYRAG 2 cut(s) 323, 583
SmoI CTYRAG 2 cut(s) 323, 583
Sse9I AATT 5 cut(s) 171, 309, 654, 973, 984
SseBI AGGCCT 1 cut(s) 329
SsiI CCGC 3 cut(s) 240, 780, 1064
SspI AATATT 1 cut(s) 546
SstI GAGCTC 1 cut(s) 693
StuI AGGCCT 1 cut(s) 329
StyD4I CCNGG 2 cut(s) 938, 1077
StyI CCWWGG 2 cut(s) 156, 537
TaaI ACNGT 3 cut(s) 106, 259, 1027
TaiI ACGT 1 cut(s) 255
TaqI TCGA 3 cut(s) 480, 633, 951
TasI AATT 5 cut(s) 171, 309, 654, 973, 984
TfiI GAWTC 6 cut(s) 55, 149, 394, 566, 578, 875
Tru1I TTAA 4 cut(s) 350, 428, 584, 852
Tru9I TTAA 4 cut(s) 350, 428, 584, 852
TscAI CASTG 2 cut(s) 975, 1050
TseFI GTSAC 1 cut(s) 1041
TseI GCWGC 3 cut(s) 716, 990, 1011
Tsp45I GTSAC 1 cut(s) 1041
TspDTI ATGAA 3 cut(s) 558, 630, 809
TspGWI ACGGA 1 cut(s) 348
TspRI CASTG 2 cut(s) 975, 1050
Van91I CCANNNNNTGG 1 cut(s) 529
Vha464I CTTAAG 1 cut(s) 583
VpaK11BI GGWCC 1 cut(s) 532
VspI ATTAAT 1 cut(s) 428
XapI RAATTY 1 cut(s) 973
XmnI GAANNNNTTC 1 cut(s) 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.