Rh7AG119000

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001982
Physical Location & Seq
Forward (+)
9335218 .. 9338740
3523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG119000.1

Sequence Viewer

Length: 1434 bp
ATGATAAAAGTATCACAGTTCTGTGTGGCATGTGGTCCATATGTAAGCATGGGCTTTTCAATACTGTGTAAAGGAAAGGATCCAACACCTTCAGTTGTTCCTCCATCTATCAAAATTCAGATTCCAGATTTACCAAAACGGAGATCTGTTTCTAGTGGATTTGGGTCTGTTCTCTATACCATTTACAGTGCATATCATTACACCCTGCCAGCTCCGGAGGTGCAGCCTGGGGTGGTGGCTCCTGATGCACCTCACCCCCCGCCTCCGCCCCCTGCAGTGGCACTAAACAATGGAAAGTCTCGTGAATTTGTGAATAAAACTAAGAAGCTTTCAACCGGATACAAGTGTCCTGCTCAGGGTGCACAGGGAAATCAGGGGGAACAGGGAAATCAGGGCGCACAGGGTAATGAGGGGGAACAGGGAAATCAGGGTGCACAGGGTAATGAGGGCGAACATGGAAATCAGGGTGTACAGGTTAATGAGGCGGAACATGGAAATCAGGGTGCCCCACATGGTAATCAGGGTGCACAGGCAAATCAGGGCTATTTTCATTGTGAATCCCATATTGATCATAATGACCCTAACCATGACAGTGGAGAGGAGAAATACTTACTTAGTGGTGCACATGGTGGTGAGGTTCAACTTGAAGCTGTTAAGCTATCAGATGTAGATGAAAAGCTGAGGCAGTACCAGAATGAGATTGTGTCCATTATACACAAATACTTACTCTCGGATGATATTCTCAAGCTTATTCAAAGCCTTGAAGATCTTGCGGTACCTGAGTACAATCCCATATTTTTGAAGAAGCTGATCACACTTGCAGTAGATGGAAAGAACCTTGGAAAGGAAATGACATCTGTTCTGCTTTCTGCACTTCATATTGAGATCTTCTCGACTGAGGACATAGTTAATGGATTTGTCTTGCTTCTAGAATCTGCACAGGATACAGAATTGGACATCTTGGATGCTTCAAATGAGCTTGCTTTCTTTCTGGCCAGGGCCGTGATTGATGATGTGTTGGCTCCGCTGAATTTGGAAGAAATTGGCAGCAGGTTGCCACCAAATTGTAGCGCAACTGAAACTCTGCAAATGGCTCAGTCACTGGTTTCTGTGCATCATGCTGGTGAATATGCGAGGCAGTACAAGTCCATAATTCAGGAATACTTTTTCTCGGATGATATTCCCGTGCTCATTCAAAGCCTTAAAAGATCTTGCGAATTGGGCATCTTGGATGCTTCAAATGAGTGTGCTCTCTATCTGGCCCGGGCTGTGGTTGATGATGTATTGTCTCCGCTGAAGTTGGAAGAAATTGGCAGCAGGTTGCCACCGAATTGCAGTGCAACTGTGACTGTGCGAATGGCTCAGTCACTGGTTTCTGCGCGTCATACTGGTGACTGGCTTTTGAATTGTTGGGGAGTTGGTGACAGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

477

Amino Acids

51.58

Weight (kDa)

4.97

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 231 - 340 1e-20 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1041, 1308
Acc65I GGTACC 1 cut(s) 775
AccB1I GGYRCC 2 cut(s) 503, 775
AccII CGCG 1 cut(s) 1381
AccIII TCCGGA 1 cut(s) 214
AciI CCGC 6 cut(s) 260, 266, 485, 773, 1025, 1292
AclWI GGATC 2 cut(s) 74, 87
AcoI YGGCCR 1 cut(s) 993
AcsI RAATTY 3 cut(s) 114, 305, 1030
AcuI CTGAAG 2 cut(s) 75, 1316
AdeI CACNNNGTG 1 cut(s) 629
AfaI GTAC 5 cut(s) 471, 689, 777, 785, 1142
AfiI CCNNNNNNNGG 4 cut(s) 277, 356, 844, 1270
AjnI CCWGG 2 cut(s) 226, 995
AluBI AGCT 8 cut(s) 212, 328, 650, 658, 679, 748, 808, 979
AluI AGCT 8 cut(s) 212, 328, 650, 658, 679, 748, 808, 979
Alw21I GWGCWC 6 cut(s) 364, 436, 529, 625, 1191, 1252
Alw26I GTCTC 2 cut(s) 303, 1293
Alw44I GTGCAC 4 cut(s) 360, 432, 525, 621
AlwI GGATC 2 cut(s) 74, 87
AlwNI CAGNNNCTG 2 cut(s) 1102, 1369
Ama87I CYCGRG 1 cut(s) 1263
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 3 cut(s) 993, 999, 1260
ApaLI GTGCAC 4 cut(s) 360, 432, 525, 621
ApeKI GCWGC 3 cut(s) 223, 1047, 1314
ApoI RAATTY 3 cut(s) 114, 305, 1030
Asp718I GGTACC 1 cut(s) 775
AspLEI GCGC 3 cut(s) 398, 1073, 1381
AspS9I GGNCC 3 cut(s) 35, 999, 1261
AsuC2I CCSGG 2 cut(s) 1264, 1265
AsuHPI GGTGA 5 cut(s) 245, 644, 1136, 1403, 1433
AvaI CYCGRG 1 cut(s) 1263
AvaII GGWCC 1 cut(s) 35
BaeGI GKGCMC 5 cut(s) 364, 436, 508, 529, 625
BaeI ACNNNNGTAYC 4 cut(s) 331, 364, 767, 800
BalI TGGCCA 1 cut(s) 995
BamHI GGATCC 1 cut(s) 79
BanI GGYRCC 2 cut(s) 503, 775
BauI CACGAG 1 cut(s) 300
Bbv12I GWGCWC 6 cut(s) 364, 436, 529, 625, 1191, 1252
BbvCI CCTCAGC 1 cut(s) 680
BbvI GCAGC 3 cut(s) 235, 1059, 1326
BccI CCATC 2 cut(s) 112, 821
BceAI ACGGC 1 cut(s) 986
BciT130I CCWGG 2 cut(s) 228, 997
BciVI GTATCC 2 cut(s) 332, 937
BclI TGATCA 2 cut(s) 568, 810
BcnI CCSGG 2 cut(s) 1264, 1265
BcoDI GTCTC 2 cut(s) 303, 1293
BfaI CTAG 2 cut(s) 153, 929
BfmI CTRYAG 1 cut(s) 273
BfuAI ACCTGC 2 cut(s) 1041, 1308
BfuI GTATCC 2 cut(s) 332, 937
BglII AGATCT 4 cut(s) 143, 766, 885, 1208
BisI GCNGC 3 cut(s) 224, 1048, 1315
BlsI GCNGC 3 cut(s) 225, 1049, 1316
Bme1390I CCNGG 4 cut(s) 228, 997, 1264, 1265
Bme18I GGWCC 1 cut(s) 35
BmeT110I CYCGRG 1 cut(s) 1263
BmgT120I GGNCC 3 cut(s) 35, 999, 1261
BmiI GGNNCC 5 cut(s) 81, 240, 505, 777, 1023
BmrFI CCNGG 4 cut(s) 228, 997, 1264, 1265
BmsI GCATC 5 cut(s) 235, 955, 1123, 1222, 1233
BplI GAGNNNNNCTC 2 cut(s) 875, 907
Bpu10I CCTNAGC 2 cut(s) 354, 680
BpuEI CTTGAG 1 cut(s) 728
BpuMI CCSGG 2 cut(s) 1264, 1265
BsaJI CCNNGG 4 cut(s) 227, 838, 996, 1263
BsaWI WCCGGW 2 cut(s) 214, 335
Bsc4I CCNNNNNNNGG 4 cut(s) 277, 356, 844, 1270
Bse1I ACTGG 4 cut(s) 1107, 1374, 1393, 1400
BseAI TCCGGA 1 cut(s) 214
BseBI CCWGG 2 cut(s) 228, 997
BseDI CCNNGG 4 cut(s) 227, 838, 996, 1263
BseGI GGATG 4 cut(s) 739, 970, 1180, 1237
BseLI CCNNNNNNNGG 4 cut(s) 277, 356, 844, 1270
BseMII CTCAG 6 cut(s) 368, 671, 771, 888, 1109, 1376
BseNI ACTGG 4 cut(s) 1107, 1374, 1393, 1400
BseRI GAGGAG 1 cut(s) 614
BseSI GKGCMC 5 cut(s) 364, 436, 508, 529, 625
BseXI GCAGC 3 cut(s) 235, 1059, 1326
BsgI GTGCAG 3 cut(s) 242, 855, 921
Bsh1236I CGCG 1 cut(s) 1381
BshFI GGCC 3 cut(s) 995, 1001, 1262
BshNI GGYRCC 2 cut(s) 503, 775
BsiHKAI GWGCWC 6 cut(s) 364, 436, 529, 625, 1191, 1252
BsiHKCI CYCGRG 1 cut(s) 1263
BsiSI CCGG 3 cut(s) 215, 336, 1264
BslI CCNNNNNNNGG 4 cut(s) 277, 356, 844, 1270
BsmAI GTCTC 2 cut(s) 303, 1293
BsnI GGCC 3 cut(s) 995, 1001, 1262
BsoBI CYCGRG 1 cut(s) 1263
Bsp1286I GDGCHC 7 cut(s) 364, 436, 508, 529, 625, 1191, 1252
Bsp13I TCCGGA 1 cut(s) 214
Bsp1407I TGTACA 1 cut(s) 469
Bsp143I GATC 7 cut(s) 79, 143, 568, 766, 810, 885, 1208
BspACI CCGC 6 cut(s) 260, 266, 485, 773, 1025, 1292
BspANI GGCC 3 cut(s) 995, 1001, 1262
BspCNI CTCAG 6 cut(s) 367, 672, 772, 889, 1108, 1375
BspEI TCCGGA 1 cut(s) 214
BspFNI CGCG 1 cut(s) 1381
BspLI GGNNCC 5 cut(s) 81, 240, 505, 777, 1023
BspMAI CTGCAG 1 cut(s) 277
BspMI ACCTGC 2 cut(s) 1041, 1308
BspPI GGATC 2 cut(s) 74, 87
BspT107I GGYRCC 2 cut(s) 503, 775
BsrGI TGTACA 1 cut(s) 469
BsrI ACTGG 4 cut(s) 1107, 1374, 1393, 1400
BssECI CCNNGG 4 cut(s) 227, 838, 996, 1263
BssMI GATC 7 cut(s) 79, 143, 568, 766, 810, 885, 1208
BssSI CACGAG 1 cut(s) 300
BssT1I CCWWGG 1 cut(s) 838
Bst2BI CACGAG 1 cut(s) 300
Bst2UI CCWGG 2 cut(s) 228, 997
Bst4CI ACNGT 7 cut(s) 18, 66, 188, 593, 1345, 1351, 1427
BstAUI TGTACA 1 cut(s) 469
BstC8I GCNNGC 2 cut(s) 210, 981
BstDEI CTNAG 8 cut(s) 321, 354, 614, 680, 780, 897, 1095, 1362
BstENI CCTNNNNNAGG 1 cut(s) 842
BstF5I GGATG 4 cut(s) 739, 970, 1180, 1237
BstFNI CGCG 1 cut(s) 1381
BstHHI GCGC 3 cut(s) 398, 1073, 1381
BstKTI GATC 7 cut(s) 82, 146, 571, 769, 813, 888, 1211
BstMAI GTCTC 2 cut(s) 303, 1293
BstMBI GATC 7 cut(s) 79, 143, 568, 766, 810, 885, 1208
BstMWI GCNNNNNNNGC 3 cut(s) 245, 359, 1221
BstNI CCWGG 2 cut(s) 228, 997
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 4 cut(s) 226, 995, 1262, 1263
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 5 cut(s) 364, 436, 508, 529, 625
BstUI CGCG 1 cut(s) 1381
BstV1I GCAGC 3 cut(s) 235, 1059, 1326
BstX2I RGATCY 5 cut(s) 79, 143, 766, 885, 1208
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 5 cut(s) 79, 143, 766, 885, 1208
BsuI GTATCC 2 cut(s) 332, 937
BsuRI GGCC 3 cut(s) 995, 1001, 1262
BtsCI GGATG 4 cut(s) 739, 970, 1180, 1237
BtsI GCAGTG 2 cut(s) 282, 1342
BtsIMutI CAGTG 6 cut(s) 193, 282, 598, 1100, 1342, 1367
BveI ACCTGC 2 cut(s) 1041, 1308
Cac8I GCNNGC 2 cut(s) 210, 981
CaiI CAGNNNCTG 2 cut(s) 1102, 1369
CfoI GCGC 3 cut(s) 398, 1073, 1381
Cfr13I GGNCC 3 cut(s) 35, 999, 1261
Cfr9I CCCGGG 1 cut(s) 1263
CseI GACGC 1 cut(s) 1370
Csp6I GTAC 5 cut(s) 470, 688, 776, 784, 1141
CviAII CATG 8 cut(s) 30, 49, 455, 491, 512, 587, 626, 1118
CviQI GTAC 5 cut(s) 470, 688, 776, 784, 1141
DdeI CTNAG 8 cut(s) 321, 354, 614, 680, 780, 897, 1095, 1362
DpnI GATC 7 cut(s) 81, 145, 570, 768, 812, 887, 1210
DpnII GATC 7 cut(s) 79, 143, 568, 766, 810, 885, 1208
DraIII CACNNNGTG 1 cut(s) 629
EaeI YGGCCR 1 cut(s) 993
EciI GGCGGA 2 cut(s) 255, 500
Eco130I CCWWGG 1 cut(s) 838
Eco47I GGWCC 1 cut(s) 35
Eco57I CTGAAG 2 cut(s) 75, 1316
Eco88I CYCGRG 1 cut(s) 1263
EcoNI CCTNNNNNAGG 1 cut(s) 842
EcoRII CCWGG 2 cut(s) 226, 995
EcoT14I CCWWGG 1 cut(s) 838
ErhI CCWWGG 1 cut(s) 838
FaeI CATG 8 cut(s) 33, 52, 458, 494, 515, 590, 629, 1121
FatI CATG 8 cut(s) 29, 48, 454, 490, 511, 586, 625, 1117
FauI CCCGC 1 cut(s) 267
FauNDI CATATG 1 cut(s) 40
FbaI TGATCA 2 cut(s) 568, 810
Fnu4HI GCNGC 3 cut(s) 224, 1048, 1315
FokI GGATG 4 cut(s) 746, 977, 1187, 1244
Fsp4HI GCNGC 3 cut(s) 224, 1048, 1315
FspBI CTAG 2 cut(s) 153, 929
GlaI GCGC 3 cut(s) 397, 1072, 1380
GluI GCNGC 3 cut(s) 224, 1048, 1315
HaeIII GGCC 3 cut(s) 995, 1001, 1262
HapII CCGG 3 cut(s) 215, 336, 1264
HgaI GACGC 1 cut(s) 1370
HhaI GCGC 3 cut(s) 398, 1073, 1381
Hin1II CATG 8 cut(s) 33, 52, 458, 494, 515, 590, 629, 1121
Hin6I GCGC 3 cut(s) 396, 1071, 1379
HinP1I GCGC 3 cut(s) 396, 1071, 1379
HindIII AAGCTT 2 cut(s) 326, 746
HinfI GANTC 3 cut(s) 121, 557, 932
HpaII CCGG 3 cut(s) 215, 336, 1264
HphI GGTGA 5 cut(s) 245, 644, 1136, 1403, 1433
Hpy166II GTNNAC 5 cut(s) 362, 434, 470, 527, 623
Hpy188I TCNGA 4 cut(s) 120, 664, 733, 1174
Hpy188III TCNNGA 7 cut(s) 125, 215, 242, 302, 892, 929, 1157
Hpy8I GTNNAC 5 cut(s) 362, 434, 470, 527, 623
HpyAV CCTTC 1 cut(s) 99
HpyCH4III ACNGT 7 cut(s) 18, 66, 188, 593, 1345, 1351, 1427
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 359, 1221
HpyF3I CTNAG 8 cut(s) 321, 354, 614, 680, 780, 897, 1095, 1362
Hsp92II CATG 8 cut(s) 33, 52, 458, 494, 515, 590, 629, 1121
HspAI GCGC 3 cut(s) 396, 1071, 1379
Kpn2I TCCGGA 1 cut(s) 214
KpnI GGTACC 1 cut(s) 779
Ksp22I TGATCA 2 cut(s) 568, 810
Kzo9I GATC 7 cut(s) 79, 143, 568, 766, 810, 885, 1208
LmnI GCTCC 3 cut(s) 217, 244, 1027
Lsp1109I GCAGC 3 cut(s) 235, 1059, 1326
LweI GCATC 5 cut(s) 235, 955, 1123, 1222, 1233
MaeI CTAG 2 cut(s) 153, 929
MaeIII GTNAC 5 cut(s) 1098, 1345, 1365, 1391, 1421
MalI GATC 7 cut(s) 81, 145, 570, 768, 812, 887, 1210
MboI GATC 7 cut(s) 79, 143, 568, 766, 810, 885, 1208
MboII GAAGA 5 cut(s) 776, 814, 880, 1049, 1316
MflI RGATCY 5 cut(s) 79, 143, 766, 885, 1208
MhlI GDGCHC 7 cut(s) 364, 436, 508, 529, 625, 1191, 1252
MlsI TGGCCA 1 cut(s) 995
MluNI TGGCCA 1 cut(s) 995
MmeI TCCRAC 2 cut(s) 107, 1281
Mox20I TGGCCA 1 cut(s) 995
MroI TCCGGA 1 cut(s) 214
MscI TGGCCA 1 cut(s) 995
MseI TTAA 4 cut(s) 477, 654, 909, 1203
MslI CAYNNNNRTG 4 cut(s) 591, 630, 1122, 1389
Msp20I TGGCCA 1 cut(s) 995
MspA1I CMGCKG 2 cut(s) 1027, 1294
MspI CCGG 3 cut(s) 215, 336, 1264
MspR9I CCNGG 4 cut(s) 228, 997, 1264, 1265
MvaI CCWGG 2 cut(s) 228, 997
MvnI CGCG 1 cut(s) 1381
MwoI GCNNNNNNNGC 3 cut(s) 245, 359, 1221
NciI CCSGG 2 cut(s) 1264, 1265
NdeI CATATG 1 cut(s) 40
NdeII GATC 7 cut(s) 79, 143, 568, 766, 810, 885, 1208
NlaIII CATG 8 cut(s) 33, 52, 458, 494, 515, 590, 629, 1121
NlaIV GGNNCC 5 cut(s) 81, 240, 505, 777, 1023
NmuCI GTSAC 5 cut(s) 1098, 1345, 1365, 1391, 1421
NspI RCATGY 1 cut(s) 33
PfeI GAWTC 3 cut(s) 121, 557, 932
PkrI GCNGC 3 cut(s) 225, 1049, 1316
Psp6I CCWGG 2 cut(s) 226, 995
PspGI CCWGG 2 cut(s) 226, 995
PspN4I GGNNCC 5 cut(s) 81, 240, 505, 777, 1023
PspPI GGNCC 3 cut(s) 35, 999, 1261
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 2 cut(s) 1102, 1369
PsuI RGATCY 5 cut(s) 79, 143, 766, 885, 1208
RsaI GTAC 5 cut(s) 471, 689, 777, 785, 1142
RsaNI GTAC 5 cut(s) 470, 688, 776, 784, 1141
RseI CAYNNNNRTG 4 cut(s) 591, 630, 1122, 1389
SaqAI TTAA 4 cut(s) 477, 654, 909, 1203
SatI GCNGC 3 cut(s) 224, 1048, 1315
Sau3AI GATC 7 cut(s) 79, 143, 568, 766, 810, 885, 1208
Sau96I GGNCC 3 cut(s) 35, 999, 1261
ScrFI CCNGG 4 cut(s) 228, 997, 1264, 1265
SduI GDGCHC 7 cut(s) 364, 436, 508, 529, 625, 1191, 1252
SfaNI GCATC 5 cut(s) 235, 955, 1123, 1222, 1233
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 1 cut(s) 35
SmaI CCCGGG 1 cut(s) 1265
SmiMI CAYNNNNRTG 4 cut(s) 591, 630, 1122, 1389
SmlI CTYRAG 1 cut(s) 743
SmoI CTYRAG 1 cut(s) 743
SrfI GCCCGGGC 1 cut(s) 1265
SsiI CCGC 6 cut(s) 260, 266, 485, 773, 1025, 1292
SspMI CTAG 2 cut(s) 153, 929
StyD4I CCNGG 4 cut(s) 226, 995, 1262, 1263
StyI CCWWGG 1 cut(s) 838
TaaI ACNGT 7 cut(s) 18, 66, 188, 593, 1345, 1351, 1427
TaqI TCGA 1 cut(s) 893
TatI WGTACW 3 cut(s) 469, 783, 1140
TfiI GAWTC 3 cut(s) 121, 557, 932
Tru1I TTAA 4 cut(s) 477, 654, 909, 1203
Tru9I TTAA 4 cut(s) 477, 654, 909, 1203
TscAI CASTG 6 cut(s) 193, 282, 598, 1107, 1342, 1374
TseFI GTSAC 5 cut(s) 1098, 1345, 1365, 1391, 1421
TseI GCWGC 3 cut(s) 223, 1047, 1314
Tsp45I GTSAC 5 cut(s) 1098, 1345, 1365, 1391, 1421
TspDTI ATGAA 3 cut(s) 539, 687, 866
TspGWI ACGGA 1 cut(s) 154
TspMI CCCGGG 1 cut(s) 1263
TspRI CASTG 6 cut(s) 193, 282, 598, 1107, 1342, 1374
VneI GTGCAC 4 cut(s) 360, 432, 525, 621
VpaK11BI GGWCC 1 cut(s) 35
XagI CCTNNNNNAGG 1 cut(s) 842
XapI RAATTY 3 cut(s) 114, 305, 1030
XbaI TCTAGA 1 cut(s) 928
XceI RCATGY 1 cut(s) 33
XmaI CCCGGG 1 cut(s) 1263
XspI CTAG 2 cut(s) 153, 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.