Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001982

Physical Location & Seq

Genomic Coordinates Forward (+)

59407046 .. 59408830

Gene Structure 1785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004442

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCAAAGGGCTTTTCTCATTTGGCAGACAGCCTCGATGACCTTGCTCTTGACATTCCATCAGCAAAAACCTTGTTCCAGTCACTGGTCCCCAAGGCAATATTTGAAGGTTGGCTTGATGATTCATTTGTGGAATCCTTAAGTGCAGATGGTGAGGTGCAAGTTGGAGATGAAAAGGTGAGGCAGTACGAGAAAGAGATTGTGTCCATAATTCACGAATACTTTCTCTCGGATGATATTCCCGAGCTCATTGAAAGCCTTGAAGATCTTGCAGCACCTGAGTATAATCCCATATTCTTGAAGAAGCTGATCACACTTGCAATGGATGGAAAGAACCGTGAAAAGGAAATGGCATCTTTTCTGCTTTCTGCCCTTCATACTGAGATCTTCTCGGCCGAGGACAAAGTTAATGGATTTGTCTTGCTTCTGGAATCTGCAGAGGATACAGAGTTGGACAACTTGGATGCTTCAATTGAGCTTGCTCTCTTTTTAGCCAGGGCCGTGATCGATGATGTGTTGGCTCCACTGAATTTGGAAGAAATTGGCGTTGCGTTGGAGGCTCTTCCTCTTTTTGGACTTCATCAACGTCTTTGGGGTTCAAGAAGCTCGGCTGGTTGGTTGAAGAAAGCAGTTCTGCCCAGATCCTATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05205 ko05206 map05205 map05206

Pfam Domains

Protein Families

MA3

Protein Analysis

218

Amino Acids

24.09

Weight (kDa)

4.36

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MA3	PF02847	1 - 40	8.2e-06	MA3 domain
MA3	PF02847	64 - 173	1.6e-23	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48390 AT4G24800 AT4G24800 AT4G24800 AT4G24800 AT5G63190 AT5G63190
fragaria_vesca	FvH4_5g07020
malus_domestica	MD06G1160300.v1.1 MD14G1166300.v1.1
prunus_persica	Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1
pyrus_communis	pycom14g13890
rosa_chinensis	RchiOBHm_Chr7g0191511 RchiOBHm_Chr7g0191601 RchiOBHm_Chr7g0191611 RchiOBHm_Chr7g0191661
rosa_laevigata	RLG00000004436 RLG00000004439 RLG00000004442
rosa_multiflora	Rmu_sc0001123.1_g000008 Rmu_sc0003634.1_g000005 Rmu_sc0010599.1_g000004 Rmu_sc0010599.1_g000006 Rmu_sc0018698.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438450 Rroxscaffold_157G00438480 Rroxscaffold_3G00263670 Rroxscaffold_3G00263720
rosa_rugosa	Rorug06G0510500 Rorug06G0510700
rosa_samantha	Rh7AG119000 Rh7AG119300 Rh7AG119600 Rh7BG121500 Rh7BG121800 Rh7CG123800 Rh7CG124200 Rh7CG124600 Rh7DG121900 Rh7DG122400 Rh7DG122600
rosa_wichuraiana	Rw7G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	85
AclWI	GGATC	1 cut(s)	636
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	529
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	3 cut(s)	85, 343, 572
AflII	CTTAAG	1 cut(s)	139
AgsI	TTSAA	7 cut(s)	107, 254, 263, 301, 471, 600, 622
AjnI	CCWGG	1 cut(s)	494
AluBI	AGCT	4 cut(s)	247, 307, 478, 606
AluI	AGCT	4 cut(s)	247, 307, 478, 606
Alw21I	GWGCWC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	636
AlwNI	CAGNNNCTG	2 cut(s)	85, 278
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	2 cut(s)	393, 498
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	529
Asp700I	GAANNNNTTC	1 cut(s)	222
AspS9I	GGNCC	2 cut(s)	88, 498
AsuHPI	GGTGA	2 cut(s)	164, 190
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	3 cut(s)	67, 143, 320
BceAI	ACGGC	1 cut(s)	485
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	496
BciVI	GTATCC	1 cut(s)	436
BclI	TGATCA	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	435
BfrI	CTTAAG	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	436
BglII	AGATCT	2 cut(s)	265, 384
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	496
Bme18I	GGWCC	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	88, 498
BmiI	GGNNCC	2 cut(s)	90, 522
BmrFI	CCNGG	1 cut(s)	496
BmsI	GCATC	2 cut(s)	362, 454
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
Bsa29I	ATCGAT	1 cut(s)	507
BsaJI	CCNNGG	3 cut(s)	93, 396, 495
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 343, 572
Bse1I	ACTGG	2 cut(s)	79, 90
Bse3DI	GCAATG	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	496
BseCI	ATCGAT	1 cut(s)	507
BseDI	CCNNGG	3 cut(s)	93, 396, 495
BseGI	GGATG	3 cut(s)	238, 331, 469
BseLI	CCNNNNNNNGG	3 cut(s)	85, 343, 572
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	270, 372
BseNI	ACTGG	2 cut(s)	79, 90
BseX3I	CGGCCG	1 cut(s)	393
BseXI	GCAGC	1 cut(s)	284
BsgI	GTGCAG	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	396
BshFI	GGCC	2 cut(s)	395, 500
BshVI	ATCGAT	1 cut(s)	507
BsiEI	CGRYCG	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	3 cut(s)	85, 343, 572
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	395, 500
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	5 cut(s)	265, 309, 384, 504, 641
BspANI	GGCC	2 cut(s)	395, 500
BspCNI	CTCAG	2 cut(s)	271, 373
BspDI	ATCGAT	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	90, 522
BspMAI	CTGCAG	1 cut(s)	439
BspPI	GGATC	1 cut(s)	636
BspQI	GCTCTTC	1 cut(s)	567
BspTI	CTTAAG	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	79, 90
BssECI	CCNNGG	3 cut(s)	93, 396, 495
BssMI	GATC	5 cut(s)	265, 309, 384, 504, 641
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	496
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	567
BstAFI	CTTAAG	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	2 cut(s)	279, 381
BstF5I	GGATG	3 cut(s)	238, 331, 469
BstKTI	GATC	5 cut(s)	268, 312, 387, 507, 644
BstMBI	GATC	5 cut(s)	265, 309, 384, 504, 641
BstMCI	CGRYCG	1 cut(s)	396
BstMWI	GCNNNNNNNGC	1 cut(s)	557
BstNI	CCWGG	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	494
BstSFI	CTRYAG	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	284
BstX2I	RGATCY	3 cut(s)	265, 384, 641
BstYI	RGATCY	3 cut(s)	265, 384, 641
BstZI	CGGCCG	1 cut(s)	393
Bsu15I	ATCGAT	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	395, 500
BsuTUI	ATCGAT	1 cut(s)	507
BtsCI	GGATG	3 cut(s)	238, 331, 469
BtsIMutI	CAGTG	2 cut(s)	83, 524
Cac8I	GCNNGC	1 cut(s)	480
CaiI	CAGNNNCTG	2 cut(s)	85, 278
Cfr13I	GGNCC	2 cut(s)	88, 498
ClaI	ATCGAT	1 cut(s)	507
Csp6I	GTAC	1 cut(s)	187
CspCI	CAANNNNNGTGG	2 cut(s)	513, 548
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	2 cut(s)	279, 381
DpnI	GATC	5 cut(s)	267, 311, 386, 506, 643
DpnII	GATC	5 cut(s)	265, 309, 384, 504, 641
EaeI	YGGCCR	1 cut(s)	393
EagI	CGGCCG	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
Ecl136II	GAGCTC	1 cut(s)	247
EclXI	CGGCCG	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	88
Eco52I	CGGCCG	1 cut(s)	393
Eco53kI	GAGCTC	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	494
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	93
FaiI	YATR	4 cut(s)	209, 285, 293, 378
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	1 cut(s)	74
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	3 cut(s)	245, 338, 476
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	273
GluI	GCNGC	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	395, 500
HinfI	GANTC	3 cut(s)	122, 134, 431
HphI	GGTGA	2 cut(s)	164, 190
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	6 cut(s)	50, 215, 242, 298, 428, 600
HpyAV	CCTTC	2 cut(s)	101, 383
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	5 cut(s)	146, 160, 272, 320, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	557
HpyF3I	CTNAG	2 cut(s)	279, 381
HpySE526I	ACGT	1 cut(s)	586
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	5 cut(s)	265, 309, 384, 504, 641
LguI	GCTCTTC	1 cut(s)	567
LmnI	GCTCC	1 cut(s)	526
LpnPI	CCDG	7 cut(s)	71, 92, 291, 413, 481, 508, 597
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	2 cut(s)	362, 454
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	5 cut(s)	267, 311, 386, 506, 643
MboI	GATC	5 cut(s)	265, 309, 384, 504, 641
MboII	GAAGA	6 cut(s)	275, 313, 379, 548, 554, 634
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	3 cut(s)	265, 384, 641
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	4 cut(s)	210, 471, 529, 540
MmeI	TCCRAC	3 cut(s)	145, 432, 534
MnlI	CCTC	7 cut(s)	44, 148, 174, 391, 433, 550, 576
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	2 cut(s)	140, 408
MspCI	CTTAAG	1 cut(s)	139
MspR9I	CCNGG	1 cut(s)	496
MunI	CAATTG	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	496
MwoI	GCNNNNNNNGC	1 cut(s)	557
NdeII	GATC	5 cut(s)	265, 309, 384, 504, 641
NlaIV	GGNNCC	2 cut(s)	90, 522
NmeAIII	GCCGAG	3 cut(s)	371, 421, 587
NmuCI	GTSAC	1 cut(s)	81
PciSI	GCTCTTC	1 cut(s)	567
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	3 cut(s)	122, 134, 431
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	494
PspGI	CCWGG	1 cut(s)	494
PspN4I	GGNNCC	2 cut(s)	90, 522
PspPI	GGNCC	2 cut(s)	88, 498
PstI	CTGCAG	1 cut(s)	439
PstNI	CAGNNNCTG	2 cut(s)	85, 278
PsuI	RGATCY	3 cut(s)	265, 384, 641
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SacI	GAGCTC	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	567
SaqAI	TTAA	2 cut(s)	140, 408
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	5 cut(s)	265, 309, 384, 504, 641
Sau96I	GGNCC	2 cut(s)	88, 498
ScrFI	CCNGG	1 cut(s)	496
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	2 cut(s)	362, 454
SfcI	CTRYAG	1 cut(s)	435
SinI	GGWCC	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
Sse9I	AATT	4 cut(s)	210, 471, 529, 540
SspI	AATATT	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	494
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	2 cut(s)	36, 507
TasI	AATT	4 cut(s)	210, 471, 529, 540
TfiI	GAWTC	3 cut(s)	122, 134, 431
Tru1I	TTAA	2 cut(s)	140, 408
Tru9I	TTAA	2 cut(s)	140, 408
TscAI	CASTG	2 cut(s)	90, 531
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	4 cut(s)	114, 186, 365, 569
TspRI	CASTG	2 cut(s)	90, 531
Van91I	CCANNNNNTGG	1 cut(s)	85
Vha464I	CTTAAG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	1 cut(s)	529
XmnI	GAANNNNTTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.