Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001982

Physical Location & Seq

Genomic Coordinates Forward (+)

10378480 .. 10378965

Gene Structure 486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG122400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCATCTGTTCTGCTTTCTGCACTTCATATTGAGATCTTCTCGACTGAGGACATAGTTAATGGATTTTTCTTGCTTCTAGAATCTGCACAGGATACAGAATTGGACATCTTGGATGCTTCAAATGAGCTAGCTTTCTTTCTGGCCAGGGCCGTGATTGATGATGTGTTGGCTCCGCTGAATTTGGAAGAAATTGGCAGCAGGTTGCCACCAAATTATAGCTCAACTGAGACTATGCAAATGGCTCAGTCACTGGTTTCTGTGCATCATGCTGGTGAATATGCGAGGCAGTACAAGTCCATAATTCAGGAATACTTTTTCTCGGATGATATTCCCGTGCTCATTCAAAGCCTTAAAGATCTTGCGGTACCCGAGCATAATCCCATTTTTGTGAAGAAGCTGATCATACTTGCAATGGATGGAAAGAACCGTGAAAAGGAAATGGCTGCCGTTCTACTTTCTTCCCTTCATATTGAGACATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05205 ko05206 map05205 map05206

Pfam Domains

Protein Families

MA3

Protein Analysis

161

Amino Acids

18.03

Weight (kDa)

4.51

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MA3	PF02847	1 - 57	2.8e-08	MA3 domain
MA3	PF02847	96 - 157	9.8e-11	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48390 AT4G24800 AT4G24800 AT4G24800 AT4G24800 AT5G63190 AT5G63190
fragaria_vesca	FvH4_5g07020
malus_domestica	MD06G1160300.v1.1 MD14G1166300.v1.1
prunus_persica	Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1
pyrus_communis	pycom14g13890
rosa_chinensis	RchiOBHm_Chr7g0191511 RchiOBHm_Chr7g0191601 RchiOBHm_Chr7g0191611 RchiOBHm_Chr7g0191661
rosa_laevigata	RLG00000004436 RLG00000004439 RLG00000004442
rosa_multiflora	Rmu_sc0001123.1_g000008 Rmu_sc0003634.1_g000005 Rmu_sc0010599.1_g000004 Rmu_sc0010599.1_g000006 Rmu_sc0018698.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438450 Rroxscaffold_157G00438480 Rroxscaffold_3G00263670 Rroxscaffold_3G00263720
rosa_rugosa	Rorug06G0510500 Rorug06G0510700
rosa_samantha	Rh7AG119000 Rh7AG119300 Rh7AG119600 Rh7BG121500 Rh7BG121800 Rh7CG123800 Rh7CG124200 Rh7CG124600 Rh7DG121900 Rh7DG122400 Rh7DG122600
rosa_wichuraiana	Rw7G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	192
Acc65I	GGTACC	1 cut(s)	367
AccB1I	GGYRCC	1 cut(s)	367
AciI	CCGC	2 cut(s)	176, 365
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	181
AfaI	GTAC	2 cut(s)	293, 369
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	123, 347
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	4 cut(s)	130, 134, 222, 400
AluI	AGCT	4 cut(s)	130, 134, 222, 400
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	2 cut(s)	224, 470
AlwNI	CAGNNNCTG	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	2 cut(s)	144, 150
ApeKI	GCWGC	2 cut(s)	198, 446
ApoI	RAATTY	1 cut(s)	181
Asp718I	GGTACC	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	287
AsuNHI	GCTAGC	1 cut(s)	130
AvaI	CYCGRG	1 cut(s)	371
BalI	TGGCCA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	210, 433
BccI	CCATC	1 cut(s)	413
BceAI	ACGGC	2 cut(s)	137, 434
BciT130I	CCWGG	1 cut(s)	148
BciVI	GTATCC	1 cut(s)	88
BclI	TGATCA	1 cut(s)	402
BcoDI	GTCTC	2 cut(s)	224, 470
BfaI	CTAG	2 cut(s)	80, 131
BfuAI	ACCTGC	1 cut(s)	192
BfuI	GTATCC	1 cut(s)	88
BglII	AGATCT	2 cut(s)	36, 358
BisI	GCNGC	2 cut(s)	199, 447
BlsI	GCNGC	2 cut(s)	200, 448
Bme1390I	CCNGG	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	2 cut(s)	174, 369
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	3 cut(s)	14, 106, 274
BmtI	GCTAGC	1 cut(s)	134
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	258
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	3 cut(s)	121, 331, 424
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	3 cut(s)	39, 219, 260
BseNI	ACTGG	1 cut(s)	258
BseXI	GCAGC	2 cut(s)	210, 433
BsgI	GTGCAG	2 cut(s)	6, 72
BshFI	GGCC	2 cut(s)	146, 152
BshNI	GGYRCC	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	342
BsiHKCI	CYCGRG	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	2 cut(s)	224, 470
BsnI	GGCC	2 cut(s)	146, 152
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	3 cut(s)	36, 358, 402
BspACI	CCGC	2 cut(s)	176, 365
BspANI	GGCC	2 cut(s)	146, 152
BspCNI	CTCAG	3 cut(s)	40, 220, 259
BspLI	GGNNCC	2 cut(s)	174, 369
BspMI	ACCTGC	1 cut(s)	192
BspOI	GCTAGC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	3 cut(s)	36, 358, 402
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	3 cut(s)	48, 228, 246
BstF5I	GGATG	3 cut(s)	121, 331, 424
BstKTI	GATC	3 cut(s)	39, 361, 405
BstMAI	GTCTC	2 cut(s)	224, 470
BstMBI	GATC	3 cut(s)	36, 358, 402
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	146
BstV1I	GCAGC	2 cut(s)	210, 433
BstX2I	RGATCY	2 cut(s)	36, 358
BstYI	RGATCY	2 cut(s)	36, 358
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	146, 152
BtsCI	GGATG	3 cut(s)	121, 331, 424
BtsIMutI	CAGTG	1 cut(s)	251
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	292, 368
CviAII	CATG	1 cut(s)	269
CviQI	GTAC	2 cut(s)	292, 368
DdeI	CTNAG	3 cut(s)	48, 228, 246
DpnI	GATC	3 cut(s)	38, 360, 404
DpnII	GATC	3 cut(s)	36, 358, 402
EaeI	YGGCCR	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	146
FaeI	CATG	1 cut(s)	272
FatI	CATG	1 cut(s)	268
FbaI	TGATCA	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	199, 447
FokI	GGATG	3 cut(s)	128, 338, 431
Fsp4HI	GCNGC	2 cut(s)	199, 447
FspBI	CTAG	2 cut(s)	80, 131
GluI	GCNGC	2 cut(s)	199, 447
HaeIII	GGCC	2 cut(s)	146, 152
Hin1II	CATG	1 cut(s)	272
HinfI	GANTC	1 cut(s)	83
HphI	GGTGA	1 cut(s)	287
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	3 cut(s)	43, 80, 308
HpyAV	CCTTC	1 cut(s)	476
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4V	TGCA	5 cut(s)	23, 89, 238, 265, 413
HpyF3I	CTNAG	3 cut(s)	48, 228, 246
Hsp92II	CATG	1 cut(s)	272
KpnI	GGTACC	1 cut(s)	371
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	3 cut(s)	36, 358, 402
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	8 cut(s)	77, 128, 133, 160, 187, 239, 258, 293
Lsp1109I	GCAGC	2 cut(s)	210, 433
LweI	GCATC	3 cut(s)	14, 106, 274
MaeI	CTAG	2 cut(s)	80, 131
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	3 cut(s)	38, 360, 404
MboI	GATC	3 cut(s)	36, 358, 402
MboII	GAAGA	4 cut(s)	31, 200, 406, 453
MflI	RGATCY	2 cut(s)	36, 358
MhlI	GDGCHC	1 cut(s)	342
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	5 cut(s)	101, 181, 192, 214, 303
MluNI	TGGCCA	1 cut(s)	146
MnlI	CCTC	2 cut(s)	43, 279
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	2 cut(s)	60, 354
MslI	CAYNNNNRTG	2 cut(s)	273, 389
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
NdeII	GATC	3 cut(s)	36, 358, 402
NheI	GCTAGC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	2 cut(s)	174, 369
NmuCI	GTSAC	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	200, 448
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	174, 369
PspPI	GGNCC	1 cut(s)	150
PstNI	CAGNNNCTG	1 cut(s)	253
PsuI	RGATCY	2 cut(s)	36, 358
RsaI	GTAC	2 cut(s)	293, 369
RsaNI	GTAC	2 cut(s)	292, 368
RseI	CAYNNNNRTG	2 cut(s)	273, 389
SaqAI	TTAA	2 cut(s)	60, 354
SatI	GCNGC	2 cut(s)	199, 447
Sau3AI	GATC	3 cut(s)	36, 358, 402
Sau96I	GGNCC	1 cut(s)	150
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	5 cut(s)	132, 136, 206, 224, 402
SfaNI	GCATC	3 cut(s)	14, 106, 274
SmiMI	CAYNNNNRTG	2 cut(s)	273, 389
Sse9I	AATT	5 cut(s)	101, 181, 192, 214, 303
SsiI	CCGC	2 cut(s)	176, 365
SspMI	CTAG	2 cut(s)	80, 131
StyD4I	CCNGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	431
TaqI	TCGA	1 cut(s)	44
TasI	AATT	5 cut(s)	101, 181, 192, 214, 303
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	60, 354
Tru9I	TTAA	2 cut(s)	60, 354
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	249
TseI	GCWGC	2 cut(s)	198, 446
Tsp45I	GTSAC	1 cut(s)	249
TspDTI	ATGAA	2 cut(s)	17, 458
TspRI	CASTG	1 cut(s)	258
XapI	RAATTY	1 cut(s)	181
XbaI	TCTAGA	1 cut(s)	79
XspI	CTAG	2 cut(s)	80, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.