Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001982

Physical Location & Seq

Genomic Coordinates Forward (+)

10331520 .. 10332510

Gene Structure 991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17124

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCATCTGTTCTGCTTTCTGCACTTCATATTGAGATCTTCTCGACTGAGGACATAGTTAATGGATTTGTCTTGCTTCTAGAATCTGCACAGGATACAGAATTGGACATCTTGGATGCTTCAAATGAGCTTGCTTTCTTTCTGGCCAGGGCCGTGATTGATGATGTGTTGGCTCCGCTGAATTTGGAAGAAATTGGCAGCAGGTTGCCACCAAATTGTAGCTCAACTGAGACTGTGCAAATGGCTCAGTCACTGGTTTCTGTGCATCATGCTGGTGAATATGCGAGGCAGTACAAGTCCATAATTCAGGAATACTTTTTCTCGGATGATATTCCTGTGCTCATTCAAAGCCTTAAAGATCTTGCGGTACCCGAGCATAATCCCATTTTTGTGAAGAAGCTGGTCATACTTGCAATGGATGGAAAGAACCGTGAAAAGGAAATGGCTTCCTTAATGGATTTGTCTTGCTTCTGGAATATGCCGAGGATTCAGAATTGGGCATCTTGGATGCTTCAAATGAGTGCTCCCTATCTGGCCCGGGCTGTGGTTGATGATGTATTGTCTCCGCTGAAGTTGGAAGAAATTGGCAGCAGGTTGCCACCGAATTGCAGTGCAACTGTGACTGCGAATGGCTCAGTCACTGTTGGGACTGGCTGGGCTGTGGAGGATACGAAGGACAAGATTACAAAGCTCTTAGATTGGTATGAGAGTGGGGGTGTCGTGGCTGAAGCCTGCCAGTGCATTCGTGATATTGGAATGCCTTTCTTCAATCACGAGGTGGTGAAGAAGGCACTGGTTTTGGCCATGGAGAAGAATGGCACTATGCTGGATCTGCTTCAGGAGTGCTTCAGCGAAGGACTGATTAACAGTCAACCAGATGACAAAAGGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05205 ko05206 map05205 map05206

Pfam Domains

Protein Families

MA3

Protein Analysis

297

Amino Acids

32.95

Weight (kDa)

4.57

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MA3	PF02847	1 - 57	3.7e-08	MA3 domain
MA3	PF02847	96 - 152	3.7e-08	MA3 domain
MA3	PF02847	225 - 290	1.8e-14	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48390 AT4G24800 AT4G24800 AT4G24800 AT4G24800 AT5G63190 AT5G63190
fragaria_vesca	FvH4_5g07020
malus_domestica	MD06G1160300.v1.1 MD14G1166300.v1.1
prunus_persica	Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1
pyrus_communis	pycom14g13890
rosa_chinensis	RchiOBHm_Chr7g0191511 RchiOBHm_Chr7g0191601 RchiOBHm_Chr7g0191611 RchiOBHm_Chr7g0191661
rosa_laevigata	RLG00000004436 RLG00000004439 RLG00000004442
rosa_multiflora	Rmu_sc0001123.1_g000008 Rmu_sc0003634.1_g000005 Rmu_sc0010599.1_g000004 Rmu_sc0010599.1_g000006 Rmu_sc0018698.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438450 Rroxscaffold_157G00438480 Rroxscaffold_3G00263670 Rroxscaffold_3G00263720
rosa_rugosa	Rorug06G0510500 Rorug06G0510700
rosa_samantha	Rh7AG119000 Rh7AG119300 Rh7AG119600 Rh7BG121500 Rh7BG121800 Rh7CG123800 Rh7CG124200 Rh7CG124600 Rh7DG121900 Rh7DG122400 Rh7DG122600
rosa_wichuraiana	Rw7G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	192, 582
Acc65I	GGTACC	1 cut(s)	367
AccB1I	GGYRCC	1 cut(s)	367
AciI	CCGC	3 cut(s)	176, 365, 566
AclWI	GGATC	1 cut(s)	837
AcoI	YGGCCR	2 cut(s)	144, 801
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	4 cut(s)	590, 747, 821, 832
AdeI	CACNNNGTG	1 cut(s)	778
AfaI	GTAC	2 cut(s)	293, 369
AfiI	CCNNNNNNNGG	2 cut(s)	436, 544
AgsI	TTSAA	4 cut(s)	123, 347, 515, 769
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	4 cut(s)	130, 222, 400, 691
AluI	AGCT	4 cut(s)	130, 222, 400, 691
Alw21I	GWGCWC	2 cut(s)	342, 526
Alw26I	GTCTC	2 cut(s)	224, 567
AlwI	GGATC	1 cut(s)	837
AlwNI	CAGNNNCTG	2 cut(s)	253, 641
Ama87I	CYCGRG	2 cut(s)	371, 537
AoxI	GGCC	4 cut(s)	144, 150, 534, 801
ApeKI	GCWGC	2 cut(s)	198, 588
ApoI	RAATTY	1 cut(s)	181
Asp718I	GGTACC	1 cut(s)	367
AspS9I	GGNCC	2 cut(s)	150, 535
AsuC2I	CCSGG	2 cut(s)	538, 539
AsuHPI	GGTGA	2 cut(s)	287, 793
AvaI	CYCGRG	2 cut(s)	371, 537
BalI	TGGCCA	2 cut(s)	146, 803
BanI	GGYRCC	1 cut(s)	367
BauI	CACGAG	1 cut(s)	773
Bbv12I	GWGCWC	2 cut(s)	342, 526
BbvI	GCAGC	2 cut(s)	210, 600
BccI	CCATC	1 cut(s)	413
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	148
BciVI	GTATCC	2 cut(s)	88, 661
BcnI	CCSGG	2 cut(s)	538, 539
BcoDI	GTCTC	2 cut(s)	224, 567
BfaI	CTAG	1 cut(s)	80
BfuAI	ACCTGC	2 cut(s)	192, 582
BfuI	GTATCC	2 cut(s)	88, 661
BglII	AGATCT	2 cut(s)	36, 358
BisI	GCNGC	2 cut(s)	199, 589
BlsI	GCNGC	2 cut(s)	200, 590
Bme1390I	CCNGG	3 cut(s)	148, 538, 539
BmeT110I	CYCGRG	2 cut(s)	371, 537
BmgT120I	GGNCC	2 cut(s)	150, 535
BmiI	GGNNCC	2 cut(s)	174, 369
BmrFI	CCNGG	3 cut(s)	148, 538, 539
BmsI	GCATC	5 cut(s)	14, 106, 274, 498, 509
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpuMI	CCSGG	2 cut(s)	538, 539
BsaJI	CCNNGG	4 cut(s)	147, 482, 537, 804
Bsc4I	CCNNNNNNNGG	2 cut(s)	436, 544
Bse1I	ACTGG	4 cut(s)	258, 655, 736, 798
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	4 cut(s)	147, 482, 537, 804
BseGI	GGATG	4 cut(s)	121, 331, 424, 513
BseLI	CCNNNNNNNGG	2 cut(s)	436, 544
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	4 cut(s)	39, 219, 260, 648
BseNI	ACTGG	4 cut(s)	258, 655, 736, 798
BseXI	GCAGC	2 cut(s)	210, 600
BseYI	CCCAGC	1 cut(s)	654
BsgI	GTGCAG	2 cut(s)	6, 72
BshFI	GGCC	4 cut(s)	146, 152, 536, 803
BshNI	GGYRCC	1 cut(s)	367
BsiHKAI	GWGCWC	2 cut(s)	342, 526
BsiHKCI	CYCGRG	2 cut(s)	371, 537
BsiSI	CCGG	1 cut(s)	538
BslFI	GGGAC	1 cut(s)	661
BslI	CCNNNNNNNGG	2 cut(s)	436, 544
BsmAI	GTCTC	2 cut(s)	224, 567
BsmFI	GGGAC	1 cut(s)	661
BsmI	GAATGC	2 cut(s)	741, 762
BsnI	GGCC	4 cut(s)	146, 152, 536, 803
BsoBI	CYCGRG	2 cut(s)	371, 537
Bsp1286I	GDGCHC	2 cut(s)	342, 526
Bsp143I	GATC	3 cut(s)	36, 358, 829
Bsp19I	CCATGG	1 cut(s)	804
BspACI	CCGC	3 cut(s)	176, 365, 566
BspANI	GGCC	4 cut(s)	146, 152, 536, 803
BspCNI	CTCAG	4 cut(s)	40, 220, 259, 647
BspLI	GGNNCC	2 cut(s)	174, 369
BspMI	ACCTGC	2 cut(s)	192, 582
BspPI	GGATC	1 cut(s)	837
BspT107I	GGYRCC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	420
BsrI	ACTGG	4 cut(s)	258, 655, 736, 798
BssECI	CCNNGG	4 cut(s)	147, 482, 537, 804
BssMI	GATC	3 cut(s)	36, 358, 829
BssSI	CACGAG	1 cut(s)	773
BssT1I	CCWWGG	1 cut(s)	804
Bst2BI	CACGAG	1 cut(s)	773
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	5 cut(s)	235, 431, 619, 643, 869
BstC8I	GCNNGC	2 cut(s)	132, 733
BstDEI	CTNAG	5 cut(s)	48, 228, 246, 634, 694
BstDSI	CCRYGG	1 cut(s)	804
BstF5I	GGATG	4 cut(s)	121, 331, 424, 513
BstKTI	GATC	3 cut(s)	39, 361, 832
BstMAI	GTCTC	2 cut(s)	224, 567
BstMBI	GATC	3 cut(s)	36, 358, 829
BstMWI	GCNNNNNNNGC	1 cut(s)	832
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	3 cut(s)	146, 536, 537
BstV1I	GCAGC	2 cut(s)	210, 600
BstX2I	RGATCY	3 cut(s)	36, 358, 829
BstYI	RGATCY	3 cut(s)	36, 358, 829
BsuI	GTATCC	2 cut(s)	88, 661
BsuRI	GGCC	4 cut(s)	146, 152, 536, 803
BtgI	CCRYGG	1 cut(s)	804
BtsCI	GGATG	4 cut(s)	121, 331, 424, 513
BtsI	GCAGTG	1 cut(s)	616
BtsIMutI	CAGTG	5 cut(s)	251, 616, 639, 743, 791
BveI	ACCTGC	2 cut(s)	192, 582
Cac8I	GCNNGC	2 cut(s)	132, 733
CaiI	CAGNNNCTG	2 cut(s)	253, 641
Cfr13I	GGNCC	2 cut(s)	150, 535
Cfr9I	CCCGGG	1 cut(s)	537
Csp6I	GTAC	2 cut(s)	292, 368
CviAII	CATG	2 cut(s)	269, 805
CviQI	GTAC	2 cut(s)	292, 368
DdeI	CTNAG	5 cut(s)	48, 228, 246, 634, 694
DpnI	GATC	3 cut(s)	38, 360, 831
DpnII	GATC	3 cut(s)	36, 358, 829
DraIII	CACNNNGTG	1 cut(s)	778
EaeI	YGGCCR	2 cut(s)	144, 801
Eco130I	CCWWGG	1 cut(s)	804
Eco57I	CTGAAG	4 cut(s)	590, 747, 821, 832
Eco88I	CYCGRG	2 cut(s)	371, 537
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	804
ErhI	CCWWGG	1 cut(s)	804
FaeI	CATG	2 cut(s)	272, 808
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	2 cut(s)	268, 804
Fnu4HI	GCNGC	2 cut(s)	199, 589
FokI	GGATG	4 cut(s)	128, 338, 431, 520
Fsp4HI	GCNGC	2 cut(s)	199, 589
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	2 cut(s)	199, 589
GsaI	CCCAGC	1 cut(s)	658
HaeIII	GGCC	4 cut(s)	146, 152, 536, 803
HapII	CCGG	1 cut(s)	538
Hin1II	CATG	2 cut(s)	272, 808
HincII	GTYRAC	1 cut(s)	872
HindII	GTYRAC	1 cut(s)	872
HinfI	GANTC	2 cut(s)	83, 487
HpaII	CCGG	1 cut(s)	538
HphI	GGTGA	2 cut(s)	287, 793
Hpy166II	GTNNAC	1 cut(s)	872
Hpy188I	TCNGA	2 cut(s)	325, 492
Hpy188III	TCNNGA	7 cut(s)	43, 80, 308, 472, 746, 773, 839
Hpy8I	GTNNAC	1 cut(s)	872
HpyAV	CCTTC	3 cut(s)	667, 781, 848
HpyCH4III	ACNGT	5 cut(s)	235, 431, 619, 643, 869
HpyCH4V	TGCA	8 cut(s)	23, 89, 238, 265, 413, 609, 614, 741
HpyF10VI	GCNNNNNNNGC	1 cut(s)	832
HpyF3I	CTNAG	5 cut(s)	48, 228, 246, 634, 694
Hsp92II	CATG	2 cut(s)	272, 808
KpnI	GGTACC	1 cut(s)	371
Kzo9I	GATC	3 cut(s)	36, 358, 829
LmnI	GCTCC	2 cut(s)	178, 529
Lsp1109I	GCAGC	2 cut(s)	210, 600
LweI	GCATC	5 cut(s)	14, 106, 274, 498, 509
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	3 cut(s)	249, 619, 637
MalI	GATC	3 cut(s)	38, 360, 831
MboI	GATC	3 cut(s)	36, 358, 829
MboII	GAAGA	7 cut(s)	31, 200, 406, 590, 757, 796, 823
MflI	RGATCY	3 cut(s)	36, 358, 829
MhlI	GDGCHC	2 cut(s)	342, 526
MlsI	TGGCCA	2 cut(s)	146, 803
MluCI	AATT	8 cut(s)	101, 181, 192, 214, 303, 493, 582, 604
MluNI	TGGCCA	2 cut(s)	146, 803
MmeI	TCCRAC	1 cut(s)	555
MnlI	CCTC	5 cut(s)	43, 279, 477, 658, 769
Mox20I	TGGCCA	2 cut(s)	146, 803
MscI	TGGCCA	2 cut(s)	146, 803
MseI	TTAA	4 cut(s)	60, 354, 452, 864
MslI	CAYNNNNRTG	2 cut(s)	273, 389
Msp20I	TGGCCA	2 cut(s)	146, 803
MspA1I	CMGCKG	2 cut(s)	178, 568
MspI	CCGG	1 cut(s)	538
MspR9I	CCNGG	3 cut(s)	148, 538, 539
Mva1269I	GAATGC	2 cut(s)	741, 762
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	832
NciI	CCSGG	2 cut(s)	538, 539
NcoI	CCATGG	1 cut(s)	804
NdeII	GATC	3 cut(s)	36, 358, 829
NlaIII	CATG	2 cut(s)	272, 808
NlaIV	GGNNCC	2 cut(s)	174, 369
NmeAIII	GCCGAG	1 cut(s)	507
NmuCI	GTSAC	3 cut(s)	249, 619, 637
PctI	GAATGC	2 cut(s)	741, 762
PfeI	GAWTC	2 cut(s)	83, 487
PkrI	GCNGC	2 cut(s)	200, 590
Psp6I	CCWGG	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	174, 369
PspPI	GGNCC	2 cut(s)	150, 535
PstNI	CAGNNNCTG	2 cut(s)	253, 641
PsuI	RGATCY	3 cut(s)	36, 358, 829
RsaI	GTAC	2 cut(s)	293, 369
RsaNI	GTAC	2 cut(s)	292, 368
RseI	CAYNNNNRTG	2 cut(s)	273, 389
SaqAI	TTAA	4 cut(s)	60, 354, 452, 864
SatI	GCNGC	2 cut(s)	199, 589
Sau3AI	GATC	3 cut(s)	36, 358, 829
Sau96I	GGNCC	2 cut(s)	150, 535
ScrFI	CCNGG	3 cut(s)	148, 538, 539
SduI	GDGCHC	2 cut(s)	342, 526
SetI	ASST	7 cut(s)	132, 206, 224, 402, 596, 693, 780
SfaNI	GCATC	5 cut(s)	14, 106, 274, 498, 509
SmaI	CCCGGG	1 cut(s)	539
SmiMI	CAYNNNNRTG	2 cut(s)	273, 389
SrfI	GCCCGGGC	1 cut(s)	539
Sse9I	AATT	8 cut(s)	101, 181, 192, 214, 303, 493, 582, 604
SsiI	CCGC	3 cut(s)	176, 365, 566
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	3 cut(s)	146, 536, 537
StyI	CCWWGG	1 cut(s)	804
TaaI	ACNGT	5 cut(s)	235, 431, 619, 643, 869
TaqI	TCGA	1 cut(s)	44
TasI	AATT	8 cut(s)	101, 181, 192, 214, 303, 493, 582, 604
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	83, 487
Tru1I	TTAA	4 cut(s)	60, 354, 452, 864
Tru9I	TTAA	4 cut(s)	60, 354, 452, 864
TscAI	CASTG	5 cut(s)	258, 616, 646, 743, 798
TseFI	GTSAC	3 cut(s)	249, 619, 637
TseI	GCWGC	2 cut(s)	198, 588
Tsp45I	GTSAC	3 cut(s)	249, 619, 637
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	537
TspRI	CASTG	5 cut(s)	258, 616, 646, 743, 798
XapI	RAATTY	1 cut(s)	181
XbaI	TCTAGA	1 cut(s)	79
XmaI	CCCGGG	1 cut(s)	537
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.