Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001982

Physical Location & Seq

Genomic Coordinates Forward (+)

9636548 .. 9637351

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG124200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTCGGATTTTCTTTTGTTAGTGGATTTGGGTCTGTTCTTATATACTATTTACAGTGCATATCATTACACCCCGCCAGCTCCGGAGGTGCAGCCTGGGGTGGTGGCTCCTGCAGTGGCACTAAACAATGGTGCTCAGGGTGCACAGGGAAATCAGGGCGAGGAGGGCGCACAGGCAAATCAGGGCTATTTTCATTGTGAATCCCATATTGATCGTAATGACCCTAACCATGACAGTGGAGAGGAGAAATACCTACTTAGTGGTGCACATGGTGGTGAGGTTCAACTTGAAGCTGTTAAGGTATCATATGTAGATGAAAAGCTGAGGCAGTACCAGAATGAGATTGTGTCCATTATACACAAATACTTGCTCTCGGATGATATTCTCAAGCTTATTCAAAGCCTTGAAGATCTTGCGAAGCTGATCACACTTGCAGTAGATGGAAAGAACCTTGGAAAGGAAATCGCATCTGTTCTGCTTTCTGCGCTTCATATTGAGCTCTTCTCGACTGAGGACATAGTTAATGGATTTGTCTTGCTTCTGGAATCTGCAGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05205 ko05206 map05205 map05206

Pfam Domains

Protein Families

MA3

Protein Analysis

186

Amino Acids

20.34

Weight (kDa)

4.58

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48390 AT4G24800 AT4G24800 AT4G24800 AT4G24800 AT5G63190 AT5G63190
fragaria_vesca	FvH4_5g07020
malus_domestica	MD06G1160300.v1.1 MD14G1166300.v1.1
prunus_persica	Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1
pyrus_communis	pycom14g13890
rosa_chinensis	RchiOBHm_Chr7g0191511 RchiOBHm_Chr7g0191601 RchiOBHm_Chr7g0191611 RchiOBHm_Chr7g0191661
rosa_laevigata	RLG00000004436 RLG00000004439 RLG00000004442
rosa_multiflora	Rmu_sc0001123.1_g000008 Rmu_sc0003634.1_g000005 Rmu_sc0010599.1_g000004 Rmu_sc0010599.1_g000006 Rmu_sc0018698.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438450 Rroxscaffold_157G00438480 Rroxscaffold_3G00263670 Rroxscaffold_3G00263720
rosa_rugosa	Rorug06G0510500 Rorug06G0510700
rosa_samantha	Rh7AG119000 Rh7AG119300 Rh7AG119600 Rh7BG121500 Rh7BG121800 Rh7CG123800 Rh7CG124200 Rh7CG124600 Rh7DG121900 Rh7DG122400 Rh7DG122600
rosa_wichuraiana	Rw7G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	82
AciI	CCGC	1 cut(s)	74
AdeI	CACNNNGTG	1 cut(s)	272
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	4 cut(s)	284, 290, 398, 407
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	6 cut(s)	80, 293, 322, 391, 421, 499
AluI	AGCT	6 cut(s)	80, 293, 322, 391, 421, 499
Alw21I	GWGCWC	4 cut(s)	136, 145, 268, 501
Alw44I	GTGCAC	2 cut(s)	141, 264
Aor13HI	TCCGGA	1 cut(s)	82
ApaLI	GTGCAC	2 cut(s)	141, 264
ApeKI	GCWGC	1 cut(s)	91
AspLEI	GCGC	2 cut(s)	170, 487
AsuHPI	GGTGA	1 cut(s)	287
BaeGI	GKGCMC	2 cut(s)	145, 268
BanII	GRGCYC	1 cut(s)	501
Bbv12I	GWGCWC	4 cut(s)	136, 145, 268, 501
BbvCI	CCTCAGC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	434
BciT130I	CCWGG	1 cut(s)	96
BclI	TGATCA	1 cut(s)	423
BfmI	CTRYAG	2 cut(s)	111, 549
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	476
BplI	GAGNNNNNCTC	2 cut(s)	488, 520
Bpu10I	CCTNAGC	2 cut(s)	135, 323
BpuEI	CTTGAG	1 cut(s)	371
Bsa29I	ATCGAT	1 cut(s)	556
BsaJI	CCNNGG	2 cut(s)	95, 451
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
BseAI	TCCGGA	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	96
BseCI	ATCGAT	1 cut(s)	556
BseDI	CCNNGG	2 cut(s)	95, 451
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMII	CTCAG	3 cut(s)	149, 314, 501
BseRI	GAGGAG	2 cut(s)	176, 257
BseSI	GKGCMC	2 cut(s)	145, 268
BseXI	GCAGC	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	110
BshVI	ATCGAT	1 cut(s)	556
BsiHKAI	GWGCWC	4 cut(s)	136, 145, 268, 501
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	457
Bsp1286I	GDGCHC	4 cut(s)	136, 145, 268, 501
Bsp13I	TCCGGA	1 cut(s)	82
Bsp143I	GATC	4 cut(s)	211, 409, 423, 553
BspACI	CCGC	1 cut(s)	74
BspCNI	CTCAG	3 cut(s)	148, 315, 502
BspDI	ATCGAT	1 cut(s)	556
BspEI	TCCGGA	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	108
BspMAI	CTGCAG	2 cut(s)	115, 553
BspQI	GCTCTTC	1 cut(s)	506
BssECI	CCNNGG	2 cut(s)	95, 451
BssMI	GATC	4 cut(s)	211, 409, 423, 553
BssT1I	CCWWGG	1 cut(s)	451
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	2 cut(s)	56, 236
Bst6I	CTCTTC	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	4 cut(s)	135, 257, 323, 510
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	1 cut(s)	382
BstHHI	GCGC	2 cut(s)	170, 487
BstKTI	GATC	4 cut(s)	214, 412, 426, 556
BstMBI	GATC	4 cut(s)	211, 409, 423, 553
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 165, 484
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	94
BstSFI	CTRYAG	2 cut(s)	111, 549
BstSLI	GKGCMC	2 cut(s)	145, 268
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	409
BstXI	CCANNNNNNTGG	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	409
Bsu15I	ATCGAT	1 cut(s)	556
BsuTUI	ATCGAT	1 cut(s)	556
BtsCI	GGATG	1 cut(s)	382
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	3 cut(s)	61, 120, 241
Cac8I	GCNNGC	1 cut(s)	78
CfoI	GCGC	2 cut(s)	170, 487
ClaI	ATCGAT	1 cut(s)	556
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	2 cut(s)	230, 269
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	4 cut(s)	135, 257, 323, 510
DpnI	GATC	4 cut(s)	213, 411, 425, 555
DpnII	GATC	4 cut(s)	211, 409, 423, 553
DraIII	CACNNNGTG	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	506
EarI	CTCTTC	1 cut(s)	506
Ecl136II	GAGCTC	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	451
Eco24I	GRGCYC	1 cut(s)	501
Eco53kI	GAGCTC	1 cut(s)	499
EcoICRI	GAGCTC	1 cut(s)	499
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	451
FaeI	CATG	2 cut(s)	233, 272
FatI	CATG	2 cut(s)	229, 268
FauI	CCCGC	1 cut(s)	81
FauNDI	CATATG	1 cut(s)	307
FbaI	TGATCA	1 cut(s)	423
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	1 cut(s)	92
GlaI	GCGC	2 cut(s)	169, 486
GluI	GCNGC	1 cut(s)	92
HapII	CCGG	1 cut(s)	83
HhaI	GCGC	2 cut(s)	170, 487
Hin1II	CATG	2 cut(s)	233, 272
Hin6I	GCGC	2 cut(s)	168, 485
HinP1I	GCGC	2 cut(s)	168, 485
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	2 cut(s)	200, 545
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	2 cut(s)	143, 266
Hpy188I	TCNGA	2 cut(s)	7, 376
Hpy188III	TCNNGA	3 cut(s)	83, 505, 542
Hpy8I	GTNNAC	2 cut(s)	143, 266
HpyCH4III	ACNGT	2 cut(s)	56, 236
HpyCH4V	TGCA	7 cut(s)	59, 91, 113, 143, 266, 434, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 165, 484
HpyF3I	CTNAG	4 cut(s)	135, 257, 323, 510
Hsp92II	CATG	2 cut(s)	233, 272
HspAI	GCGC	2 cut(s)	168, 485
Kpn2I	TCCGGA	1 cut(s)	82
Ksp22I	TGATCA	1 cut(s)	423
Kzo9I	GATC	4 cut(s)	211, 409, 423, 553
LguI	GCTCTTC	1 cut(s)	506
LmnI	GCTCC	2 cut(s)	85, 112
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	476
MalI	GATC	4 cut(s)	213, 411, 425, 555
MboI	GATC	4 cut(s)	211, 409, 423, 553
MboII	GAAGA	2 cut(s)	419, 493
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	4 cut(s)	136, 145, 268, 501
MnlI	CCTC	7 cut(s)	79, 154, 157, 235, 271, 318, 505
MroI	TCCGGA	1 cut(s)	82
MseI	TTAA	2 cut(s)	297, 522
MslI	CAYNNNNRTG	2 cut(s)	234, 273
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	140, 165, 484
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	4 cut(s)	211, 409, 423, 553
NlaIII	CATG	2 cut(s)	233, 272
NlaIV	GGNNCC	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	506
PfeI	GAWTC	2 cut(s)	200, 545
PkrI	GCNGC	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	108
PstI	CTGCAG	2 cut(s)	115, 553
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	2 cut(s)	234, 273
SacI	GAGCTC	1 cut(s)	501
SapI	GCTCTTC	1 cut(s)	506
SaqAI	TTAA	2 cut(s)	297, 522
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	4 cut(s)	211, 409, 423, 553
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	4 cut(s)	136, 145, 268, 501
SfaNI	GCATC	1 cut(s)	476
SfcI	CTRYAG	2 cut(s)	111, 549
SmiMI	CAYNNNNRTG	2 cut(s)	234, 273
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SsiI	CCGC	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	1 cut(s)	451
TaaI	ACNGT	2 cut(s)	56, 236
TaqI	TCGA	2 cut(s)	506, 556
TfiI	GAWTC	2 cut(s)	200, 545
Tru1I	TTAA	2 cut(s)	297, 522
Tru9I	TTAA	2 cut(s)	297, 522
TscAI	CASTG	3 cut(s)	61, 120, 241
TseI	GCWGC	1 cut(s)	91
TspDTI	ATGAA	3 cut(s)	182, 330, 479
TspRI	CASTG	3 cut(s)	61, 120, 241
VneI	GTGCAC	2 cut(s)	141, 264
XagI	CCTNNNNNAGG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.