AT3G48750
ERF Family

belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003086
Physical Location & Seq
Forward (+)
18071454 .. 18074641
3188 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48750.1

Sequence Viewer

Length: 885 bp
ATGGATCAGTACGAGAAAGTTGAGAAGATTGGTGAAGGAACTTACGGTGTGGTTTATAAGGCACGTGACAAAGTGACTAATGAGACAATTGCTTTGAAGAAGATCAGGCTAGAGCAGGAGGATGAAGGTGTTCCTAGCACAGCAATCAGAGAAATCTCCCTCTTGAAAGAAATGCAGCACAGCAACATTGTCAAATTGCAGGATGTGGTGCACAGCGAGAAACGTTTGTATCTGGTTTTTGAGTATCTTGACTTGGATCTCAAAAAGCACATGGATTCTACTCCTGATTTCTCCAAGGATCTACATATGATCAAAACATATCTTTACCAGATTCTCCGTGGAATTGCGTATTGCCACTCTCATAGGGTTCTCCATCGTGATCTGAAGCCACAGAATTTGTTGATTGATCGCCGCACAAACTCACTGAAGCTTGCTGATTTTGGACTGGCCAGAGCATTCGGTATCCCTGTCAGGACATTTACTCATGAGGTTGTTACTCTCTGGTACCGAGCACCAGAGATACTCCTAGGATCTCATCATTACTCTACACCTGTTGATATTTGGTCTGTGGGGTGCATATTTGCTGAGATGATCAGCCAAAAGCCCTTATTTCCTGGAGACTCCGAGATTGATCAACTCTTCAAGATTTTCAGAATCATGGGAACTCCGTACGAGGATACATGGCGTGGGGTAACTTCTCTACCGGATTATAAATCTGCTTTCCCTAAATGGAAACCAACGGACCTAGAAACTTTTGTCCCCAATCTAGATCCCGATGGAGTCGATCTCCTTTCTAAAATGCTGTTAATGGATCCGACCAAAAGAATCAACGCAAGAGCCGCCCTGGAGCATGAATACTTCAAGGATCTTGGAGGCATGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005938 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0008356 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009555 GO:0009574 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010005 GO:0010154 GO:0010235 GO:0010374 GO:0010440 GO:0010444 GO:0010468 GO:0010564 GO:0015630 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0022414 GO:0030154 GO:0030863 GO:0030981 GO:0032501 GO:0032502 GO:0032506 GO:0033043 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0040020 GO:0042023 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0046483 GO:0048229 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051276 GO:0051301 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0055028 GO:0060255 GO:0061458 GO:0061640 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0072686 GO:0090304 GO:0090558 GO:0090627 GO:0097472 GO:0098725 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901987 GO:1902410 GO:1902806 GO:1903047 GO:2000241
KEGG Pathways
Metabolic & Signaling
ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226
Pfam Domains
Protein Families
Pkinase

Protein Analysis

294

Amino Acids

34.03

Weight (kDa)

6.42

Isoelectric Point (pI)

24.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 287 9.6e-78 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 6 - 200 1e-32 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 57, 711
Acc65I GGTACC 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 504
AciI CCGC 2 cut(s) 412, 840
AclI AACGTT 1 cut(s) 223
AclWI GGATC 8 cut(s) 12, 264, 306, 538, 764, 806, 819, 873
AcoI YGGCCR 1 cut(s) 447
AcsI RAATTY 1 cut(s) 394
AcuI CTGAAG 2 cut(s) 404, 446
AcvI CACGTG 1 cut(s) 65
AfaI GTAC 3 cut(s) 11, 506, 671
AgsI TTSAA 4 cut(s) 97, 166, 643, 862
AjnI CCWGG 2 cut(s) 613, 843
AluBI AGCT 1 cut(s) 430
AluI AGCT 1 cut(s) 430
Alw21I GWGCWC 2 cut(s) 213, 514
Alw26I GTCTC 2 cut(s) 77, 612
Alw44I GTGCAC 1 cut(s) 209
AlwI GGATC 8 cut(s) 12, 264, 306, 538, 764, 806, 819, 873
AoxI GGCC 1 cut(s) 447
ApaLI GTGCAC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 394
ArsI GACNNNNNNTTYG 2 cut(s) 76, 108
Asp700I GAANNNNTTC 1 cut(s) 129
Asp718I GGTACC 1 cut(s) 504
AspA2I CCTAGG 1 cut(s) 526
AspS9I GGNCC 1 cut(s) 742
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 742
AvrII CCTAGG 1 cut(s) 526
BaeGI GKGCMC 1 cut(s) 213
BaeI ACNNNNGTAYC 2 cut(s) 212, 245
BalI TGGCCA 1 cut(s) 449
BamHI GGATCC 1 cut(s) 811
BanI GGYRCC 1 cut(s) 504
BbrPI CACGTG 1 cut(s) 65
Bbv12I GWGCWC 2 cut(s) 213, 514
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 381, 770
BciT130I CCWGG 2 cut(s) 615, 845
BciVI GTATCC 2 cut(s) 473, 670
BclI TGATCA 3 cut(s) 309, 591, 631
BcoDI GTCTC 2 cut(s) 77, 612
BfaI CTAG 5 cut(s) 110, 135, 527, 746, 767
BfuI GTATCC 2 cut(s) 473, 670
BisI GCNGC 3 cut(s) 176, 412, 840
BlnI CCTAGG 1 cut(s) 526
BlsI GCNGC 3 cut(s) 177, 413, 841
Bme1390I CCNGG 2 cut(s) 615, 845
Bme18I GGWCC 1 cut(s) 742
BmgT120I GGNCC 1 cut(s) 742
BmiI GGNNCC 2 cut(s) 506, 813
BmrFI CCNGG 2 cut(s) 615, 845
BplI GAGNNNNNCTC 2 cut(s) 771, 803
BpmI CTGGAG 2 cut(s) 636, 866
BsaAI YACGTR 1 cut(s) 65
BsaJI CCNNGG 4 cut(s) 294, 337, 526, 843
BsaWI WCCGGW 1 cut(s) 703
Bse1I ACTGG 1 cut(s) 450
BseBI CCWGG 2 cut(s) 615, 845
BseDI CCNNGG 4 cut(s) 294, 337, 526, 843
BseGI GGATG 2 cut(s) 127, 208
BseMII CTCAG 1 cut(s) 576
BseNI ACTGG 1 cut(s) 450
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 1 cut(s) 449
BshNI GGYRCC 1 cut(s) 504
BsiHKAI GWGCWC 2 cut(s) 213, 514
BsiSI CCGG 1 cut(s) 704
BsiWI CGTACG 1 cut(s) 669
BslFI GGGAC 1 cut(s) 743
BsmAI GTCTC 2 cut(s) 77, 612
BsmFI GGGAC 1 cut(s) 743
BsmI GAATGC 1 cut(s) 455
BsnI GGCC 1 cut(s) 449
Bsp1286I GDGCHC 2 cut(s) 213, 514
BspACI CCGC 2 cut(s) 412, 840
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 1 cut(s) 577
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 2 cut(s) 506, 813
BspPI GGATC 8 cut(s) 12, 264, 306, 538, 764, 806, 819, 873
BspT107I GGYRCC 1 cut(s) 504
BsrI ACTGG 1 cut(s) 450
BssECI CCNNGG 4 cut(s) 294, 337, 526, 843
BssT1I CCWWGG 2 cut(s) 294, 526
Bst2UI CCWGG 2 cut(s) 615, 845
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 644
BstBAI YACGTR 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 432, 878
BstDEI CTNAG 2 cut(s) 585, 882
BstDSI CCRYGG 1 cut(s) 337
BstF5I GGATG 2 cut(s) 127, 208
BstMAI GTCTC 2 cut(s) 77, 612
BstMWI GCNNNNNNNGC 1 cut(s) 839
BstNI CCWGG 2 cut(s) 615, 845
BstNSI RCATGY 1 cut(s) 880
BstSCI CCNGG 2 cut(s) 613, 843
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 6 cut(s) 256, 298, 530, 769, 811, 865
BstYI RGATCY 6 cut(s) 256, 298, 530, 769, 811, 865
BsuI GTATCC 2 cut(s) 473, 670
BsuRI GGCC 1 cut(s) 449
BtgI CCRYGG 1 cut(s) 337
BtsCI GGATG 2 cut(s) 127, 208
BtsIMutI CAGTG 1 cut(s) 422
Cac8I GCNNGC 2 cut(s) 432, 878
CciI TCATGA 1 cut(s) 484
Cfr13I GGNCC 1 cut(s) 742
Csp6I GTAC 3 cut(s) 10, 505, 670
CspCI CAANNNNNGTGG 2 cut(s) 378, 413
CviAII CATG 6 cut(s) 271, 485, 658, 681, 851, 877
CviJI RGCY 7 cut(s) 109, 388, 430, 449, 597, 604, 839
CviKI_1 RGCY 7 cut(s) 109, 388, 430, 449, 597, 604, 839
CviQI GTAC 3 cut(s) 10, 505, 670
DdeI CTNAG 2 cut(s) 585, 882
EaeI YGGCCR 1 cut(s) 447
Eam1104I CTCTTC 1 cut(s) 644
EarI CTCTTC 1 cut(s) 644
Eco130I CCWWGG 2 cut(s) 294, 526
Eco47I GGWCC 1 cut(s) 742
Eco57I CTGAAG 2 cut(s) 404, 446
Eco72I CACGTG 1 cut(s) 65
EcoRII CCWGG 2 cut(s) 613, 843
EcoT14I CCWWGG 2 cut(s) 294, 526
ErhI CCWWGG 2 cut(s) 294, 526
FaeI CATG 6 cut(s) 274, 488, 661, 684, 854, 880
FaqI GGGAC 1 cut(s) 743
FatI CATG 6 cut(s) 270, 484, 657, 680, 850, 876
FauNDI CATATG 1 cut(s) 306
FbaI TGATCA 3 cut(s) 309, 591, 631
Fnu4HI GCNGC 3 cut(s) 176, 412, 840
FokI GGATG 2 cut(s) 134, 215
Fsp4HI GCNGC 3 cut(s) 176, 412, 840
FspBI CTAG 5 cut(s) 110, 135, 527, 746, 767
GluI GCNGC 3 cut(s) 176, 412, 840
GsuI CTGGAG 2 cut(s) 636, 866
HaeIII GGCC 1 cut(s) 449
HapII CCGG 1 cut(s) 704
Hin1II CATG 6 cut(s) 274, 488, 661, 684, 854, 880
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 6 cut(s) 275, 331, 620, 654, 780, 825
HpaII CCGG 1 cut(s) 704
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 5 cut(s) 149, 384, 625, 653, 816
Hpy188III TCNNGA 9 cut(s) 163, 248, 284, 377, 472, 485, 643, 767, 773
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 2 cut(s) 29, 119
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 2 cut(s) 64, 223
HpyCH4V TGCA 4 cut(s) 175, 199, 211, 576
HpyF10VI GCNNNNNNNGC 1 cut(s) 839
HpyF3I CTNAG 2 cut(s) 585, 882
HpySE526I ACGT 2 cut(s) 64, 223
Hsp92II CATG 6 cut(s) 274, 488, 661, 684, 854, 880
KpnI GGTACC 1 cut(s) 508
Ksp22I TGATCA 3 cut(s) 309, 591, 631
LmnI GCTCC 1 cut(s) 847
Lsp1109I GCAGC 1 cut(s) 187
MaeI CTAG 5 cut(s) 110, 135, 527, 746, 767
MaeII ACGT 2 cut(s) 64, 223
MaeIII GTNAC 4 cut(s) 65, 73, 493, 691
MboII GAAGA 4 cut(s) 37, 109, 112, 631
MfeI CAATTG 1 cut(s) 87
MflI RGATCY 6 cut(s) 256, 298, 530, 769, 811, 865
MhlI GDGCHC 2 cut(s) 213, 514
MlsI TGGCCA 1 cut(s) 449
MluCI AATT 4 cut(s) 87, 194, 342, 394
MluNI TGGCCA 1 cut(s) 449
MlyI GAGTC 2 cut(s) 614, 789
MmeI TCCRAC 1 cut(s) 839
MnlI CCTC 5 cut(s) 112, 170, 481, 667, 866
Mox20I TGGCCA 1 cut(s) 449
MroXI GAANNNNTTC 1 cut(s) 129
MscI TGGCCA 1 cut(s) 449
MseI TTAA 1 cut(s) 806
Msp20I TGGCCA 1 cut(s) 449
MspI CCGG 1 cut(s) 704
MspR9I CCNGG 2 cut(s) 615, 845
MunI CAATTG 1 cut(s) 87
Mva1269I GAATGC 1 cut(s) 455
MvaI CCWGG 2 cut(s) 615, 845
MwoI GCNNNNNNNGC 1 cut(s) 839
NdeI CATATG 1 cut(s) 306
NlaIII CATG 6 cut(s) 274, 488, 661, 684, 854, 880
NlaIV GGNNCC 2 cut(s) 506, 813
NmuCI GTSAC 2 cut(s) 65, 73
NspI RCATGY 1 cut(s) 880
PaeI GCATGC 1 cut(s) 880
PagI TCATGA 1 cut(s) 484
PctI GAATGC 1 cut(s) 455
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 4 cut(s) 275, 331, 654, 825
Pfl23II CGTACG 1 cut(s) 669
PfoI TCCNGGA 1 cut(s) 613
PkrI GCNGC 3 cut(s) 177, 413, 841
PleI GAGTC 2 cut(s) 614, 788
PmaCI CACGTG 1 cut(s) 65
PmlI CACGTG 1 cut(s) 65
PpsI GAGTC 2 cut(s) 614, 788
Ppu21I YACGTR 1 cut(s) 65
PsiI TTATAA 2 cut(s) 57, 711
Psp1406I AACGTT 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 613, 843
PspCI CACGTG 1 cut(s) 65
PspGI CCWGG 2 cut(s) 613, 843
PspLI CGTACG 1 cut(s) 669
PspN4I GGNNCC 2 cut(s) 506, 813
PspPI GGNCC 1 cut(s) 742
PsuI RGATCY 6 cut(s) 256, 298, 530, 769, 811, 865
RsaI GTAC 3 cut(s) 11, 506, 671
RsaNI GTAC 3 cut(s) 10, 505, 670
SaqAI TTAA 1 cut(s) 806
SatI GCNGC 3 cut(s) 176, 412, 840
Sau96I GGNCC 1 cut(s) 742
SchI GAGTC 2 cut(s) 614, 789
ScrFI CCNGG 2 cut(s) 615, 845
SduI GDGCHC 2 cut(s) 213, 514
SetI ASST 7 cut(s) 67, 130, 226, 432, 492, 553, 747
SinI GGWCC 1 cut(s) 742
SphI GCATGC 1 cut(s) 880
Sse9I AATT 4 cut(s) 87, 194, 342, 394
SsiI CCGC 2 cut(s) 412, 840
SspMI CTAG 5 cut(s) 110, 135, 527, 746, 767
StyD4I CCNGG 2 cut(s) 613, 843
StyI CCWWGG 2 cut(s) 294, 526
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 2 cut(s) 67, 226
TaqI TCGA 1 cut(s) 783
TasI AATT 4 cut(s) 87, 194, 342, 394
TauI GCSGC 2 cut(s) 414, 842
TfiI GAWTC 4 cut(s) 275, 331, 654, 825
Tru1I TTAA 1 cut(s) 806
Tru9I TTAA 1 cut(s) 806
TscAI CASTG 1 cut(s) 429
TseFI GTSAC 2 cut(s) 65, 73
TseI GCWGC 1 cut(s) 175
Tsp45I GTSAC 2 cut(s) 65, 73
TspDTI ATGAA 2 cut(s) 138, 867
TspGWI ACGGA 3 cut(s) 326, 657, 755
TspRI CASTG 1 cut(s) 429
VneI GTGCAC 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 742
XapI RAATTY 1 cut(s) 394
XbaI TCTAGA 1 cut(s) 766
XceI RCATGY 1 cut(s) 880
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
XmaJI CCTAGG 1 cut(s) 526
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 5 cut(s) 110, 135, 527, 746, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.