Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003086

Physical Location & Seq

Genomic Coordinates Forward (+)

24477407 .. 24480948

Gene Structure 3542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG129500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGACAAGTACGAGAAAGTAGAGAAGATTGGGGAAGGAACTTACGGCGTGGTTTACAAGGCTCGTGATCGTCTCACCAATGAAACCATAGCTTTGAAGAAGATTCGGTTGGAGCAGGAAGATGAGGGCGTCCCAAGCACTGCCATCAGAGAAATTTCTCTCTTGAAAGAAATGCAGCATGCCAACATTGTCAGGTTACAGGATGTTGTGCATAGTGAGAAGCGCTTGTATCTGGTGTTTGAGTACCTGGACTTGGATTTGAAGAAGTATATGGATTCTTCTCCTGAATTTGCAAAGGATCCTCGCCAGATAAAAATGTTCCTTTATCAGATTCTCAGAGGCATTGCTTATTGTCATTCACATAGAGTTCTTCATCGAGATCTGAAGCCCCAGAATCTACTGATAGATCGTCGCACCAATGCACTAAAGCTTGCAGATTTTGGACTGGCCCGAGCGTTTGGTATTCCTGTTAGGACATATACTCATGAGGTGGTGACTCTCTGGTACAGAGCACCGGAAATTTTGCTCGGATCTGGCCATTATTCGACTCCAGTTGATGTGTGGTCAGTGGGTTGTATATTTGCTGAGATGTTAAACCAACGACCTTTATTTCCAGGCGATTCTGAGATTGATGAATTGTTCAAGATATTTAGAATCTTGGGTACTCCAAATGAAGATACATGGCCTGGAGTGACTTCTTTGCCTGATTTTAAATCTTCCTTTCCTAAGTGGCTTTCTAAGGACTTGGCAACTTTAGTTCCAAATCTTGAATCAGCTGGTGTTGACATTCTTTCTAAAATGCTCTGCTTGGATCCGAGCAAAAGGATTACGGCAAGGGGTGCTCTTGAGCATGAATACTTCAAAGATATTCCATTTGTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072686 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

294

Amino Acids

33.84

Weight (kDa)

6.72

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 287	4.2e-79	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 199	9.8e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48750
fragaria_vesca	FvH4_1g27840 FvH4_1g27840 FvH4_1g27840
malus_domestica	MD02G1248900.v1.1 MD07G1067400.v1.1
prunus_persica	Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1
pyrus_communis	pycom02g21320
rosa_chinensis	RchiOBHm_Chr1g0333011 RchiOBHm_Chr1g0333051 RchiOBHm_Chr3g0489001
rosa_laevigata	RLG00000022900 RLG00000029629
rosa_multiflora	Rmu_co8022684.1_g000001 Rmu_sc0000117.1_g000041 Rmu_sc0000117.1_g000055 Rmu_sc0003088.1_g000001 Rmu_sc0021925.1_g000005
rosa_roxburghii	Rroxscaffold_4G00317830 Rroxscaffold_6G00393760
rosa_rugosa	Rorug01G0106600 Rorug03G0242500 Rorug03G0242500
rosa_samantha	Rh1AG129500 Rh1BG099000 Rh1CG123400 Rh1DG135300 Rh1DG135500 Rh3AG290900 Rh3BG327600 Rh3CG324900 Rh3DG323900
rosa_wichuraiana	Rw1G010280 Rw1G010330 Rw3G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	293, 306, 538, 806, 819
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	3 cut(s)	153, 287, 519
AcuI	CTGAAG	1 cut(s)	404
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	4 cut(s)	11, 245, 506, 664
AfeI	AGCGCT	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	6 cut(s)	97, 166, 262, 643, 770, 862
AjnI	CCWGG	3 cut(s)	246, 613, 685
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	3 cut(s)	92, 430, 776
AluI	AGCT	3 cut(s)	92, 430, 776
Alw21I	GWGCWC	2 cut(s)	514, 844
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	5 cut(s)	293, 306, 538, 806, 819
Ama87I	CYCGRG	1 cut(s)	450
Aor51HI	AGCGCT	1 cut(s)	224
AoxI	GGCC	3 cut(s)	447, 535, 683
ApeKI	GCWGC	1 cut(s)	175
ApoI	RAATTY	3 cut(s)	153, 287, 519
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	2 cut(s)	67, 505
AvaI	CYCGRG	1 cut(s)	450
BalI	TGGCCA	1 cut(s)	537
BamHI	GGATCC	2 cut(s)	298, 811
BauI	CACGAG	1 cut(s)	63
Bbv12I	GWGCWC	2 cut(s)	514, 844
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	2 cut(s)	61, 846
BciT130I	CCWGG	3 cut(s)	248, 615, 687
BcoDI	GTCTC	1 cut(s)	77
BfoI	RGCGCY	1 cut(s)	226
BglII	AGATCT	1 cut(s)	379
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
Bme1390I	CCNGG	3 cut(s)	248, 615, 687
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	2 cut(s)	300, 813
BmrFI	CCNGG	3 cut(s)	248, 615, 687
BpmI	CTGGAG	2 cut(s)	534, 708
BpuEI	CTTGAG	1 cut(s)	866
BsaHI	GRCGYC	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	514
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	2 cut(s)	450, 551
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	3 cut(s)	248, 615, 687
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	3 cut(s)	349, 576, 615
BseNI	ACTGG	2 cut(s)	450, 551
BseXI	GCAGC	1 cut(s)	187
BshFI	GGCC	3 cut(s)	449, 537, 685
BsiHKAI	GWGCWC	2 cut(s)	514, 844
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	515
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	77
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	3 cut(s)	449, 537, 685
BsoBI	CYCGRG	1 cut(s)	450
Bsp1286I	GDGCHC	2 cut(s)	514, 844
Bsp143I	GATC	6 cut(s)	67, 298, 379, 406, 530, 811
BspANI	GGCC	3 cut(s)	449, 537, 685
BspCNI	CTCAG	3 cut(s)	348, 577, 616
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	2 cut(s)	300, 813
BspPI	GGATC	5 cut(s)	293, 306, 538, 806, 819
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	450, 551
BssMI	GATC	6 cut(s)	67, 298, 379, 406, 530, 811
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
Bst2UI	CCWGG	3 cut(s)	248, 615, 687
BstACI	GRCGYC	1 cut(s)	129
BstAPI	GCANNNNNTGC	1 cut(s)	839
BstC8I	GCNNGC	2 cut(s)	180, 432
BstDEI	CTNAG	5 cut(s)	335, 585, 624, 726, 738
BstF5I	GGATG	1 cut(s)	208
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	6 cut(s)	70, 301, 382, 409, 533, 814
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	6 cut(s)	67, 298, 379, 406, 530, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 839
BstNI	CCWGG	3 cut(s)	248, 615, 687
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	3 cut(s)	246, 613, 685
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	4 cut(s)	298, 379, 530, 811
BstYI	RGATCY	4 cut(s)	298, 379, 530, 811
BsuRI	GGCC	3 cut(s)	449, 537, 685
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	138, 573
Cac8I	GCNNGC	2 cut(s)	180, 432
CciI	TCATGA	1 cut(s)	484
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	448
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	4 cut(s)	10, 244, 505, 663
CviAII	CATG	4 cut(s)	179, 485, 681, 851
CviJI	RGCY	9 cut(s)	62, 92, 388, 430, 449, 537, 685, 733, 776
CviKI_1	RGCY	9 cut(s)	62, 92, 388, 430, 449, 537, 685, 733, 776
CviQI	GTAC	4 cut(s)	10, 244, 505, 663
DdeI	CTNAG	5 cut(s)	335, 585, 624, 726, 738
DpnI	GATC	6 cut(s)	69, 300, 381, 408, 532, 813
DpnII	GATC	6 cut(s)	67, 298, 379, 406, 530, 811
DraI	TTTAAA	1 cut(s)	712
EaeI	YGGCCR	1 cut(s)	535
Eco47III	AGCGCT	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	404
Eco88I	CYCGRG	1 cut(s)	450
EcoRII	CCWGG	3 cut(s)	246, 613, 685
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	4 cut(s)	182, 488, 684, 854
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	4 cut(s)	178, 484, 680, 850
Fnu4HI	GCNGC	1 cut(s)	176
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	176
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	1 cut(s)	176
GsuI	CTGGAG	2 cut(s)	534, 708
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	3 cut(s)	449, 537, 685
HapII	CCGG	1 cut(s)	515
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	1 cut(s)	225
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	4 cut(s)	182, 488, 684, 854
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	9 cut(s)	103, 275, 331, 394, 496, 547, 620, 654, 770
HpaII	CCGG	1 cut(s)	515
HphI	GGTGA	2 cut(s)	67, 505
Hpy166II	GTNNAC	2 cut(s)	55, 784
Hpy188I	TCNGA	7 cut(s)	149, 330, 338, 384, 530, 625, 816
Hpy188III	TCNNGA	8 cut(s)	65, 163, 284, 377, 485, 643, 767, 845
Hpy8I	GTNNAC	2 cut(s)	55, 784
Hpy99I	CGWCG	1 cut(s)	414
HpyAV	CCTTC	1 cut(s)	29
HpyCH4V	TGCA	5 cut(s)	175, 211, 293, 422, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 839
HpyF3I	CTNAG	5 cut(s)	335, 585, 624, 726, 738
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	4 cut(s)	182, 488, 684, 854
HspAI	GCGC	1 cut(s)	223
Kzo9I	GATC	6 cut(s)	67, 298, 379, 406, 530, 811
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	1 cut(s)	187
MaeIII	GTNAC	3 cut(s)	195, 493, 691
MalI	GATC	6 cut(s)	69, 300, 381, 408, 532, 813
MboI	GATC	6 cut(s)	67, 298, 379, 406, 530, 811
MboII	GAAGA	9 cut(s)	37, 109, 112, 131, 270, 274, 362, 686, 708
MflI	RGATCY	4 cut(s)	298, 379, 530, 811
MhlI	GDGCHC	2 cut(s)	514, 844
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	4 cut(s)	153, 287, 519, 635
MluNI	TGGCCA	1 cut(s)	537
MlyI	GAGTC	2 cut(s)	490, 541
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	4 cut(s)	118, 312, 332, 481
Mox20I	TGGCCA	1 cut(s)	537
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	2 cut(s)	593, 711
Msp20I	TGGCCA	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	1 cut(s)	515
MspR9I	CCNGG	3 cut(s)	248, 615, 687
MvaI	CCWGG	3 cut(s)	248, 615, 687
MwoI	GCNNNNNNNGC	2 cut(s)	135, 839
NdeII	GATC	6 cut(s)	67, 298, 379, 406, 530, 811
NlaIII	CATG	4 cut(s)	182, 488, 684, 854
NlaIV	GGNNCC	2 cut(s)	300, 813
NmuCI	GTSAC	2 cut(s)	493, 691
NspI	RCATGY	1 cut(s)	182
PaeI	GCATGC	1 cut(s)	182
PagI	TCATGA	1 cut(s)	484
PfeI	GAWTC	7 cut(s)	103, 275, 331, 394, 620, 654, 770
PkrI	GCNGC	1 cut(s)	177
PleI	GAGTC	2 cut(s)	490, 541
PpsI	GAGTC	2 cut(s)	490, 541
Psp6I	CCWGG	3 cut(s)	246, 613, 685
PspGI	CCWGG	3 cut(s)	246, 613, 685
PspN4I	GGNNCC	2 cut(s)	300, 813
PspPI	GGNCC	1 cut(s)	448
PsuI	RGATCY	4 cut(s)	298, 379, 530, 811
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	4 cut(s)	11, 245, 506, 664
RsaNI	GTAC	4 cut(s)	10, 244, 505, 663
SaqAI	TTAA	2 cut(s)	593, 711
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	6 cut(s)	67, 298, 379, 406, 530, 811
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	2 cut(s)	490, 541
ScrFI	CCNGG	3 cut(s)	248, 615, 687
SduI	GDGCHC	2 cut(s)	514, 844
SetI	ASST	7 cut(s)	94, 197, 249, 432, 492, 607, 778
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	4 cut(s)	153, 287, 519, 635
StyD4I	CCNGG	3 cut(s)	246, 613, 685
TaqI	TCGA	2 cut(s)	376, 545
TasI	AATT	4 cut(s)	153, 287, 519, 635
TfiI	GAWTC	7 cut(s)	103, 275, 331, 394, 620, 654, 770
Tru1I	TTAA	2 cut(s)	593, 711
Tru9I	TTAA	2 cut(s)	593, 711
TscAI	CASTG	2 cut(s)	145, 573
TseFI	GTSAC	2 cut(s)	493, 691
TseI	GCWGC	1 cut(s)	175
Tsp45I	GTSAC	2 cut(s)	493, 691
TspDTI	ATGAA	5 cut(s)	96, 362, 648, 687, 867
TspRI	CASTG	2 cut(s)	145, 573
XapI	RAATTY	3 cut(s)	153, 287, 519
XceI	RCATGY	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.