Rh1DG135500
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
28432384 .. 28433754
1371 bp
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UTR
Exon/CDS
Intron
Rh1DG135500.1

Sequence Viewer

Length: 369 bp
ATGGACAAGTACGAGAAAGTAGAGAAGATTGGGGAAGGAACTTATGGCGTGGTTTACAAGGCTCGTGATCGTCTCACCAATGAAACCATAGCTTTGAAGAAGATTCGGTTGGAGCAGGAAGATGAGGGCGTCCCAAGCACTGCGAGTAGAGAAATTTCTCTCTTGAAAGAAATGCAGCATGCCAACATTGTCAGGTTACAGGATGTTGTGCATAGTGAGAAGCGCTTGTATCTGGTGTTTGAGTACCTGGACTTGGATTTGAAGAAGTATATGGATTCTTCTCCTGAATTTGCAAAGGATCCTCGCCAGATAAAAAAAATGCTCTGCTTGGATCCCGAGCAAAAGGATTATGGCAAGGGGTGCTCTTGA

Protein Analysis

122

Amino Acids

14.22

Weight (kDa)

6.16

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 105 1e-23 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 6 - 96 7.3e-13 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 293, 306, 326, 339
AcsI RAATTY 2 cut(s) 153, 287
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 2 cut(s) 11, 245
AfeI AGCGCT 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 3 cut(s) 97, 166, 262
AjnI CCWGG 1 cut(s) 246
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw21I GWGCWC 1 cut(s) 365
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 4 cut(s) 293, 306, 326, 339
Ama87I CYCGRG 1 cut(s) 335
Aor51HI AGCGCT 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 2 cut(s) 153, 287
AspLEI GCGC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 67
AvaI CYCGRG 1 cut(s) 335
BamHI GGATCC 2 cut(s) 298, 331
BauI CACGAG 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 365
BbvI GCAGC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 226
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bme1390I CCNGG 1 cut(s) 248
BmeT110I CYCGRG 1 cut(s) 335
BmiI GGNNCC 2 cut(s) 300, 333
BmrFI CCNGG 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 248
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 253
BseXI GCAGC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 365
BsiHKCI CYCGRG 1 cut(s) 335
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 335
Bsp1286I GDGCHC 1 cut(s) 365
Bsp143I GATC 3 cut(s) 67, 298, 331
BspLI GGNNCC 2 cut(s) 300, 333
BspPI GGATC 4 cut(s) 293, 306, 326, 339
BssMI GATC 3 cut(s) 67, 298, 331
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 248
BstACI GRCGYC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 360
BstC8I GCNNGC 1 cut(s) 180
BstF5I GGATG 1 cut(s) 208
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 3 cut(s) 70, 301, 334
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 3 cut(s) 67, 298, 331
BstMWI GCNNNNNNNGC 2 cut(s) 135, 360
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 2 cut(s) 298, 331
BstYI RGATCY 2 cut(s) 298, 331
BtsCI GGATG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 180
CfoI GCGC 1 cut(s) 225
CseI GACGC 1 cut(s) 118
Csp6I GTAC 2 cut(s) 10, 244
CviAII CATG 1 cut(s) 179
CviJI RGCY 2 cut(s) 62, 92
CviKI_1 RGCY 2 cut(s) 62, 92
CviQI GTAC 2 cut(s) 10, 244
DpnI GATC 3 cut(s) 69, 300, 333
DpnII GATC 3 cut(s) 67, 298, 331
Eco47III AGCGCT 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 1 cut(s) 182
FaiI YATR 7 cut(s) 45, 89, 180, 213, 270, 272, 351
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 176
GlaI GCGC 1 cut(s) 224
GluI GCNGC 1 cut(s) 176
HaeII RGCGCY 1 cut(s) 226
HgaI GACGC 1 cut(s) 118
HhaI GCGC 1 cut(s) 225
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 1 cut(s) 182
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HinfI GANTC 2 cut(s) 103, 275
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 55
Hpy188III TCNNGA 5 cut(s) 65, 163, 284, 335, 366
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 29
HpyCH4V TGCA 3 cut(s) 175, 211, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 360
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 1 cut(s) 182
HspAI GCGC 1 cut(s) 223
Kzo9I GATC 3 cut(s) 67, 298, 331
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 8 cut(s) 101, 178, 185, 218, 233, 260, 297, 320
Lsp1109I GCAGC 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 195
MalI GATC 3 cut(s) 69, 300, 333
MboI GATC 3 cut(s) 67, 298, 331
MboII GAAGA 6 cut(s) 37, 109, 112, 131, 270, 274
MflI RGATCY 2 cut(s) 298, 331
MhlI GDGCHC 1 cut(s) 365
MluCI AATT 2 cut(s) 153, 287
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 2 cut(s) 118, 312
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 135, 360
NdeII GATC 3 cut(s) 67, 298, 331
NlaIII CATG 1 cut(s) 182
NlaIV GGNNCC 2 cut(s) 300, 333
NspI RCATGY 1 cut(s) 182
PaeI GCATGC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 103, 275
PkrI GCNGC 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 300, 333
PsuI RGATCY 2 cut(s) 298, 331
RsaI GTAC 2 cut(s) 11, 245
RsaNI GTAC 2 cut(s) 10, 244
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 3 cut(s) 67, 298, 331
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 365
SetI ASST 3 cut(s) 94, 197, 249
SphI GCATGC 1 cut(s) 182
Sse9I AATT 2 cut(s) 153, 287
StyD4I CCNGG 1 cut(s) 246
TasI AATT 2 cut(s) 153, 287
TfiI GAWTC 2 cut(s) 103, 275
TscAI CASTG 1 cut(s) 145
TseI GCWGC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 96
TspRI CASTG 1 cut(s) 145
XapI RAATTY 2 cut(s) 153, 287
XceI RCATGY 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.