Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003086

Physical Location & Seq

Genomic Coordinates Forward (+)

28347884 .. 28351152

Gene Structure 3269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG135300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAATGCGGAGTCTTGCCTCCTTGGTAAGGGACGGATTCTTCGGGAGAATTTGAAGCCGGCCTACTCGATGGACAAGTACGAGAAAGTAGAGAAGATTGGGGAAGGAACTTACGGCGTGGTTTACAAGGCTCGTGATCGTCTCACCAATGAAACCATAGCTTTGAAGAAGATTCGGTTGGAGCAGGAAGATGAGGGCGTCCCAAGCACTGCCATCAGAGAAATTTCTCTCTTGAAAGAAATGCAGCATGCCAACATTGTCAGGTTACAGGATGTTGTGCATAGTGAGAAGCGCTTGTATCTGGTGTTTGAGTACCTGGACTTGGATTTGAAGAAGTATATGGATTCTTCTCCTGAATTTGCAAAGGATCCTCGCCAGATAAAAATGTTCCTTTATCAGATTCTCAGAGGCATTGCTTATTGTCATTCACATAGAGTTCTTCATCGAGATCTGAAGCCCCAGAATCTACTGATAGATCGTCGCACCAATGCACTAAAGCTTGCAGATTTTGGACTGGCCCGAGCGTTTGGTATTCCTGTTAGGACATATACTCATGAGGTGGTGACTCTCTGGTACAGAGCCCCAGAAATTTTGCTCGGATCTGGCCATTATTCGACTCCAGTTGATGTGTGGTCAGTGGGTTGTATATTTGCTGAGATGTTAAACCAACGACCTTTATTTCCAGGCGATTCTGAGATTGATGAATTGTTCAAGATATTTAGAATCTTGGGTACTCCAAATGAAGATACATGGCCTGGAGTGAATTCTTTGCCTGATTTTAAATCTTCCTTTCCTAAGTGGCTTTCTAAGGACTTGGCAACTTTAGTTCCAAATCTTGAATCAGCTGGTGTTGACATTCTTTCAAAAATGCTCTGCTTGGATCCGAGCAAAAGGATTACGGCAAGGGGTGCTCTTGAGCATGAATACTTCAAAGATATTCCATTTGTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072686 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

317

Amino Acids

36.4

Weight (kDa)

7.67

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	27 - 310	3.6e-79	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	29 - 222	1.2e-33	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48750
fragaria_vesca	FvH4_1g27840 FvH4_1g27840 FvH4_1g27840
malus_domestica	MD02G1248900.v1.1 MD07G1067400.v1.1
prunus_persica	Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1
pyrus_communis	pycom02g21320
rosa_chinensis	RchiOBHm_Chr1g0333011 RchiOBHm_Chr1g0333051 RchiOBHm_Chr3g0489001
rosa_laevigata	RLG00000022900 RLG00000029629
rosa_multiflora	Rmu_co8022684.1_g000001 Rmu_sc0000117.1_g000041 Rmu_sc0000117.1_g000055 Rmu_sc0003088.1_g000001 Rmu_sc0021925.1_g000005
rosa_roxburghii	Rroxscaffold_4G00317830 Rroxscaffold_6G00393760
rosa_rugosa	Rorug01G0106600 Rorug03G0242500 Rorug03G0242500
rosa_samantha	Rh1AG129500 Rh1BG099000 Rh1CG123400 Rh1DG135300 Rh1DG135500 Rh3AG290900 Rh3BG327600 Rh3CG324900 Rh3DG323900
rosa_wichuraiana	Rw1G010280 Rw1G010330 Rw3G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	5 cut(s)	362, 375, 607, 875, 888
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	5 cut(s)	49, 222, 356, 588, 763
AcuI	CTGAAG	1 cut(s)	473
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	4 cut(s)	80, 314, 575, 733
AfeI	AGCGCT	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	28, 322
AgsI	TTSAA	8 cut(s)	55, 166, 235, 331, 712, 839, 864, 931
AjnI	CCWGG	3 cut(s)	315, 682, 754
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	3 cut(s)	161, 499, 845
AluI	AGCT	3 cut(s)	161, 499, 845
Alw21I	GWGCWC	1 cut(s)	913
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	5 cut(s)	362, 375, 607, 875, 888
Ama87I	CYCGRG	1 cut(s)	519
Aor51HI	AGCGCT	1 cut(s)	293
AoxI	GGCC	4 cut(s)	60, 516, 604, 752
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	5 cut(s)	49, 222, 356, 588, 763
ArsI	GACNNNNNNTTYG	2 cut(s)	24, 56
AspLEI	GCGC	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	517
AsuHPI	GGTGA	2 cut(s)	136, 574
AvaI	CYCGRG	1 cut(s)	519
BalI	TGGCCA	1 cut(s)	606
BamHI	GGATCC	2 cut(s)	367, 880
BanII	GRGCYC	1 cut(s)	583
BarI	GAAGNNNNNNTAC	2 cut(s)	47, 79
BauI	CACGAG	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	913
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	2 cut(s)	64, 221
BceAI	ACGGC	2 cut(s)	130, 915
BciT130I	CCWGG	3 cut(s)	317, 684, 756
BcoDI	GTCTC	1 cut(s)	146
BfoI	RGCGCY	1 cut(s)	295
BglII	AGATCT	1 cut(s)	448
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
Bme1390I	CCNGG	3 cut(s)	317, 684, 756
BmeT110I	CYCGRG	1 cut(s)	519
BmgT120I	GGNCC	1 cut(s)	517
BmiI	GGNNCC	2 cut(s)	369, 882
BmrFI	CCNGG	3 cut(s)	317, 684, 756
BpmI	CTGGAG	2 cut(s)	603, 777
BpuEI	CTTGAG	1 cut(s)	935
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 322
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	2 cut(s)	519, 620
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	3 cut(s)	317, 684, 756
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	2 cut(s)	28, 322
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	3 cut(s)	418, 645, 684
BseNI	ACTGG	2 cut(s)	519, 620
BseXI	GCAGC	1 cut(s)	256
BshFI	GGCC	4 cut(s)	62, 518, 606, 754
BsiHKAI	GWGCWC	1 cut(s)	913
BsiHKCI	CYCGRG	1 cut(s)	519
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	2 cut(s)	45, 185
BslI	CCNNNNNNNGG	2 cut(s)	28, 322
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	2 cut(s)	45, 185
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	4 cut(s)	62, 518, 606, 754
BsoBI	CYCGRG	1 cut(s)	519
Bsp1286I	GDGCHC	2 cut(s)	583, 913
Bsp143I	GATC	6 cut(s)	136, 367, 448, 475, 599, 880
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	4 cut(s)	62, 518, 606, 754
BspCNI	CTCAG	3 cut(s)	417, 646, 685
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	2 cut(s)	369, 882
BspPI	GGATC	5 cut(s)	362, 375, 607, 875, 888
BsrDI	GCAATG	1 cut(s)	411
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	519, 620
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	6 cut(s)	136, 367, 448, 475, 599, 880
BssNI	GRCGYC	1 cut(s)	198
BssSI	CACGAG	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	22
Bst2BI	CACGAG	1 cut(s)	132
Bst2UI	CCWGG	3 cut(s)	317, 684, 756
BstACI	GRCGYC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	908
BstC8I	GCNNGC	3 cut(s)	60, 249, 501
BstDEI	CTNAG	5 cut(s)	404, 654, 693, 795, 807
BstENI	CCTNNNNNAGG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	277
BstH2I	RGCGCY	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	6 cut(s)	139, 370, 451, 478, 602, 883
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	6 cut(s)	136, 367, 448, 475, 599, 880
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 908
BstNI	CCWGG	3 cut(s)	317, 684, 756
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	3 cut(s)	315, 682, 754
BstV1I	GCAGC	1 cut(s)	256
BstX2I	RGATCY	4 cut(s)	367, 448, 599, 880
BstYI	RGATCY	4 cut(s)	367, 448, 599, 880
BsuRI	GGCC	4 cut(s)	62, 518, 606, 754
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	2 cut(s)	207, 642
Cac8I	GCNNGC	3 cut(s)	60, 249, 501
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	517
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	4 cut(s)	79, 313, 574, 732
CviAII	CATG	4 cut(s)	248, 554, 750, 920
CviQI	GTAC	4 cut(s)	79, 313, 574, 732
DdeI	CTNAG	5 cut(s)	404, 654, 693, 795, 807
DpnI	GATC	6 cut(s)	138, 369, 450, 477, 601, 882
DpnII	GATC	6 cut(s)	136, 367, 448, 475, 599, 880
DraI	TTTAAA	1 cut(s)	781
EaeI	YGGCCR	1 cut(s)	604
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	583
Eco47III	AGCGCT	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	473
Eco88I	CYCGRG	1 cut(s)	519
EcoNI	CCTNNNNNAGG	1 cut(s)	26
EcoRI	GAATTC	1 cut(s)	763
EcoRII	CCWGG	3 cut(s)	315, 682, 754
EcoT14I	CCWWGG	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	4 cut(s)	251, 557, 753, 923
FaqI	GGGAC	2 cut(s)	45, 185
FatI	CATG	4 cut(s)	247, 553, 749, 919
Fnu4HI	GCNGC	1 cut(s)	245
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	1 cut(s)	245
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	1 cut(s)	245
GsuI	CTGGAG	2 cut(s)	603, 777
HaeII	RGCGCY	1 cut(s)	295
HaeIII	GGCC	4 cut(s)	62, 518, 606, 754
HapII	CCGG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	294
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	4 cut(s)	251, 557, 753, 923
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HindIII	AAGCTT	1 cut(s)	497
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	2 cut(s)	136, 574
Hpy166II	GTNNAC	2 cut(s)	124, 853
Hpy188I	TCNGA	7 cut(s)	218, 399, 407, 453, 599, 694, 885
Hpy188III	TCNNGA	9 cut(s)	44, 134, 232, 353, 446, 554, 712, 836, 914
Hpy8I	GTNNAC	2 cut(s)	124, 853
Hpy99I	CGWCG	1 cut(s)	483
HpyAV	CCTTC	1 cut(s)	98
HpyCH4V	TGCA	5 cut(s)	244, 280, 362, 491, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 908
HpyF3I	CTNAG	5 cut(s)	404, 654, 693, 795, 807
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	251, 557, 753, 923
HspAI	GCGC	1 cut(s)	292
KroI	GCCGGC	1 cut(s)	58
KroNI	GCCGGC	1 cut(s)	60
Kzo9I	GATC	6 cut(s)	136, 367, 448, 475, 599, 880
LmnI	GCTCC	1 cut(s)	181
Lsp1109I	GCAGC	1 cut(s)	256
MaeIII	GTNAC	2 cut(s)	264, 562
MalI	GATC	6 cut(s)	138, 369, 450, 477, 601, 882
MboI	GATC	6 cut(s)	136, 367, 448, 475, 599, 880
MflI	RGATCY	4 cut(s)	367, 448, 599, 880
MhlI	GDGCHC	2 cut(s)	583, 913
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	6 cut(s)	49, 222, 356, 588, 704, 763
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	3 cut(s)	20, 559, 610
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	5 cut(s)	29, 187, 381, 401, 550
Mox20I	TGGCCA	1 cut(s)	606
MroNI	GCCGGC	1 cut(s)	58
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	2 cut(s)	662, 780
Msp20I	TGGCCA	1 cut(s)	606
MspA1I	CMGCKG	1 cut(s)	845
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	3 cut(s)	317, 684, 756
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	3 cut(s)	317, 684, 756
MwoI	GCNNNNNNNGC	2 cut(s)	204, 908
NaeI	GCCGGC	1 cut(s)	60
NdeII	GATC	6 cut(s)	136, 367, 448, 475, 599, 880
NgoMIV	GCCGGC	1 cut(s)	58
NlaIII	CATG	4 cut(s)	251, 557, 753, 923
NlaIV	GGNNCC	2 cut(s)	369, 882
NmuCI	GTSAC	1 cut(s)	562
NspI	RCATGY	1 cut(s)	251
PaeI	GCATGC	1 cut(s)	251
PagI	TCATGA	1 cut(s)	553
PctI	GAATGC	1 cut(s)	10
PdiI	GCCGGC	1 cut(s)	60
PfeI	GAWTC	8 cut(s)	37, 172, 344, 400, 463, 689, 723, 839
PkrI	GCNGC	1 cut(s)	246
PleI	GAGTC	3 cut(s)	19, 559, 610
PpsI	GAGTC	3 cut(s)	19, 559, 610
Psp6I	CCWGG	3 cut(s)	315, 682, 754
PspGI	CCWGG	3 cut(s)	315, 682, 754
PspN4I	GGNNCC	2 cut(s)	369, 882
PspPI	GGNCC	1 cut(s)	517
PsuI	RGATCY	4 cut(s)	367, 448, 599, 880
PvuII	CAGCTG	1 cut(s)	845
RsaI	GTAC	4 cut(s)	80, 314, 575, 733
RsaNI	GTAC	4 cut(s)	79, 313, 574, 732
SaqAI	TTAA	2 cut(s)	662, 780
SatI	GCNGC	1 cut(s)	245
Sau3AI	GATC	6 cut(s)	136, 367, 448, 475, 599, 880
Sau96I	GGNCC	1 cut(s)	517
SchI	GAGTC	3 cut(s)	20, 559, 610
ScrFI	CCNGG	3 cut(s)	317, 684, 756
SduI	GDGCHC	2 cut(s)	583, 913
SetI	ASST	7 cut(s)	163, 266, 318, 501, 561, 676, 847
SmlI	CTYRAG	1 cut(s)	914
SmoI	CTYRAG	1 cut(s)	914
SphI	GCATGC	1 cut(s)	251
Sse9I	AATT	6 cut(s)	49, 222, 356, 588, 704, 763
SsiI	CCGC	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	315, 682, 754
StyI	CCWWGG	1 cut(s)	22
TaqI	TCGA	3 cut(s)	68, 445, 614
TasI	AATT	6 cut(s)	49, 222, 356, 588, 704, 763
TfiI	GAWTC	8 cut(s)	37, 172, 344, 400, 463, 689, 723, 839
Tru1I	TTAA	2 cut(s)	662, 780
Tru9I	TTAA	2 cut(s)	662, 780
TscAI	CASTG	2 cut(s)	214, 642
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	6 cut(s)	17, 165, 431, 717, 756, 936
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	2 cut(s)	214, 642
XagI	CCTNNNNNAGG	1 cut(s)	26
XapI	RAATTY	5 cut(s)	49, 222, 356, 588, 763
XceI	RCATGY	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.