Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003086

Physical Location & Seq

Genomic Coordinates Forward (+)

19416665 .. 19420566

Gene Structure 3902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGACCAGTACGAGAAAGTAGAGAAGATTGGGGAAGGGACTTACGGAGTGGTGTACAAGGCGCGTGATCGTGTCACGAATGAGACGATTGCTCTCAAGAAGATTCGGTTGGAGCAGGAGGATGAGGGAGTCCCTAGCACCGCCATTCGAGAGATTTCTCTCCTCAAAGAAATGCAGCATGGCAACATTGTCAGGTTACAGGATGTGGTGCACAGTGAGAAGCGCTTGTACCTGGTGTTTGAGTACCTTGACTTGGATTTGAAGAAACATATGGATTCCACTCCTGATTTTGCAAAGGATCCCCGCCAAATTAAATTGTTCCTGTATCAGATTCTCCGAGATTTCGGACTGGCCCGAGCATTTGGTATTCCTGTCAGGACATTTACTCATGAGGTGGTGACCCTCTGGTACAGAGCACCGGAGATATTGCTTGGATCCCGCCATTACTCTACACCAGTTGATGTGTGGTCGGTGGGTTGTATATTTGCTGAGATGATAAACCAACGGCCTTTATTTCCTGGGGATTCTGAGATTGATGAATTGTTCAAGATATTTAGAATCTTGGGTACTCCAAATGAGGATACGTGGCCTGGAGTGAGTAGTATGCCTGACTTTAAATCTTCCTTTCCTAAGTGGCCATCTAAGGACTTGGCAACTCTAGTTCCAAATCTTGAATCAGCTGGTGTCAATCTTCTTTGTAAAATGCTCTGCTTGGATCCCAGCAAAAGGATTACAGCCAGGAGTGCTCTTGAGCATGAATACTTCAAAGATATTCCATTTGTACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072686 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

263

Amino Acids

30.18

Weight (kDa)

5.92

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 113	4.8e-24	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 94	1.5e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	112 - 255	3e-28	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48750
fragaria_vesca	FvH4_1g27840 FvH4_1g27840 FvH4_1g27840
malus_domestica	MD02G1248900.v1.1 MD07G1067400.v1.1
prunus_persica	Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1
pyrus_communis	pycom02g21320
rosa_chinensis	RchiOBHm_Chr1g0333011 RchiOBHm_Chr1g0333051 RchiOBHm_Chr3g0489001
rosa_laevigata	RLG00000022900 RLG00000029629
rosa_multiflora	Rmu_co8022684.1_g000001 Rmu_sc0000117.1_g000041 Rmu_sc0000117.1_g000055 Rmu_sc0003088.1_g000001 Rmu_sc0021925.1_g000005
rosa_roxburghii	Rroxscaffold_4G00317830 Rroxscaffold_6G00393760
rosa_rugosa	Rorug01G0106600 Rorug03G0242500 Rorug03G0242500
rosa_samantha	Rh1AG129500 Rh1BG099000 Rh1CG123400 Rh1DG135300 Rh1DG135500 Rh3AG290900 Rh3BG327600 Rh3CG324900 Rh3DG323900
rosa_wichuraiana	Rw1G010280 Rw1G010330 Rw3G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	64
AciI	CCGC	3 cut(s)	141, 304, 439
AclWI	GGATC	6 cut(s)	293, 306, 429, 442, 710, 723
AcoI	YGGCCR	1 cut(s)	635
AfaI	GTAC	7 cut(s)	11, 56, 230, 245, 410, 568, 783
AfeI	AGCGCT	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	253, 726
AgsI	TTSAA	4 cut(s)	262, 547, 674, 766
AjnI	CCWGG	4 cut(s)	231, 517, 589, 737
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	1 cut(s)	680
AluI	AGCT	1 cut(s)	680
Alw21I	GWGCWC	3 cut(s)	213, 418, 748
Alw26I	GTCTC	1 cut(s)	77
Alw44I	GTGCAC	1 cut(s)	209
AlwI	GGATC	6 cut(s)	293, 306, 429, 442, 710, 723
Ama87I	CYCGRG	1 cut(s)	354
Aor51HI	AGCGCT	1 cut(s)	224
AoxI	GGCC	4 cut(s)	351, 506, 587, 635
ApaLI	GTGCAC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	175
AspLEI	GCGC	2 cut(s)	64, 225
AspS9I	GGNCC	2 cut(s)	4, 352
AsuHPI	GGTGA	1 cut(s)	409
AvaI	CYCGRG	1 cut(s)	354
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	213
BalI	TGGCCA	1 cut(s)	637
BamHI	GGATCC	3 cut(s)	298, 434, 715
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
Bbv12I	GWGCWC	3 cut(s)	213, 418, 748
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	646
BceAI	ACGGC	1 cut(s)	521
BciT130I	CCWGG	4 cut(s)	233, 519, 591, 739
BciVI	GTATCC	1 cut(s)	574
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	2 cut(s)	135, 659
BfoI	RGCGCY	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	574
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
Bme1390I	CCNGG	4 cut(s)	233, 519, 591, 739
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	354
BmgT120I	GGNCC	2 cut(s)	4, 352
BmiI	GGNNCC	3 cut(s)	300, 436, 717
BmrFI	CCNGG	4 cut(s)	233, 519, 591, 739
BpmI	CTGGAG	1 cut(s)	612
BpuEI	CTTGAG	2 cut(s)	80, 770
BsaAI	YACGTR	1 cut(s)	585
BsaJI	CCNNGG	1 cut(s)	518
BsaWI	WCCGGW	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 726
Bse1I	ACTGG	3 cut(s)	7, 354, 455
BseBI	CCWGG	4 cut(s)	233, 519, 591, 739
BseDI	CCNNGG	1 cut(s)	518
BseGI	GGATG	2 cut(s)	127, 208
BseLI	CCNNNNNNNGG	2 cut(s)	253, 726
BseMII	CTCAG	2 cut(s)	480, 519
BseNI	ACTGG	3 cut(s)	7, 354, 455
BseRI	GAGGAG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	187
BseYI	CCCAGC	1 cut(s)	719
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	4 cut(s)	353, 508, 589, 637
BsiHKAI	GWGCWC	3 cut(s)	213, 418, 748
BsiHKCI	CYCGRG	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	419
BslFI	GGGAC	2 cut(s)	52, 116
BslI	CCNNNNNNNGG	2 cut(s)	253, 726
BsmAI	GTCTC	1 cut(s)	77
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	2 cut(s)	52, 116
BsnI	GGCC	4 cut(s)	353, 508, 589, 637
BsoBI	CYCGRG	1 cut(s)	354
Bsp1286I	GDGCHC	3 cut(s)	213, 418, 748
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	4 cut(s)	67, 298, 434, 715
BspACI	CCGC	3 cut(s)	141, 304, 439
BspANI	GGCC	4 cut(s)	353, 508, 589, 637
BspCNI	CTCAG	2 cut(s)	481, 520
BspFNI	CGCG	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	3 cut(s)	300, 436, 717
BspPI	GGATC	6 cut(s)	293, 306, 429, 442, 710, 723
BsrGI	TGTACA	1 cut(s)	54
BsrI	ACTGG	3 cut(s)	7, 354, 455
BssECI	CCNNGG	1 cut(s)	518
BssMI	GATC	4 cut(s)	67, 298, 434, 715
Bst2UI	CCWGG	4 cut(s)	233, 519, 591, 739
Bst4CI	ACNGT	1 cut(s)	215
BstAUI	TGTACA	1 cut(s)	54
BstBAI	YACGTR	1 cut(s)	585
BstDEI	CTNAG	4 cut(s)	489, 528, 630, 642
BstEII	GGTNACC	1 cut(s)	397
BstF5I	GGATG	2 cut(s)	127, 208
BstFNI	CGCG	1 cut(s)	64
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	64, 225
BstKTI	GATC	4 cut(s)	70, 301, 437, 718
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	4 cut(s)	67, 298, 434, 715
BstMWI	GCNNNNNNNGC	1 cut(s)	743
BstNI	CCWGG	4 cut(s)	233, 519, 591, 739
BstPI	GGTNACC	1 cut(s)	397
BstSCI	CCNGG	4 cut(s)	231, 517, 589, 737
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	3 cut(s)	298, 434, 715
BstYI	RGATCY	3 cut(s)	298, 434, 715
BsuI	GTATCC	1 cut(s)	574
BsuRI	GGCC	4 cut(s)	353, 508, 589, 637
BtsCI	GGATG	2 cut(s)	127, 208
BtsIMutI	CAGTG	1 cut(s)	220
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	2 cut(s)	64, 225
Cfr13I	GGNCC	2 cut(s)	4, 352
CsiI	ACCWGGT	1 cut(s)	231
Csp6I	GTAC	7 cut(s)	10, 55, 229, 244, 409, 567, 782
CviAII	CATG	3 cut(s)	179, 389, 755
CviJI	RGCY	6 cut(s)	353, 508, 589, 637, 680, 737
CviKI_1	RGCY	6 cut(s)	353, 508, 589, 637, 680, 737
CviQI	GTAC	7 cut(s)	10, 55, 229, 244, 409, 567, 782
DdeI	CTNAG	4 cut(s)	489, 528, 630, 642
DpnI	GATC	4 cut(s)	69, 300, 436, 717
DpnII	GATC	4 cut(s)	67, 298, 434, 715
DraI	TTTAAA	1 cut(s)	616
EaeI	YGGCCR	1 cut(s)	635
Eco47I	GGWCC	1 cut(s)	4
Eco47III	AGCGCT	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	354
Eco91I	GGTNACC	1 cut(s)	397
EcoO65I	GGTNACC	1 cut(s)	397
EcoRII	CCWGG	4 cut(s)	231, 517, 589, 737
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	3 cut(s)	182, 392, 758
FaiI	YATR	7 cut(s)	180, 270, 272, 390, 482, 605, 756
FaqI	GGGAC	2 cut(s)	52, 116
FatI	CATG	3 cut(s)	178, 388, 754
FauI	CCCGC	2 cut(s)	311, 446
FauNDI	CATATG	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	176
FokI	GGATG	2 cut(s)	134, 215
Fsp4HI	GCNGC	1 cut(s)	176
FspBI	CTAG	2 cut(s)	135, 659
GlaI	GCGC	2 cut(s)	63, 224
GluI	GCNGC	1 cut(s)	176
GsaI	CCCAGC	1 cut(s)	723
GsuI	CTGGAG	1 cut(s)	612
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	4 cut(s)	353, 508, 589, 637
HapII	CCGG	1 cut(s)	419
HhaI	GCGC	2 cut(s)	64, 225
Hin1II	CATG	3 cut(s)	182, 392, 758
Hin6I	GCGC	2 cut(s)	62, 223
HinP1I	GCGC	2 cut(s)	62, 223
HinfI	GANTC	7 cut(s)	103, 129, 275, 331, 524, 558, 674
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	2 cut(s)	55, 211
Hpy188I	TCNGA	4 cut(s)	330, 338, 347, 529
Hpy188III	TCNNGA	9 cut(s)	76, 97, 149, 284, 376, 389, 547, 671, 749
Hpy8I	GTNNAC	2 cut(s)	55, 211
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	584
HpyCH4V	TGCA	3 cut(s)	175, 211, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	743
HpyF3I	CTNAG	4 cut(s)	489, 528, 630, 642
HpySE526I	ACGT	1 cut(s)	584
Hsp92II	CATG	3 cut(s)	182, 392, 758
HspAI	GCGC	2 cut(s)	62, 223
Kzo9I	GATC	4 cut(s)	67, 298, 434, 715
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	1 cut(s)	187
MabI	ACCWGGT	1 cut(s)	231
MaeI	CTAG	2 cut(s)	135, 659
MaeII	ACGT	1 cut(s)	584
MaeIII	GTNAC	3 cut(s)	73, 195, 397
MalI	GATC	4 cut(s)	69, 300, 436, 717
MboI	GATC	4 cut(s)	67, 298, 434, 715
MboII	GAAGA	5 cut(s)	37, 112, 274, 612, 683
MflI	RGATCY	3 cut(s)	298, 434, 715
MhlI	GDGCHC	3 cut(s)	213, 418, 748
MlsI	TGGCCA	1 cut(s)	637
MluCI	AATT	3 cut(s)	309, 314, 539
MluNI	TGGCCA	1 cut(s)	637
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	6 cut(s)	112, 118, 173, 385, 413, 571
Mox20I	TGGCCA	1 cut(s)	637
MscI	TGGCCA	1 cut(s)	637
MseI	TTAA	2 cut(s)	312, 615
Msp20I	TGGCCA	1 cut(s)	637
MspA1I	CMGCKG	1 cut(s)	680
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	4 cut(s)	233, 519, 591, 739
MvaI	CCWGG	4 cut(s)	233, 519, 591, 739
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	743
NdeI	CATATG	1 cut(s)	270
NdeII	GATC	4 cut(s)	67, 298, 434, 715
NlaIII	CATG	3 cut(s)	182, 392, 758
NlaIV	GGNNCC	3 cut(s)	300, 436, 717
NmuCI	GTSAC	2 cut(s)	73, 397
PagI	TCATGA	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PfeI	GAWTC	6 cut(s)	103, 275, 331, 524, 558, 674
PkrI	GCNGC	1 cut(s)	177
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Ppu21I	YACGTR	1 cut(s)	585
Psp6I	CCWGG	4 cut(s)	231, 517, 589, 737
PspEI	GGTNACC	1 cut(s)	397
PspFI	CCCAGC	1 cut(s)	719
PspGI	CCWGG	4 cut(s)	231, 517, 589, 737
PspN4I	GGNNCC	3 cut(s)	300, 436, 717
PspPI	GGNCC	2 cut(s)	4, 352
PsuI	RGATCY	3 cut(s)	298, 434, 715
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	7 cut(s)	11, 56, 230, 245, 410, 568, 783
RsaNI	GTAC	7 cut(s)	10, 55, 229, 244, 409, 567, 782
SaqAI	TTAA	2 cut(s)	312, 615
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	4 cut(s)	67, 298, 434, 715
Sau96I	GGNCC	2 cut(s)	4, 352
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	4 cut(s)	233, 519, 591, 739
SduI	GDGCHC	3 cut(s)	213, 418, 748
SetI	ASST	6 cut(s)	197, 234, 249, 396, 587, 682
SexAI	ACCWGGT	1 cut(s)	231
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	2 cut(s)	95, 749
SmoI	CTYRAG	2 cut(s)	95, 749
Sse9I	AATT	3 cut(s)	309, 314, 539
SsiI	CCGC	3 cut(s)	141, 304, 439
SspMI	CTAG	2 cut(s)	135, 659
StyD4I	CCNGG	4 cut(s)	231, 517, 589, 737
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	1 cut(s)	587
TaqI	TCGA	1 cut(s)	148
TasI	AATT	3 cut(s)	309, 314, 539
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	6 cut(s)	103, 275, 331, 524, 558, 674
Tru1I	TTAA	2 cut(s)	312, 615
Tru9I	TTAA	2 cut(s)	312, 615
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	2 cut(s)	73, 397
TseI	GCWGC	1 cut(s)	175
Tsp45I	GTSAC	2 cut(s)	73, 397
TspDTI	ATGAA	2 cut(s)	552, 771
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	220
VneI	GTGCAC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	462
XspI	CTAG	2 cut(s)	135, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.