Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003086

Physical Location & Seq

Genomic Coordinates Reverse (-)

19477392 .. 19479269

Gene Structure 1878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g21320.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGACCAGTACGTGAAAGTTGAGAAGATTGGTGAAGGAACTTATGGAGTGGTTTACAAGGCACGTGATCGAGTCACTAATGAGACTATAGCTTTGAAGAAAATTCGCTTGGAGCAGGAAGATGAGGGAGTGCCAAGCACTGCTATACGTGAGATTTCCCTCTTGAAAGAAATGCAGCATGGGAACATTGTCAGGTTACAGGATGTAGTGCACAGTGAGAAGCGCTTGTATCTGGTTTTTGAGTACCTGGACTTGGATCTGAAGAAGCATATGGATTCTACTCCTGAATTTGCAAAGGACCTTCGCCAAATAAAACTGTTTCTTTACCAGATTCTCAGAGGCATTGCTTACTGTCATTCACATAGGGTTCTTCATAGAGATCTATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072686 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

130

Amino Acids

15.19

Weight (kDa)

7.87

Isoelectric Point (pI)

26.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48750
fragaria_vesca	FvH4_1g27840 FvH4_1g27840 FvH4_1g27840
malus_domestica	MD02G1248900.v1.1 MD07G1067400.v1.1
prunus_persica	Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1
pyrus_communis	pycom02g21320
rosa_chinensis	RchiOBHm_Chr1g0333011 RchiOBHm_Chr1g0333051 RchiOBHm_Chr3g0489001
rosa_laevigata	RLG00000022900 RLG00000029629
rosa_multiflora	Rmu_co8022684.1_g000001 Rmu_sc0000117.1_g000041 Rmu_sc0000117.1_g000055 Rmu_sc0003088.1_g000001 Rmu_sc0021925.1_g000005
rosa_roxburghii	Rroxscaffold_4G00317830 Rroxscaffold_6G00393760
rosa_rugosa	Rorug01G0106600 Rorug03G0242500 Rorug03G0242500
rosa_samantha	Rh1AG129500 Rh1BG099000 Rh1CG123400 Rh1DG135300 Rh1DG135500 Rh3AG290900 Rh3BG327600 Rh3CG324900 Rh3DG323900
rosa_wichuraiana	Rw1G010280 Rw1G010330 Rw3G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	264
AcsI	RAATTY	2 cut(s)	102, 287
AcuI	CTGAAG	1 cut(s)	281
AcvI	CACGTG	1 cut(s)	65
AfaI	GTAC	2 cut(s)	11, 245
AfeI	AGCGCT	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	2 cut(s)	97, 166
AjnI	CCWGG	1 cut(s)	246
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	77
Alw44I	GTGCAC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	264
Aor51HI	AGCGCT	1 cut(s)	224
ApaLI	GTGCAC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	175
ApoI	RAATTY	2 cut(s)	102, 287
ArsI	GACNNNNNNTTYG	2 cut(s)	76, 108
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	4, 298
AsuHPI	GGTGA	1 cut(s)	44
AvaII	GGWCC	2 cut(s)	4, 298
BaeGI	GKGCMC	1 cut(s)	213
BbrPI	CACGTG	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	226
BglII	AGATCT	1 cut(s)	379
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	2 cut(s)	4, 298
BmgT120I	GGNCC	2 cut(s)	4, 298
BmrFI	CCNGG	1 cut(s)	248
BsaAI	YACGTR	3 cut(s)	13, 65, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	7
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	248
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	349
BseNI	ACTGG	1 cut(s)	7
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	67, 256, 379
BspCNI	CTCAG	1 cut(s)	348
BspPI	GGATC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	7
BssMI	GATC	3 cut(s)	67, 256, 379
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	3 cut(s)	215, 318, 353
BstBAI	YACGTR	3 cut(s)	13, 65, 149
BstDEI	CTNAG	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	208
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	3 cut(s)	70, 259, 382
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	3 cut(s)	67, 256, 379
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	1 cut(s)	87
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	2 cut(s)	256, 379
BstYI	RGATCY	2 cut(s)	256, 379
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	138, 220
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	4, 298
Csp6I	GTAC	2 cut(s)	10, 244
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	1 cut(s)	92
CviKI_1	RGCY	1 cut(s)	92
CviQI	GTAC	2 cut(s)	10, 244
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	3 cut(s)	69, 258, 381
DpnII	GATC	3 cut(s)	67, 256, 379
Eco47I	GGWCC	2 cut(s)	4, 298
Eco47III	AGCGCT	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	281
Eco72I	CACGTG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	246
FaeI	CATG	1 cut(s)	182
FaiI	YATR	8 cut(s)	45, 89, 146, 180, 270, 272, 363, 375
FatI	CATG	1 cut(s)	178
FauNDI	CATATG	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	176
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	176
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	1 cut(s)	176
HaeII	RGCGCY	1 cut(s)	226
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	182
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HinfI	GANTC	3 cut(s)	72, 275, 331
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	55, 211
Hpy188I	TCNGA	2 cut(s)	261, 338
Hpy188III	TCNNGA	2 cut(s)	163, 284
Hpy8I	GTNNAC	2 cut(s)	55, 211
HpyAV	CCTTC	2 cut(s)	29, 311
HpyCH4III	ACNGT	3 cut(s)	215, 318, 353
HpyCH4IV	ACGT	3 cut(s)	12, 64, 148
HpyCH4V	TGCA	3 cut(s)	175, 211, 293
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	3 cut(s)	12, 64, 148
Hsp92II	CATG	1 cut(s)	182
HspAI	GCGC	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	67, 256, 379
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	9 cut(s)	20, 101, 178, 185, 218, 233, 260, 297, 341
Lsp1109I	GCAGC	1 cut(s)	187
MaeII	ACGT	3 cut(s)	12, 64, 148
MaeIII	GTNAC	2 cut(s)	73, 195
MalI	GATC	3 cut(s)	69, 258, 381
MboI	GATC	3 cut(s)	67, 256, 379
MboII	GAAGA	5 cut(s)	37, 109, 131, 274, 362
MflI	RGATCY	2 cut(s)	256, 379
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	2 cut(s)	102, 287
MlyI	GAGTC	1 cut(s)	81
MnlI	CCTC	3 cut(s)	118, 170, 332
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
NdeI	CATATG	1 cut(s)	270
NdeII	GATC	3 cut(s)	67, 256, 379
NlaIII	CATG	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	275, 331
PkrI	GCNGC	1 cut(s)	177
PleI	GAGTC	1 cut(s)	80
PmaCI	CACGTG	1 cut(s)	65
PmlI	CACGTG	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	80
Ppu21I	YACGTR	3 cut(s)	13, 65, 149
PpuMI	RGGWCCY	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	246
PspCI	CACGTG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	4, 298
PspPPI	RGGWCCY	1 cut(s)	298
PsuI	RGATCY	2 cut(s)	256, 379
RsaI	GTAC	2 cut(s)	11, 245
RsaNI	GTAC	2 cut(s)	10, 244
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	3 cut(s)	67, 256, 379
Sau96I	GGNCC	2 cut(s)	4, 298
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	7 cut(s)	15, 67, 94, 151, 197, 249, 303
SfcI	CTRYAG	1 cut(s)	87
SinI	GGWCC	2 cut(s)	4, 298
Sse9I	AATT	2 cut(s)	102, 287
StyD4I	CCNGG	1 cut(s)	246
TaaI	ACNGT	3 cut(s)	215, 318, 353
TaiI	ACGT	3 cut(s)	15, 67, 151
TaqI	TCGA	1 cut(s)	70
TasI	AATT	2 cut(s)	102, 287
TfiI	GAWTC	2 cut(s)	275, 331
TscAI	CASTG	2 cut(s)	145, 220
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	362
TspRI	CASTG	2 cut(s)	145, 220
VneI	GTGCAC	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	4, 298
XapI	RAATTY	2 cut(s)	102, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.