Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000117.1

Orthogroup ID

OG0003086

Physical Location & Seq

Genomic Coordinates Forward (+)

317220 .. 319977

Gene Structure 2758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000117.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggacaagtacgagaaagtagagaagattggggaaggaacttatggcgtggtttacaaggctcgtgatcgtctcaccaatgaaaccatagctttgaagaagattcggttggagcaggaagatgagggcgtcccaagcactgccatcagagaaatttctctcttgaaagaaatgcagcatgccaacattgtcaggttacaggatgttgtgcatagtgagaagcgcttgtatctggtgtttgagtacctggacttggatttgaagaagtatatggattcttctcctgaatttgcaaaggatcctcgccagataaaaatcccgcctctcagccctccccgcctgcgcgcttgcacctcagccttgccctacgccttgcagcctcccacagctggccagaccgacgcccagcgaacagcgaagagcaatttgctctccgcacctaacccatcatcttcctcacctctgcccattagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072686 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

158

Amino Acids

17.77

Weight (kDa)

8.59

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48750
fragaria_vesca	FvH4_1g27840 FvH4_1g27840 FvH4_1g27840
malus_domestica	MD02G1248900.v1.1 MD07G1067400.v1.1
prunus_persica	Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1
pyrus_communis	pycom02g21320
rosa_chinensis	RchiOBHm_Chr1g0333011 RchiOBHm_Chr1g0333051 RchiOBHm_Chr3g0489001
rosa_laevigata	RLG00000022900 RLG00000029629
rosa_multiflora	Rmu_co8022684.1_g000001 Rmu_sc0000117.1_g000041 Rmu_sc0000117.1_g000055 Rmu_sc0003088.1_g000001 Rmu_sc0021925.1_g000005
rosa_roxburghii	Rroxscaffold_4G00317830 Rroxscaffold_6G00393760
rosa_rugosa	Rorug01G0106600 Rorug03G0242500 Rorug03G0242500
rosa_samantha	Rh1AG129500 Rh1BG099000 Rh1CG123400 Rh1DG135300 Rh1DG135500 Rh3AG290900 Rh3BG327600 Rh3CG324900 Rh3DG323900
rosa_wichuraiana	Rw1G010280 Rw1G010330 Rw3G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	345
AciI	CCGC	3 cut(s)	320, 337, 435
AclWI	GGATC	2 cut(s)	293, 306
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	2 cut(s)	153, 287
AcyI	GRCGYC	2 cut(s)	129, 402
AfaI	GTAC	2 cut(s)	11, 245
AfeI	AGCGCT	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	253, 389
AgsI	TTSAA	3 cut(s)	97, 166, 262
AjnI	CCWGG	1 cut(s)	246
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	2 cut(s)	92, 389
AluI	AGCT	2 cut(s)	92, 389
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	293, 306
Aor51HI	AGCGCT	1 cut(s)	224
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	2 cut(s)	175, 376
ApoI	RAATTY	2 cut(s)	153, 287
AspLEI	GCGC	3 cut(s)	225, 345, 347
AsuHPI	GGTGA	2 cut(s)	67, 450
BalI	TGGCCA	1 cut(s)	393
BamHI	GGATCC	1 cut(s)	298
BauI	CACGAG	1 cut(s)	63
BbvCI	CCTCAGC	1 cut(s)	355
BbvI	GCAGC	2 cut(s)	187, 388
BccI	CCATC	2 cut(s)	152, 454
BciT130I	CCWGG	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	77
BfoI	RGCGCY	1 cut(s)	226
BisI	GCNGC	2 cut(s)	176, 377
BlsI	GCNGC	2 cut(s)	177, 378
Bme1390I	CCNGG	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	1 cut(s)	248
Bpu10I	CCTNAGC	1 cut(s)	355
BsaBI	GATNNNNATC	1 cut(s)	314
BsaHI	GRCGYC	2 cut(s)	129, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 389
Bse8I	GATNNNNATC	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	248
BseGI	GGATG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	314
BseLI	CCNNNNNNNGG	2 cut(s)	253, 389
BseMII	CTCAG	2 cut(s)	340, 369
BsePI	GCGCGC	1 cut(s)	343
BseXI	GCAGC	2 cut(s)	187, 388
BseYI	CCCAGC	1 cut(s)	405
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	393
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	2 cut(s)	253, 389
BsmAI	GTCTC	1 cut(s)	77
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	393
Bsp143I	GATC	2 cut(s)	67, 298
BspACI	CCGC	3 cut(s)	320, 337, 435
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	2 cut(s)	339, 368
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	2 cut(s)	293, 306
BspQI	GCTCTTC	1 cut(s)	413
BssHII	GCGCGC	1 cut(s)	343
BssMI	GATC	2 cut(s)	67, 298
BssNI	GRCGYC	2 cut(s)	129, 402
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	248
Bst6I	CTCTTC	1 cut(s)	413
BstACI	GRCGYC	2 cut(s)	129, 402
BstC8I	GCNNGC	5 cut(s)	180, 341, 345, 349, 391
BstDEI	CTNAG	2 cut(s)	326, 355
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	345
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	3 cut(s)	225, 345, 347
BstKTI	GATC	2 cut(s)	70, 301
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	67, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 336
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	246
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	187, 388
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	5 cut(s)	180, 341, 345, 349, 391
CfoI	GCGC	3 cut(s)	225, 345, 347
CseI	GACGC	2 cut(s)	118, 410
Csp6I	GTAC	2 cut(s)	10, 244
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	7 cut(s)	62, 92, 330, 359, 379, 389, 393
CviKI_1	RGCY	7 cut(s)	62, 92, 330, 359, 379, 389, 393
CviQI	GTAC	2 cut(s)	10, 244
DdeI	CTNAG	2 cut(s)	326, 355
DpnI	GATC	2 cut(s)	69, 300
DpnII	GATC	2 cut(s)	67, 298
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Eco47III	AGCGCT	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	1 cut(s)	182
FaiI	YATR	6 cut(s)	45, 89, 180, 213, 270, 272
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	1 cut(s)	178
FauI	CCCGC	2 cut(s)	327, 344
Fnu4HI	GCNGC	2 cut(s)	176, 377
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	176, 377
GlaI	GCGC	3 cut(s)	224, 344, 346
GluI	GCNGC	2 cut(s)	176, 377
GsaI	CCCAGC	1 cut(s)	409
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	1 cut(s)	393
HgaI	GACGC	2 cut(s)	118, 410
HhaI	GCGC	3 cut(s)	225, 345, 347
Hin1I	GRCGYC	2 cut(s)	129, 402
Hin1II	CATG	1 cut(s)	182
Hin6I	GCGC	3 cut(s)	223, 343, 345
HinP1I	GCGC	3 cut(s)	223, 343, 345
HinfI	GANTC	2 cut(s)	103, 275
HphI	GGTGA	2 cut(s)	67, 450
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	149
Hpy188III	TCNNGA	3 cut(s)	65, 163, 284
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	1 cut(s)	29
HpyCH4V	TGCA	5 cut(s)	175, 211, 293, 351, 376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 336
HpyF3I	CTNAG	2 cut(s)	326, 355
Hsp92I	GRCGYC	2 cut(s)	129, 402
Hsp92II	CATG	1 cut(s)	182
HspAI	GCGC	3 cut(s)	223, 343, 345
Kzo9I	GATC	2 cut(s)	67, 298
LguI	GCTCTTC	1 cut(s)	413
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	2 cut(s)	187, 388
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	2 cut(s)	69, 300
MboI	GATC	2 cut(s)	67, 298
MboII	GAAGA	8 cut(s)	37, 109, 112, 131, 270, 274, 430, 444
MflI	RGATCY	1 cut(s)	298
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	3 cut(s)	153, 287, 424
MluNI	TGGCCA	1 cut(s)	393
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	8 cut(s)	118, 312, 333, 342, 364, 390, 466, 471
Mox20I	TGGCCA	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	1 cut(s)	475
Msp20I	TGGCCA	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	135, 336
NdeII	GATC	2 cut(s)	67, 298
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	300
NspI	RCATGY	1 cut(s)	182
PaeI	GCATGC	1 cut(s)	182
PauI	GCGCGC	1 cut(s)	343
PciSI	GCTCTTC	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	103, 275
PkrI	GCNGC	2 cut(s)	177, 378
Psp6I	CCWGG	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	298
PteI	GCGCGC	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	2 cut(s)	11, 245
RsaNI	GTAC	2 cut(s)	10, 244
SapI	GCTCTTC	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	475
SatI	GCNGC	2 cut(s)	176, 377
Sau3AI	GATC	2 cut(s)	67, 298
ScrFI	CCNGG	1 cut(s)	248
SetI	ASST	7 cut(s)	94, 197, 249, 356, 391, 442, 463
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	3 cut(s)	153, 287, 424
SsiI	CCGC	3 cut(s)	320, 337, 435
StyD4I	CCNGG	1 cut(s)	246
TaqII	GACCGA	1 cut(s)	413
TasI	AATT	3 cut(s)	153, 287, 424
TfiI	GAWTC	2 cut(s)	103, 275
Tru1I	TTAA	1 cut(s)	475
Tru9I	TTAA	1 cut(s)	475
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	2 cut(s)	175, 376
TspDTI	ATGAA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	145
XapI	RAATTY	2 cut(s)	153, 287
XceI	RCATGY	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.