Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003086

Physical Location & Seq

Genomic Coordinates Forward (+)

34982749 .. 34986470

Gene Structure 3722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG290900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGACCAGTACGAGAAAGTTGAGAAGATCGGCGAAGGGACTTACGGAGTGGTTTACAAGGCTCGTGATCGTGTTACGAATGAGACTATAGCTCTCAAGAAGATTCGGTTGGAGCAGGAAGATGAGGGAGTGCCTAGCACCGCCATTAGAGAGATTTCTCTACTCAAAGAAATGCAGCACGGCAACATTGTCAGGTTACAGGATGTAGTGCACAGTGAGAAGCGCTTGTATCTGGTGTTTGAGTACCTGGACTTGGATCTGAAGAAACATATGGATTCTACTCCTGATTTTGCAAAGGATCCCCGCCAAATAAAATTGTTCCTTTATCAGATTCTCCGAGGCATTGCTTATTGTCATTCACATAGAGTTCTTCATCGCGATCTGAAACCCCAGAATCTGCTGATAGATCGCCGTACTAATGCACTCAAACTTGCAGATTTTGGACTGGCCCGAGCATTTGGTATTCCTGTTAGGACATTTACTCATGAGGTGGTCACCCTCTGGTACAGAGCACCGGAGATATTGCTTGGATCCCGCCATTACTCTACACCAGTTGATGTGTGGTCAGTGGGTTGTATATTTGCTGAGATGGTAAACCAACGGCCTTTATTTCCTGGGGATTCTGAGATTGATGAATTGTTCAAGATATTTAGAATCTTGGGTACTCCAAATGAGGATACATGGCCTGGAGTGAGTAGTATGCCTGATTTTAAATCTTCCTTTCCTAAGTGGCCTTCTAAGGACTTGGCAACTCTAGTTCCAAATCTTGAATCAGGTGGTGTTGATCTTCTTTGTAAAATGCTCTGCTTGGATCCCAGCAAAAGGATTACAGCCAGGAGTGCTCTTGAGCATGAATACTTCAAAGATATTCCATTTGTACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072686 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

294

Amino Acids

33.86

Weight (kDa)

6.76

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 287	4.8e-79	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 199	1.9e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48750
fragaria_vesca	FvH4_1g27840 FvH4_1g27840 FvH4_1g27840
malus_domestica	MD02G1248900.v1.1 MD07G1067400.v1.1
prunus_persica	Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1
pyrus_communis	pycom02g21320
rosa_chinensis	RchiOBHm_Chr1g0333011 RchiOBHm_Chr1g0333051 RchiOBHm_Chr3g0489001
rosa_laevigata	RLG00000022900 RLG00000029629
rosa_multiflora	Rmu_co8022684.1_g000001 Rmu_sc0000117.1_g000041 Rmu_sc0000117.1_g000055 Rmu_sc0003088.1_g000001 Rmu_sc0021925.1_g000005
rosa_roxburghii	Rroxscaffold_4G00317830 Rroxscaffold_6G00393760
rosa_rugosa	Rorug01G0106600 Rorug03G0242500 Rorug03G0242500
rosa_samantha	Rh1AG129500 Rh1BG099000 Rh1CG123400 Rh1DG135300 Rh1DG135500 Rh3AG290900 Rh3BG327600 Rh3CG324900 Rh3DG323900
rosa_wichuraiana	Rw1G010280 Rw1G010330 Rw3G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	378
AciI	CCGC	3 cut(s)	141, 304, 535
AclWI	GGATC	7 cut(s)	264, 293, 306, 525, 538, 806, 819
AcuI	CTGAAG	1 cut(s)	281
AfaI	GTAC	6 cut(s)	11, 245, 415, 506, 664, 879
AfeI	AGCGCT	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	253, 822
AgsI	TTSAA	3 cut(s)	643, 770, 862
AjnI	CCWGG	4 cut(s)	246, 613, 685, 833
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw21I	GWGCWC	3 cut(s)	213, 514, 844
Alw26I	GTCTC	1 cut(s)	77
Alw44I	GTGCAC	1 cut(s)	209
AlwI	GGATC	7 cut(s)	264, 293, 306, 525, 538, 806, 819
AlwNI	CAGNNNCTG	1 cut(s)	397
Ama87I	CYCGRG	1 cut(s)	450
Aor51HI	AGCGCT	1 cut(s)	224
AoxI	GGCC	4 cut(s)	447, 602, 683, 731
ApaLI	GTGCAC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	175
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	4, 448
AsuHPI	GGTGA	1 cut(s)	487
AvaI	CYCGRG	1 cut(s)	450
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	213
BamHI	GGATCC	3 cut(s)	298, 530, 811
BauI	CACGAG	1 cut(s)	63
Bbv12I	GWGCWC	3 cut(s)	213, 514, 844
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	583
BceAI	ACGGC	3 cut(s)	196, 396, 617
BciT130I	CCWGG	4 cut(s)	248, 615, 687, 835
BciVI	GTATCC	1 cut(s)	670
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	2 cut(s)	135, 755
BfmI	CTRYAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	670
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
Bme1390I	CCNGG	4 cut(s)	248, 615, 687, 835
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	2 cut(s)	4, 448
BmiI	GGNNCC	3 cut(s)	300, 532, 813
BmrFI	CCNGG	4 cut(s)	248, 615, 687, 835
BpmI	CTGGAG	1 cut(s)	708
BpuEI	CTTGAG	2 cut(s)	80, 866
BsaJI	CCNNGG	2 cut(s)	337, 614
BsaWI	WCCGGW	1 cut(s)	514
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 822
Bse1I	ACTGG	3 cut(s)	7, 450, 551
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	4 cut(s)	248, 615, 687, 835
BseDI	CCNNGG	2 cut(s)	337, 614
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	253, 822
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	576, 615
BseNI	ACTGG	3 cut(s)	7, 450, 551
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	187
BseYI	CCCAGC	1 cut(s)	815
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	4 cut(s)	449, 604, 685, 733
BsiHKAI	GWGCWC	3 cut(s)	213, 514, 844
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	515
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	253, 822
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	4 cut(s)	449, 604, 685, 733
BsoBI	CYCGRG	1 cut(s)	450
Bsp1286I	GDGCHC	3 cut(s)	213, 514, 844
Bsp143I	GATC	9 cut(s)	27, 67, 256, 298, 379, 406, 530, 784, 811
Bsp68I	TCGCGA	1 cut(s)	378
BspACI	CCGC	3 cut(s)	141, 304, 535
BspANI	GGCC	4 cut(s)	449, 604, 685, 733
BspCNI	CTCAG	2 cut(s)	577, 616
BspFNI	CGCG	1 cut(s)	378
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	3 cut(s)	300, 532, 813
BspPI	GGATC	7 cut(s)	264, 293, 306, 525, 538, 806, 819
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	3 cut(s)	7, 450, 551
BssECI	CCNNGG	2 cut(s)	337, 614
BssMI	GATC	9 cut(s)	27, 67, 256, 298, 379, 406, 530, 784, 811
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
Bst2UI	CCWGG	4 cut(s)	248, 615, 687, 835
Bst4CI	ACNGT	1 cut(s)	215
BstDEI	CTNAG	4 cut(s)	585, 624, 726, 738
BstEII	GGTNACC	1 cut(s)	493
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	378
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	9 cut(s)	30, 70, 259, 301, 382, 409, 533, 787, 814
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	9 cut(s)	27, 67, 256, 298, 379, 406, 530, 784, 811
BstMWI	GCNNNNNNNGC	1 cut(s)	839
BstNI	CCWGG	4 cut(s)	248, 615, 687, 835
BstPI	GGTNACC	1 cut(s)	493
BstSCI	CCNGG	4 cut(s)	246, 613, 685, 833
BstSFI	CTRYAG	1 cut(s)	87
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	4 cut(s)	256, 298, 530, 811
BstYI	RGATCY	4 cut(s)	256, 298, 530, 811
BsuI	GTATCC	1 cut(s)	670
BsuRI	GGCC	4 cut(s)	449, 604, 685, 733
BtgZI	GCGATG	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	220, 573
BtuMI	TCGCGA	1 cut(s)	378
CaiI	CAGNNNCTG	1 cut(s)	397
CciI	TCATGA	1 cut(s)	484
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	4, 448
Csp6I	GTAC	6 cut(s)	10, 244, 414, 505, 663, 878
CviAII	CATG	3 cut(s)	485, 681, 851
CviJI	RGCY	7 cut(s)	62, 92, 449, 604, 685, 733, 833
CviKI_1	RGCY	7 cut(s)	62, 92, 449, 604, 685, 733, 833
CviQI	GTAC	6 cut(s)	10, 244, 414, 505, 663, 878
DdeI	CTNAG	4 cut(s)	585, 624, 726, 738
DpnI	GATC	9 cut(s)	29, 69, 258, 300, 381, 408, 532, 786, 813
DpnII	GATC	9 cut(s)	27, 67, 256, 298, 379, 406, 530, 784, 811
DraI	TTTAAA	1 cut(s)	712
Eco47I	GGWCC	1 cut(s)	4
Eco47III	AGCGCT	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	450
Eco91I	GGTNACC	1 cut(s)	493
EcoO65I	GGTNACC	1 cut(s)	493
EcoRII	CCWGG	4 cut(s)	246, 613, 685, 833
FaeI	CATG	3 cut(s)	488, 684, 854
FaiI	YATR	9 cut(s)	89, 270, 272, 363, 486, 578, 682, 701, 852
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	3 cut(s)	484, 680, 850
FauI	CCCGC	2 cut(s)	311, 542
FauNDI	CATATG	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	176
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	176
FspBI	CTAG	2 cut(s)	135, 755
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	1 cut(s)	176
GsaI	CCCAGC	1 cut(s)	819
GsuI	CTGGAG	1 cut(s)	708
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	4 cut(s)	449, 604, 685, 733
HapII	CCGG	1 cut(s)	515
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	3 cut(s)	488, 684, 854
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HinfI	GANTC	7 cut(s)	103, 275, 331, 394, 620, 654, 770
HpaII	CCGG	1 cut(s)	515
HphI	GGTGA	1 cut(s)	487
Hpy166II	GTNNAC	3 cut(s)	55, 211, 595
Hpy188I	TCNGA	5 cut(s)	261, 330, 338, 384, 625
Hpy188III	TCNNGA	8 cut(s)	65, 97, 284, 377, 485, 643, 767, 845
Hpy8I	GTNNAC	3 cut(s)	55, 211, 595
HpyAV	CCTTC	2 cut(s)	29, 744
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	5 cut(s)	175, 211, 293, 422, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	839
HpyF3I	CTNAG	4 cut(s)	585, 624, 726, 738
Hsp92II	CATG	3 cut(s)	488, 684, 854
HspAI	GCGC	1 cut(s)	223
Kzo9I	GATC	9 cut(s)	27, 67, 256, 298, 379, 406, 530, 784, 811
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	1 cut(s)	187
MaeI	CTAG	2 cut(s)	135, 755
MaeIII	GTNAC	3 cut(s)	73, 195, 493
MalI	GATC	9 cut(s)	29, 69, 258, 300, 381, 408, 532, 786, 813
MboI	GATC	9 cut(s)	27, 67, 256, 298, 379, 406, 530, 784, 811
MboII	GAAGA	7 cut(s)	37, 112, 131, 274, 362, 708, 779
MflI	RGATCY	4 cut(s)	256, 298, 530, 811
MhlI	GDGCHC	3 cut(s)	213, 514, 844
MluCI	AATT	2 cut(s)	314, 635
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	5 cut(s)	118, 332, 481, 509, 667
MseI	TTAA	1 cut(s)	711
MspI	CCGG	1 cut(s)	515
MspR9I	CCNGG	4 cut(s)	248, 615, 687, 835
MvaI	CCWGG	4 cut(s)	248, 615, 687, 835
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	839
NdeI	CATATG	1 cut(s)	270
NdeII	GATC	9 cut(s)	27, 67, 256, 298, 379, 406, 530, 784, 811
NlaIII	CATG	3 cut(s)	488, 684, 854
NlaIV	GGNNCC	3 cut(s)	300, 532, 813
NmuCI	GTSAC	1 cut(s)	493
NruI	TCGCGA	1 cut(s)	378
PagI	TCATGA	1 cut(s)	484
PfeI	GAWTC	7 cut(s)	103, 275, 331, 394, 620, 654, 770
PkrI	GCNGC	1 cut(s)	177
Psp6I	CCWGG	4 cut(s)	246, 613, 685, 833
PspEI	GGTNACC	1 cut(s)	493
PspFI	CCCAGC	1 cut(s)	815
PspGI	CCWGG	4 cut(s)	246, 613, 685, 833
PspN4I	GGNNCC	3 cut(s)	300, 532, 813
PspPI	GGNCC	2 cut(s)	4, 448
PstNI	CAGNNNCTG	1 cut(s)	397
PsuI	RGATCY	4 cut(s)	256, 298, 530, 811
RruI	TCGCGA	1 cut(s)	378
RsaI	GTAC	6 cut(s)	11, 245, 415, 506, 664, 879
RsaNI	GTAC	6 cut(s)	10, 244, 414, 505, 663, 878
SaqAI	TTAA	1 cut(s)	711
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	9 cut(s)	27, 67, 256, 298, 379, 406, 530, 784, 811
Sau96I	GGNCC	2 cut(s)	4, 448
ScrFI	CCNGG	4 cut(s)	248, 615, 687, 835
SduI	GDGCHC	3 cut(s)	213, 514, 844
SetI	ASST	5 cut(s)	94, 197, 249, 492, 778
SfcI	CTRYAG	1 cut(s)	87
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	2 cut(s)	95, 845
SmoI	CTYRAG	2 cut(s)	95, 845
Sse9I	AATT	2 cut(s)	314, 635
SsiI	CCGC	3 cut(s)	141, 304, 535
SspMI	CTAG	2 cut(s)	135, 755
StyD4I	CCNGG	4 cut(s)	246, 613, 685, 833
TaaI	ACNGT	1 cut(s)	215
TasI	AATT	2 cut(s)	314, 635
TfiI	GAWTC	7 cut(s)	103, 275, 331, 394, 620, 654, 770
Tru1I	TTAA	1 cut(s)	711
Tru9I	TTAA	1 cut(s)	711
TscAI	CASTG	2 cut(s)	220, 573
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	3 cut(s)	362, 648, 867
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	220, 573
VneI	GTGCAC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	558
XspI	CTAG	2 cut(s)	135, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.