RchiOBHm_Chr1g0333051
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
24994039 .. 24996094
2056 bp
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UTR
Exon/CDS
Intron
PRQ56189

Sequence Viewer

Length: 477 bp
ATGGACAAGTACGAGAAAGTAGAGAAGATTGGGGAAGGAACTTATGGCGTGGTTTACAAGGCTCGTGATCGTCTCACCAATGAAACCATAGCTTTGAAGAAGATTCGGTTGGAGCAGGAAGATGAGGGCGTCCCAAGCACTGCCATTAGAGAAATTTCTCTCTTGAAAGAAATGCAGCATGCCAACATTGTCAGGTTACAGGATGTTGTGCATAGTGAGAAGCGCTTGTATCTGGTGTTTGAGTACCTGGACTTGGATTTGAAGAAGTATATGGATTCTTCTCCTGAATTTGCAAAGGATCCTCGCCAGATAAAAAAAATGCTCTGCTTGGATCCGAGCAAAAGGATTATGGCAAGGGGTGCTCTTGAGCATGAATACTTCAAAGATATTCCATTTGTTCCCCGAGTCATTTCTTCCCATTGTGGCAGTGTGTGTACTATCGTTGAGCATATCCTGTTAACTTGGTTTGCAAGTTAA

Protein Analysis

158

Amino Acids

18.38

Weight (kDa)

6.96

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 92 2.6e-23 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 6 - 105 3.5e-13 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 293, 306, 326, 339
AcsI RAATTY 2 cut(s) 153, 287
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 3 cut(s) 11, 245, 436
AfeI AGCGCT 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 4 cut(s) 97, 166, 262, 382
AjnI CCWGG 1 cut(s) 246
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 4 cut(s) 293, 306, 326, 339
Ama87I CYCGRG 1 cut(s) 402
Aor51HI AGCGCT 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 2 cut(s) 153, 287
AspLEI GCGC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 67
AvaI CYCGRG 1 cut(s) 402
BamHI GGATCC 2 cut(s) 298, 331
BauI CACGAG 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 226
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bme1390I CCNGG 1 cut(s) 248
BmeT110I CYCGRG 1 cut(s) 402
BmiI GGNNCC 2 cut(s) 300, 333
BmrFI CCNGG 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 386
BsaHI GRCGYC 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 248
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 253
BseXI GCAGC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 364
BsiHKCI CYCGRG 1 cut(s) 402
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 3 cut(s) 67, 298, 331
BspLI GGNNCC 2 cut(s) 300, 333
BspPI GGATC 4 cut(s) 293, 306, 326, 339
BssMI GATC 3 cut(s) 67, 298, 331
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 248
BstACI GRCGYC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 180
BstF5I GGATG 1 cut(s) 208
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 3 cut(s) 70, 301, 334
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 3 cut(s) 67, 298, 331
BstMWI GCNNNNNNNGC 2 cut(s) 135, 359
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 2 cut(s) 298, 331
BstYI RGATCY 2 cut(s) 298, 331
BtsCI GGATG 1 cut(s) 208
BtsI GCAGTG 2 cut(s) 138, 433
BtsIMutI CAGTG 2 cut(s) 138, 433
Cac8I GCNNGC 1 cut(s) 180
CfoI GCGC 1 cut(s) 225
CseI GACGC 1 cut(s) 118
Csp6I GTAC 3 cut(s) 10, 244, 435
CviAII CATG 2 cut(s) 179, 371
CviJI RGCY 2 cut(s) 62, 92
CviKI_1 RGCY 2 cut(s) 62, 92
CviQI GTAC 3 cut(s) 10, 244, 435
DpnI GATC 3 cut(s) 69, 300, 333
DpnII GATC 3 cut(s) 67, 298, 331
Eco47III AGCGCT 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 2 cut(s) 182, 374
FaiI YATR 9 cut(s) 45, 89, 180, 213, 270, 272, 350, 372, 450
FaqI GGGAC 1 cut(s) 116
FatI CATG 2 cut(s) 178, 370
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 176
GlaI GCGC 1 cut(s) 224
GluI GCNGC 1 cut(s) 176
HaeII RGCGCY 1 cut(s) 226
HgaI GACGC 1 cut(s) 118
HhaI GCGC 1 cut(s) 225
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 2 cut(s) 182, 374
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HinfI GANTC 3 cut(s) 103, 275, 405
HpaI GTTAAC 1 cut(s) 459
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 3 cut(s) 55, 435, 459
Hpy188I TCNGA 1 cut(s) 336
Hpy188III TCNNGA 4 cut(s) 65, 163, 284, 365
Hpy8I GTNNAC 3 cut(s) 55, 435, 459
HpyAV CCTTC 1 cut(s) 29
HpyCH4V TGCA 4 cut(s) 175, 211, 293, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 359
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 2 cut(s) 182, 374
HspAI GCGC 1 cut(s) 223
KspAI GTTAAC 1 cut(s) 459
Kzo9I GATC 3 cut(s) 67, 298, 331
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 9 cut(s) 101, 178, 185, 218, 233, 260, 297, 320, 467
Lsp1109I GCAGC 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 195
MalI GATC 3 cut(s) 69, 300, 333
MboI GATC 3 cut(s) 67, 298, 331
MboII GAAGA 7 cut(s) 37, 109, 112, 131, 270, 274, 405
MflI RGATCY 2 cut(s) 298, 331
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 2 cut(s) 153, 287
MlyI GAGTC 1 cut(s) 414
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 2 cut(s) 118, 312
MseI TTAA 2 cut(s) 458, 475
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 135, 359
NdeII GATC 3 cut(s) 67, 298, 331
NlaIII CATG 2 cut(s) 182, 374
NlaIV GGNNCC 2 cut(s) 300, 333
NspI RCATGY 1 cut(s) 182
PaeI GCATGC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 103, 275
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 300, 333
PsuI RGATCY 2 cut(s) 298, 331
RsaI GTAC 3 cut(s) 11, 245, 436
RsaNI GTAC 3 cut(s) 10, 244, 435
SaqAI TTAA 2 cut(s) 458, 475
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 3 cut(s) 67, 298, 331
SchI GAGTC 1 cut(s) 414
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 364
SetI ASST 3 cut(s) 94, 197, 249
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SphI GCATGC 1 cut(s) 182
Sse9I AATT 2 cut(s) 153, 287
StyD4I CCNGG 1 cut(s) 246
TasI AATT 2 cut(s) 153, 287
TatI WGTACW 1 cut(s) 434
TfiI GAWTC 2 cut(s) 103, 275
Tru1I TTAA 2 cut(s) 458, 475
Tru9I TTAA 2 cut(s) 458, 475
TscAI CASTG 2 cut(s) 145, 433
TseI GCWGC 1 cut(s) 175
TspDTI ATGAA 2 cut(s) 96, 387
TspRI CASTG 2 cut(s) 145, 433
XapI RAATTY 2 cut(s) 153, 287
XceI RCATGY 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.