Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021925.1

Orthogroup ID

OG0003086

Physical Location & Seq

Genomic Coordinates Reverse (-)

16042 .. 19258

Gene Structure 3217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021925.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atggcgggtactaagaatgtgaagaagacaaagtttatctcacaaaatggggcaaaatgtgttttggaaatggttgatgagaaagctgtagctgctccagtggaggaggatacgacaattgtttctactagcattgatcctagggaagcctcttttggagcatctgctacgaaattagcgggtaatcacggtttgccaaatgagtgcttcggcctccttgggacggattcttcgggagaatttgaagcctactcgatggacaagtacgagaaagtagagaagattggggaaggaacttatggcgtggtttacaaggctcgtgatcgtctcaccaatgaaaccatagctttgaagaagattcggttggagcaggaagatgagggcgtcccaagcactgccattagagaaatttctctcctgaaagaaatgcagcatgccaacattgtcaggttacaggatgttgtgcatagtgagaagcgcttgtatctggtgtttgagtacctggacttggatttgaagaagtatatggattcttctcctgaatttgcaaaggatcctcgccagataaaaatgttcctttatcagattctcagaggcattgcttattgtcattcacatagagttcttcatcgagatctgaagccccagaatctactgatagatcgtcgcaccaatgcactaaagcttgcagattttggactggcccgagcgtttggtattcctgttaggacatacactcatgaggtggtgactctctggtacagagcaccggaaattttgctcggatctggccattattcgactccagttgatgtgtggtcagtgggttgtatatttgctgagatgttaaaccaacgacctttatttccaggcgattctgagattgatgaattgttcaagatatttagaatcttgggtactccaaatgaagatacatggccgggagtgaattctttgcctgattttaaatcttcctttcctaagtggctttctaaggacttggcaactttagttccaaatcttgaatcagctggtgttgacattctttcagtaagttcacactacatttctccctcactggggattatcagcatgtacatctctactgtgacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072686 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

371

Amino Acids

41.59

Weight (kDa)

5.91

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48750
fragaria_vesca	FvH4_1g27840 FvH4_1g27840 FvH4_1g27840
malus_domestica	MD02G1248900.v1.1 MD07G1067400.v1.1
prunus_persica	Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1
pyrus_communis	pycom02g21320
rosa_chinensis	RchiOBHm_Chr1g0333011 RchiOBHm_Chr1g0333051 RchiOBHm_Chr3g0489001
rosa_laevigata	RLG00000022900 RLG00000029629
rosa_multiflora	Rmu_co8022684.1_g000001 Rmu_sc0000117.1_g000041 Rmu_sc0000117.1_g000055 Rmu_sc0003088.1_g000001 Rmu_sc0021925.1_g000005
rosa_roxburghii	Rroxscaffold_4G00317830 Rroxscaffold_6G00393760
rosa_rugosa	Rorug01G0106600 Rorug03G0242500 Rorug03G0242500
rosa_samantha	Rh1AG129500 Rh1BG099000 Rh1CG123400 Rh1DG135300 Rh1DG135500 Rh3AG290900 Rh3BG327600 Rh3CG324900 Rh3DG323900
rosa_wichuraiana	Rw1G010280 Rw1G010330 Rw3G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 179
AclWI	GGATC	4 cut(s)	131, 548, 561, 793
AcoI	YGGCCR	2 cut(s)	790, 938
AcsI	RAATTY	5 cut(s)	239, 408, 542, 774, 949
AcuI	CTGAAG	1 cut(s)	659
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	6 cut(s)	10, 266, 500, 761, 919, 1097
AfeI	AGCGCT	1 cut(s)	479
AfiI	CCNNNNNNNGG	4 cut(s)	223, 508, 1079, 1080
AgsI	TTSAA	5 cut(s)	245, 352, 517, 898, 1025
AjnI	CCWGG	2 cut(s)	501, 868
AjuI	GAANNNNNNNTTGG	4 cut(s)	138, 170, 347, 379
AluBI	AGCT	5 cut(s)	86, 92, 347, 685, 1031
AluI	AGCT	5 cut(s)	86, 92, 347, 685, 1031
Alw21I	GWGCWC	1 cut(s)	769
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	4 cut(s)	131, 548, 561, 793
Ama87I	CYCGRG	1 cut(s)	705
Aor51HI	AGCGCT	1 cut(s)	479
AoxI	GGCC	4 cut(s)	211, 702, 790, 938
ApeKI	GCWGC	2 cut(s)	92, 430
ApoI	RAATTY	5 cut(s)	239, 408, 542, 774, 949
ArsI	GACNNNNNNTTYG	2 cut(s)	214, 246
AspA2I	CCTAGG	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	703
AsuC2I	CCSGG	1 cut(s)	942
AsuHPI	GGTGA	2 cut(s)	322, 760
AvaI	CYCGRG	1 cut(s)	705
AvrII	CCTAGG	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	792
BamHI	GGATCC	1 cut(s)	553
BauI	CACGAG	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	769
BbvI	GCAGC	2 cut(s)	79, 442
BccI	CCATC	1 cut(s)	250
BciT130I	CCWGG	2 cut(s)	503, 870
BciVI	GTATCC	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	942
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	2 cut(s)	129, 141
BfmI	CTRYAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	481
BfuI	GTATCC	1 cut(s)	103
BglII	AGATCT	1 cut(s)	634
BisI	GCNGC	2 cut(s)	93, 431
BlnI	CCTAGG	1 cut(s)	140
BlsI	GCNGC	2 cut(s)	94, 432
Bme1390I	CCNGG	3 cut(s)	503, 870, 942
BmeT110I	CYCGRG	1 cut(s)	705
BmgT120I	GGNCC	1 cut(s)	703
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	3 cut(s)	503, 870, 942
BmrI	ACTGGG	1 cut(s)	1088
BmsI	GCATC	1 cut(s)	170
BmuI	ACTGGG	1 cut(s)	1088
BpiI	GAAGAC	1 cut(s)	32
BpmI	CTGGAG	2 cut(s)	81, 789
BpuMI	CCSGG	1 cut(s)	942
BsaHI	GRCGYC	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	140, 217
BsaWI	WCCGGW	1 cut(s)	769
Bsc4I	CCNNNNNNNGG	4 cut(s)	223, 508, 1079, 1080
Bse1I	ACTGG	4 cut(s)	98, 705, 806, 1083
Bse3DI	GCAATG	1 cut(s)	597
BseBI	CCWGG	2 cut(s)	503, 870
BseDI	CCNNGG	2 cut(s)	140, 217
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	4 cut(s)	223, 508, 1079, 1080
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	3 cut(s)	604, 831, 870
BseNI	ACTGG	4 cut(s)	98, 705, 806, 1083
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	79, 442
BshFI	GGCC	4 cut(s)	213, 704, 792, 940
BsiHKAI	GWGCWC	1 cut(s)	769
BsiHKCI	CYCGRG	1 cut(s)	705
BsiSI	CCGG	2 cut(s)	770, 941
BslFI	GGGAC	2 cut(s)	235, 371
BslI	CCNNNNNNNGG	4 cut(s)	223, 508, 1079, 1080
BsmAI	GTCTC	1 cut(s)	332
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	2 cut(s)	235, 371
BsnI	GGCC	4 cut(s)	213, 704, 792, 940
BsoBI	CYCGRG	1 cut(s)	705
Bsp1286I	GDGCHC	1 cut(s)	769
Bsp1407I	TGTACA	1 cut(s)	1095
Bsp143I	GATC	6 cut(s)	136, 322, 553, 634, 661, 785
BspACI	CCGC	2 cut(s)	5, 179
BspANI	GGCC	4 cut(s)	213, 704, 792, 940
BspCNI	CTCAG	3 cut(s)	603, 832, 871
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	1 cut(s)	555
BspPI	GGATC	4 cut(s)	131, 548, 561, 793
BsrDI	GCAATG	1 cut(s)	597
BsrGI	TGTACA	1 cut(s)	1095
BsrI	ACTGG	4 cut(s)	98, 705, 806, 1083
BssECI	CCNNGG	2 cut(s)	140, 217
BssMI	GATC	6 cut(s)	136, 322, 553, 634, 661, 785
BssNI	GRCGYC	1 cut(s)	384
BssSI	CACGAG	1 cut(s)	318
BssT1I	CCWWGG	2 cut(s)	140, 217
Bst2BI	CACGAG	1 cut(s)	318
Bst2UI	CCWGG	2 cut(s)	503, 870
Bst4CI	ACNGT	2 cut(s)	191, 1108
BstACI	GRCGYC	1 cut(s)	384
BstAUI	TGTACA	1 cut(s)	1095
BstC8I	GCNNGC	2 cut(s)	435, 687
BstDEI	CTNAG	6 cut(s)	12, 590, 840, 879, 981, 993
BstF5I	GGATG	1 cut(s)	463
BstH2I	RGCGCY	1 cut(s)	481
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	6 cut(s)	139, 325, 556, 637, 664, 788
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	6 cut(s)	136, 322, 553, 634, 661, 785
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 390
BstNI	CCWGG	2 cut(s)	503, 870
BstNSI	RCATGY	2 cut(s)	437, 1096
BstSCI	CCNGG	3 cut(s)	501, 868, 940
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	2 cut(s)	79, 442
BstV2I	GAAGAC	1 cut(s)	32
BstX2I	RGATCY	3 cut(s)	553, 634, 785
BstYI	RGATCY	3 cut(s)	553, 634, 785
BsuI	GTATCC	1 cut(s)	103
BsuRI	GGCC	4 cut(s)	213, 704, 792, 940
BtsCI	GGATG	1 cut(s)	463
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	4 cut(s)	105, 393, 828, 1076
Cac8I	GCNNGC	2 cut(s)	435, 687
CciI	TCATGA	1 cut(s)	739
CfoI	GCGC	1 cut(s)	480
Cfr13I	GGNCC	1 cut(s)	703
CseI	GACGC	1 cut(s)	373
Csp6I	GTAC	6 cut(s)	9, 265, 499, 760, 918, 1096
CviAII	CATG	4 cut(s)	434, 740, 936, 1093
CviQI	GTAC	6 cut(s)	9, 265, 499, 760, 918, 1096
DdeI	CTNAG	6 cut(s)	12, 590, 840, 879, 981, 993
DpnI	GATC	6 cut(s)	138, 324, 555, 636, 663, 787
DpnII	GATC	6 cut(s)	136, 322, 553, 634, 661, 785
DraI	TTTAAA	1 cut(s)	967
EaeI	YGGCCR	2 cut(s)	790, 938
Eco130I	CCWWGG	2 cut(s)	140, 217
Eco47III	AGCGCT	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	659
Eco88I	CYCGRG	1 cut(s)	705
EcoRI	GAATTC	1 cut(s)	949
EcoRII	CCWGG	2 cut(s)	501, 868
EcoT14I	CCWWGG	2 cut(s)	140, 217
ErhI	CCWWGG	2 cut(s)	140, 217
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	4 cut(s)	437, 743, 939, 1096
FaqI	GGGAC	2 cut(s)	235, 371
FatI	CATG	4 cut(s)	433, 739, 935, 1092
FauI	CCCGC	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	93, 431
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	2 cut(s)	93, 431
FspBI	CTAG	2 cut(s)	129, 141
GlaI	GCGC	1 cut(s)	479
GluI	GCNGC	2 cut(s)	93, 431
GsuI	CTGGAG	2 cut(s)	81, 789
HaeII	RGCGCY	1 cut(s)	481
HaeIII	GGCC	4 cut(s)	213, 704, 792, 940
HapII	CCGG	2 cut(s)	770, 941
HgaI	GACGC	1 cut(s)	373
HhaI	GCGC	1 cut(s)	480
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	4 cut(s)	437, 743, 939, 1096
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HincII	GTYRAC	1 cut(s)	1039
HindII	GTYRAC	1 cut(s)	1039
HindIII	AAGCTT	1 cut(s)	683
HpaII	CCGG	2 cut(s)	770, 941
HphI	GGTGA	2 cut(s)	322, 760
Hpy166II	GTNNAC	3 cut(s)	310, 1039, 1058
Hpy188I	TCNGA	5 cut(s)	585, 593, 639, 785, 880
Hpy188III	TCNNGA	8 cut(s)	234, 320, 418, 539, 632, 740, 898, 1022
Hpy8I	GTNNAC	3 cut(s)	310, 1039, 1058
Hpy99I	CGWCG	1 cut(s)	669
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	2 cut(s)	191, 1108
HpyCH4V	TGCA	5 cut(s)	430, 466, 548, 677, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 390
HpyF3I	CTNAG	6 cut(s)	12, 590, 840, 879, 981, 993
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	4 cut(s)	437, 743, 939, 1096
HspAI	GCGC	1 cut(s)	478
Kzo9I	GATC	6 cut(s)	136, 322, 553, 634, 661, 785
LmnI	GCTCC	3 cut(s)	100, 158, 367
Lsp1109I	GCAGC	2 cut(s)	79, 442
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	2 cut(s)	129, 141
MaeIII	GTNAC	3 cut(s)	450, 748, 1108
MalI	GATC	6 cut(s)	138, 324, 555, 636, 663, 787
MboI	GATC	6 cut(s)	136, 322, 553, 634, 661, 785
MfeI	CAATTG	1 cut(s)	117
MflI	RGATCY	3 cut(s)	553, 634, 785
MhlI	GDGCHC	1 cut(s)	769
MlsI	TGGCCA	1 cut(s)	792
MluCI	AATT	8 cut(s)	117, 173, 239, 408, 542, 774, 890, 949
MluNI	TGGCCA	1 cut(s)	792
MlyI	GAGTC	2 cut(s)	745, 796
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	9 cut(s)	97, 100, 160, 224, 373, 567, 587, 736, 1084
Mox20I	TGGCCA	1 cut(s)	792
MscI	TGGCCA	1 cut(s)	792
MseI	TTAA	3 cut(s)	848, 966, 1114
Msp20I	TGGCCA	1 cut(s)	792
MspA1I	CMGCKG	1 cut(s)	1031
MspI	CCGG	2 cut(s)	770, 941
MspR9I	CCNGG	3 cut(s)	503, 870, 942
MunI	CAATTG	1 cut(s)	117
MvaI	CCWGG	2 cut(s)	503, 870
MwoI	GCNNNNNNNGC	2 cut(s)	92, 390
NciI	CCSGG	1 cut(s)	942
NdeII	GATC	6 cut(s)	136, 322, 553, 634, 661, 785
NlaIII	CATG	4 cut(s)	437, 743, 939, 1096
NlaIV	GGNNCC	1 cut(s)	555
NmuCI	GTSAC	2 cut(s)	748, 1108
NspI	RCATGY	2 cut(s)	437, 1096
PaeI	GCATGC	1 cut(s)	437
PagI	TCATGA	1 cut(s)	739
PfeI	GAWTC	8 cut(s)	227, 358, 530, 586, 649, 875, 909, 1025
PkrI	GCNGC	2 cut(s)	94, 432
PleI	GAGTC	2 cut(s)	745, 796
PpsI	GAGTC	2 cut(s)	745, 796
Psp6I	CCWGG	2 cut(s)	501, 868
PspGI	CCWGG	2 cut(s)	501, 868
PspN4I	GGNNCC	1 cut(s)	555
PspPI	GGNCC	1 cut(s)	703
PsuI	RGATCY	3 cut(s)	553, 634, 785
PvuII	CAGCTG	1 cut(s)	1031
RsaI	GTAC	6 cut(s)	10, 266, 500, 761, 919, 1097
RsaNI	GTAC	6 cut(s)	9, 265, 499, 760, 918, 1096
SaqAI	TTAA	3 cut(s)	848, 966, 1114
SatI	GCNGC	2 cut(s)	93, 431
Sau3AI	GATC	6 cut(s)	136, 322, 553, 634, 661, 785
Sau96I	GGNCC	1 cut(s)	703
SchI	GAGTC	2 cut(s)	745, 796
ScrFI	CCNGG	3 cut(s)	503, 870, 942
SduI	GDGCHC	1 cut(s)	769
SetI	ASST	9 cut(s)	88, 94, 349, 452, 504, 687, 747, 862, 1033
SfaNI	GCATC	1 cut(s)	170
SfcI	CTRYAG	1 cut(s)	87
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	8 cut(s)	117, 173, 239, 408, 542, 774, 890, 949
SsiI	CCGC	2 cut(s)	5, 179
SspMI	CTAG	2 cut(s)	129, 141
StyD4I	CCNGG	3 cut(s)	501, 868, 940
StyI	CCWWGG	2 cut(s)	140, 217
TaaI	ACNGT	2 cut(s)	191, 1108
TaqI	TCGA	3 cut(s)	254, 631, 800
TasI	AATT	8 cut(s)	117, 173, 239, 408, 542, 774, 890, 949
TatI	WGTACW	1 cut(s)	1095
TfiI	GAWTC	8 cut(s)	227, 358, 530, 586, 649, 875, 909, 1025
Tru1I	TTAA	3 cut(s)	848, 966, 1114
Tru9I	TTAA	3 cut(s)	848, 966, 1114
TscAI	CASTG	4 cut(s)	105, 400, 828, 1083
TseFI	GTSAC	2 cut(s)	748, 1108
TseI	GCWGC	2 cut(s)	92, 430
Tsp45I	GTSAC	2 cut(s)	748, 1108
TspDTI	ATGAA	4 cut(s)	351, 617, 903, 942
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	4 cut(s)	105, 400, 828, 1083
XapI	RAATTY	5 cut(s)	239, 408, 542, 774, 949
XceI	RCATGY	2 cut(s)	437, 1096
XcmI	CCANNNNNNNNNTGG	1 cut(s)	813
XmaJI	CCTAGG	1 cut(s)	140
XspI	CTAG	2 cut(s)	129, 141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.