Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000117.1

Orthogroup ID

OG0003086

Physical Location & Seq

Genomic Coordinates Forward (+)

249391 .. 252830

Gene Structure 3440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000117.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

atggcgggtactaagaatgtgaagaagacaaagtttatctcacaaaatggggctaaatgtgttttggaaatggttgatgagaaagctgtagctactccagtggaggaggatacgacaattgtttctgctagcattgatcccagggaagcctcttttggagcatctgctacgaaattagcgggtaatcacggtttgccaaatgagtgcttcggcctccttgggacggattcttcgggagaatttgaagcctactcgatggacaagtacgagaaagtagagaagattggggaaggaacttatggcgtggtttacaaggctcgtgatcgtctcaccaatgaaaccatagctttgaagaagattcggttggagcaggaagatgagggcgtcccaagcactgccattagagaaatttctctcctgaaagaaatgcagcatgccaacattgtcaggttacaggatgttgtgcatagtgagaagcgcttgtatctggtgtttgagtacctggacttggatttgaagaagtatatggattcttctcctgaatttgcaaaggatcctcgccagataaaaattctcagaggcattgcttattgtcattcacatagagttcttcatcgagatctgaagccccagaatctactgatagatcgtcgcaccaatgcactaaagcttgcagattttggactggcccgagcgtttggtattcctgttaggacatatactcatgaggtggtgactctctggtacagagcaccggaaattttgctcggatctggccattattcgactccagttgatgtgtggtcagtgggttgtatatttgctgagatgttaaaccaacgacctttatttccaggcgattctgagattgatgaattgttcaagatatttagaatcttgggtactccaaatgaagatacatggcctggagtgaattctttgcctgattttaaatcttcctttcctaagtggctttctaaggacttggcaactttagttccaaatcttgaatcagctggtgttgacattctttctgtaagttcacactacatttctccctcctcaccagggattttcagcatgtacatctctactgtgacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072686 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

367

Amino Acids

41.01

Weight (kDa)

5.91

Isoelectric Point (pI)

32.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48750
fragaria_vesca	FvH4_1g27840 FvH4_1g27840 FvH4_1g27840
malus_domestica	MD02G1248900.v1.1 MD07G1067400.v1.1
prunus_persica	Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1
pyrus_communis	pycom02g21320
rosa_chinensis	RchiOBHm_Chr1g0333011 RchiOBHm_Chr1g0333051 RchiOBHm_Chr3g0489001
rosa_laevigata	RLG00000022900 RLG00000029629
rosa_multiflora	Rmu_co8022684.1_g000001 Rmu_sc0000117.1_g000041 Rmu_sc0000117.1_g000055 Rmu_sc0003088.1_g000001 Rmu_sc0021925.1_g000005
rosa_roxburghii	Rroxscaffold_4G00317830 Rroxscaffold_6G00393760
rosa_rugosa	Rorug01G0106600 Rorug03G0242500 Rorug03G0242500
rosa_samantha	Rh1AG129500 Rh1BG099000 Rh1CG123400 Rh1DG135300 Rh1DG135500 Rh3AG290900 Rh3BG327600 Rh3CG324900 Rh3DG323900
rosa_wichuraiana	Rw1G010280 Rw1G010330 Rw3G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 179
AclWI	GGATC	4 cut(s)	131, 548, 561, 778
AcoI	YGGCCR	1 cut(s)	775
AcsI	RAATTY	6 cut(s)	239, 408, 542, 570, 759, 934
AcuI	CTGAAG	1 cut(s)	644
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	6 cut(s)	10, 266, 500, 746, 904, 1085
AfeI	AGCGCT	1 cut(s)	479
AfiI	CCNNNNNNNGG	3 cut(s)	223, 508, 1068
AgsI	TTSAA	5 cut(s)	245, 352, 517, 883, 1010
AjnI	CCWGG	5 cut(s)	140, 501, 853, 925, 1066
AjuI	GAANNNNNNNTTGG	4 cut(s)	138, 170, 347, 379
AluBI	AGCT	5 cut(s)	86, 92, 347, 670, 1016
AluI	AGCT	5 cut(s)	86, 92, 347, 670, 1016
Alw21I	GWGCWC	1 cut(s)	754
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	4 cut(s)	131, 548, 561, 778
Ama87I	CYCGRG	1 cut(s)	690
Aor51HI	AGCGCT	1 cut(s)	479
AoxI	GGCC	4 cut(s)	211, 687, 775, 923
ApeKI	GCWGC	1 cut(s)	430
ApoI	RAATTY	6 cut(s)	239, 408, 542, 570, 759, 934
ArsI	GACNNNNNNTTYG	2 cut(s)	214, 246
AspLEI	GCGC	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	688
AsuHPI	GGTGA	3 cut(s)	322, 745, 1056
AsuNHI	GCTAGC	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	690
BalI	TGGCCA	1 cut(s)	777
BamHI	GGATCC	1 cut(s)	553
BauI	CACGAG	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	754
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	1 cut(s)	250
BciT130I	CCWGG	5 cut(s)	142, 503, 855, 927, 1068
BciVI	GTATCC	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	481
BfuI	GTATCC	1 cut(s)	103
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	1 cut(s)	431
BlsI	GCNGC	1 cut(s)	432
Bme1390I	CCNGG	5 cut(s)	142, 503, 855, 927, 1068
BmeT110I	CYCGRG	1 cut(s)	690
BmgT120I	GGNCC	1 cut(s)	688
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	5 cut(s)	142, 503, 855, 927, 1068
BmsI	GCATC	1 cut(s)	170
BmtI	GCTAGC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	32
BpmI	CTGGAG	3 cut(s)	81, 774, 948
BsaHI	GRCGYC	1 cut(s)	384
BsaJI	CCNNGG	4 cut(s)	140, 141, 217, 1067
BsaWI	WCCGGW	1 cut(s)	754
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 508, 1068
Bse1I	ACTGG	3 cut(s)	98, 690, 791
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	5 cut(s)	142, 503, 855, 927, 1068
BseDI	CCNNGG	4 cut(s)	140, 141, 217, 1067
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	3 cut(s)	223, 508, 1068
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	3 cut(s)	589, 816, 855
BseNI	ACTGG	3 cut(s)	98, 690, 791
BseRI	GAGGAG	2 cut(s)	119, 1051
BseXI	GCAGC	1 cut(s)	442
BshFI	GGCC	4 cut(s)	213, 689, 777, 925
BsiHKAI	GWGCWC	1 cut(s)	754
BsiHKCI	CYCGRG	1 cut(s)	690
BsiSI	CCGG	1 cut(s)	755
BslFI	GGGAC	2 cut(s)	235, 371
BslI	CCNNNNNNNGG	3 cut(s)	223, 508, 1068
BsmAI	GTCTC	1 cut(s)	332
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	2 cut(s)	235, 371
BsnI	GGCC	4 cut(s)	213, 689, 777, 925
BsoBI	CYCGRG	1 cut(s)	690
Bsp1286I	GDGCHC	1 cut(s)	754
Bsp1407I	TGTACA	1 cut(s)	1083
Bsp143I	GATC	6 cut(s)	136, 322, 553, 619, 646, 770
BspACI	CCGC	2 cut(s)	5, 179
BspANI	GGCC	4 cut(s)	213, 689, 777, 925
BspCNI	CTCAG	3 cut(s)	588, 817, 856
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	1 cut(s)	555
BspOI	GCTAGC	1 cut(s)	132
BspPI	GGATC	4 cut(s)	131, 548, 561, 778
BsrDI	GCAATG	1 cut(s)	582
BsrGI	TGTACA	1 cut(s)	1083
BsrI	ACTGG	3 cut(s)	98, 690, 791
BssECI	CCNNGG	4 cut(s)	140, 141, 217, 1067
BssMI	GATC	6 cut(s)	136, 322, 553, 619, 646, 770
BssNI	GRCGYC	1 cut(s)	384
BssSI	CACGAG	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	217
Bst2BI	CACGAG	1 cut(s)	318
Bst2UI	CCWGG	5 cut(s)	142, 503, 855, 927, 1068
Bst4CI	ACNGT	2 cut(s)	191, 1096
BstACI	GRCGYC	1 cut(s)	384
BstAUI	TGTACA	1 cut(s)	1083
BstC8I	GCNNGC	3 cut(s)	130, 435, 672
BstDEI	CTNAG	6 cut(s)	12, 575, 825, 864, 966, 978
BstF5I	GGATG	1 cut(s)	463
BstH2I	RGCGCY	1 cut(s)	481
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	6 cut(s)	139, 325, 556, 622, 649, 773
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	6 cut(s)	136, 322, 553, 619, 646, 770
BstMWI	GCNNNNNNNGC	1 cut(s)	390
BstNI	CCWGG	5 cut(s)	142, 503, 855, 927, 1068
BstNSI	RCATGY	2 cut(s)	437, 1084
BstSCI	CCNGG	5 cut(s)	140, 501, 853, 925, 1066
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	442
BstV2I	GAAGAC	1 cut(s)	32
BstX2I	RGATCY	3 cut(s)	553, 619, 770
BstYI	RGATCY	3 cut(s)	553, 619, 770
BsuI	GTATCC	1 cut(s)	103
BsuRI	GGCC	4 cut(s)	213, 689, 777, 925
BtsCI	GGATG	1 cut(s)	463
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	3 cut(s)	105, 393, 813
Cac8I	GCNNGC	3 cut(s)	130, 435, 672
CciI	TCATGA	1 cut(s)	724
CfoI	GCGC	1 cut(s)	480
Cfr13I	GGNCC	1 cut(s)	688
CseI	GACGC	1 cut(s)	373
Csp6I	GTAC	6 cut(s)	9, 265, 499, 745, 903, 1084
CviAII	CATG	4 cut(s)	434, 725, 921, 1081
CviQI	GTAC	6 cut(s)	9, 265, 499, 745, 903, 1084
DdeI	CTNAG	6 cut(s)	12, 575, 825, 864, 966, 978
DpnI	GATC	6 cut(s)	138, 324, 555, 621, 648, 772
DpnII	GATC	6 cut(s)	136, 322, 553, 619, 646, 770
DraI	TTTAAA	1 cut(s)	952
EaeI	YGGCCR	1 cut(s)	775
Eco130I	CCWWGG	1 cut(s)	217
Eco47III	AGCGCT	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	644
Eco88I	CYCGRG	1 cut(s)	690
EcoRI	GAATTC	1 cut(s)	934
EcoRII	CCWGG	5 cut(s)	140, 501, 853, 925, 1066
EcoT14I	CCWWGG	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	4 cut(s)	437, 728, 924, 1084
FaqI	GGGAC	2 cut(s)	235, 371
FatI	CATG	4 cut(s)	433, 724, 920, 1080
FauI	CCCGC	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	431
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	1 cut(s)	431
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	1 cut(s)	479
GluI	GCNGC	1 cut(s)	431
GsuI	CTGGAG	3 cut(s)	81, 774, 948
HaeII	RGCGCY	1 cut(s)	481
HaeIII	GGCC	4 cut(s)	213, 689, 777, 925
HapII	CCGG	1 cut(s)	755
HgaI	GACGC	1 cut(s)	373
HhaI	GCGC	1 cut(s)	480
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	4 cut(s)	437, 728, 924, 1084
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HincII	GTYRAC	1 cut(s)	1024
HindII	GTYRAC	1 cut(s)	1024
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	9 cut(s)	227, 358, 530, 634, 736, 787, 860, 894, 1010
HpaII	CCGG	1 cut(s)	755
HphI	GGTGA	3 cut(s)	322, 745, 1056
Hpy166II	GTNNAC	3 cut(s)	310, 1024, 1043
Hpy188I	TCNGA	4 cut(s)	578, 624, 770, 865
Hpy188III	TCNNGA	8 cut(s)	234, 320, 418, 539, 617, 725, 883, 1007
Hpy8I	GTNNAC	3 cut(s)	310, 1024, 1043
Hpy99I	CGWCG	1 cut(s)	654
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	2 cut(s)	191, 1096
HpyCH4V	TGCA	5 cut(s)	430, 466, 548, 662, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	390
HpyF3I	CTNAG	6 cut(s)	12, 575, 825, 864, 966, 978
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	4 cut(s)	437, 728, 924, 1084
HspAI	GCGC	1 cut(s)	478
Kzo9I	GATC	6 cut(s)	136, 322, 553, 619, 646, 770
LmnI	GCTCC	2 cut(s)	158, 367
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	3 cut(s)	450, 733, 1096
MalI	GATC	6 cut(s)	138, 324, 555, 621, 648, 772
MboI	GATC	6 cut(s)	136, 322, 553, 619, 646, 770
MfeI	CAATTG	1 cut(s)	117
MflI	RGATCY	3 cut(s)	553, 619, 770
MhlI	GDGCHC	1 cut(s)	754
MlsI	TGGCCA	1 cut(s)	777
MluCI	AATT	9 cut(s)	117, 173, 239, 408, 542, 570, 759, 875, 934
MluNI	TGGCCA	1 cut(s)	777
MlyI	GAGTC	2 cut(s)	730, 781
MmeI	TCCRAC	1 cut(s)	345
Mox20I	TGGCCA	1 cut(s)	777
MscI	TGGCCA	1 cut(s)	777
MseI	TTAA	3 cut(s)	833, 951, 1102
Msp20I	TGGCCA	1 cut(s)	777
MspA1I	CMGCKG	1 cut(s)	1016
MspI	CCGG	1 cut(s)	755
MspR9I	CCNGG	5 cut(s)	142, 503, 855, 927, 1068
MunI	CAATTG	1 cut(s)	117
MvaI	CCWGG	5 cut(s)	142, 503, 855, 927, 1068
MwoI	GCNNNNNNNGC	1 cut(s)	390
NdeII	GATC	6 cut(s)	136, 322, 553, 619, 646, 770
NheI	GCTAGC	1 cut(s)	128
NlaIII	CATG	4 cut(s)	437, 728, 924, 1084
NlaIV	GGNNCC	1 cut(s)	555
NmuCI	GTSAC	2 cut(s)	733, 1096
NspI	RCATGY	2 cut(s)	437, 1084
PaeI	GCATGC	1 cut(s)	437
PagI	TCATGA	1 cut(s)	724
PasI	CCCWGGG	1 cut(s)	141
PfeI	GAWTC	7 cut(s)	227, 358, 530, 634, 860, 894, 1010
PkrI	GCNGC	1 cut(s)	432
PleI	GAGTC	2 cut(s)	730, 781
PpsI	GAGTC	2 cut(s)	730, 781
Psp6I	CCWGG	5 cut(s)	140, 501, 853, 925, 1066
PspGI	CCWGG	5 cut(s)	140, 501, 853, 925, 1066
PspN4I	GGNNCC	1 cut(s)	555
PspPI	GGNCC	1 cut(s)	688
PsuI	RGATCY	3 cut(s)	553, 619, 770
PvuII	CAGCTG	1 cut(s)	1016
RsaI	GTAC	6 cut(s)	10, 266, 500, 746, 904, 1085
RsaNI	GTAC	6 cut(s)	9, 265, 499, 745, 903, 1084
SaqAI	TTAA	3 cut(s)	833, 951, 1102
SatI	GCNGC	1 cut(s)	431
Sau3AI	GATC	6 cut(s)	136, 322, 553, 619, 646, 770
Sau96I	GGNCC	1 cut(s)	688
SchI	GAGTC	2 cut(s)	730, 781
ScrFI	CCNGG	5 cut(s)	142, 503, 855, 927, 1068
SduI	GDGCHC	1 cut(s)	754
SetI	ASST	9 cut(s)	88, 94, 349, 452, 504, 672, 732, 847, 1018
SfaNI	GCATC	1 cut(s)	170
SfcI	CTRYAG	1 cut(s)	87
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	9 cut(s)	117, 173, 239, 408, 542, 570, 759, 875, 934
SsiI	CCGC	2 cut(s)	5, 179
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	5 cut(s)	140, 501, 853, 925, 1066
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	191, 1096
TaqI	TCGA	3 cut(s)	254, 616, 785
TasI	AATT	9 cut(s)	117, 173, 239, 408, 542, 570, 759, 875, 934
TatI	WGTACW	1 cut(s)	1083
TfiI	GAWTC	7 cut(s)	227, 358, 530, 634, 860, 894, 1010
Tru1I	TTAA	3 cut(s)	833, 951, 1102
Tru9I	TTAA	3 cut(s)	833, 951, 1102
TscAI	CASTG	3 cut(s)	105, 400, 813
TseFI	GTSAC	2 cut(s)	733, 1096
TseI	GCWGC	1 cut(s)	430
Tsp45I	GTSAC	2 cut(s)	733, 1096
TspDTI	ATGAA	4 cut(s)	351, 602, 888, 927
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	3 cut(s)	105, 400, 813
XapI	RAATTY	6 cut(s)	239, 408, 542, 570, 759, 934
XceI	RCATGY	2 cut(s)	437, 1084
XcmI	CCANNNNNNNNNTGG	1 cut(s)	798
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.