Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003086

Physical Location & Seq

Genomic Coordinates Forward (+)

22600438 .. 22605252

Gene Structure 4815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0242500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCCACTACTGCAGCTCCTGGTTCACACATGGCAGCAATTAAGCCTTGCATATCTTCTTCCCGAAGAACATACATGTCATGTACTGCCAATTTTGGTGCTAACAGTGAAGTGGCAGTTTCTAAGGGGCTTAGAAGCTCTTCCCACATCTCATCAAGGCAACCATTCTTCCCGAGCATCCAATCAGGCCCTGCGAAGTCTGTAAAGGTTATCACAAGAGCGATGTCAGCTGCAGCTGAGAACAGTCCATTGCCAGGATTGCCTATTGATTTGAGAGGAAAGAGAGCATTCATTGCTGGTGTGGCTGATGATAATGGATATGGATGGGCAATAGCAAAACAACTTGCTGCTGCTGGTGCTGAAATTCTTCTTGGTACATGGGTGCCGGCACTTAACATTTTCGAGTCCAGTTTAAGGCGTGGGAAGTTTGATGAATCACGCATATTGCCCGACGGTTCTTTGATGGAAATTACAAAAGTCTATCCATTGGATGCAGTTTTTGACAATCCTGATGATGTTCCTGAAGATATAAAATCAAACAAACGCTACTTGGGGTCCTCAAAGTGGACGGTTAAGGAGGTTGCTGAATCTGTTAAAGAGGATTTTGGCAGCATTGATATCCTAGTCCATTCCCTGGCTAATGGACCAGAGGTTGTCAAACCTCTTATGGAAACGTCAAGATATGGATATCTTGCAGCTATCTCTGCATCAAGCTACTCGTTTATTTCTTTACTCCAGCATTTTGCTCCAATAATGAACCCAGGTGGTGCGTCAATCTCTCTGACATACATTGCTTCCGAGAGGATCATTCCCGGATATGGTGGAGGTATGAGTTCAGCGAAGGCTGCTCTAGAGAGTGACACACGTGTGCTGGCTTTTGAAGCTGGGAGAAAACACAGAATCAGAGTCAACACAATATCTGCAGGCCCATTAAGAAGTCGTGCTGCAAAAGCTATTGGTTTTATCGATATGATGATTGATTACTCATCAGCCAATGCTCCCTTACCGAAAGAGTTATCTGCTGATGAGGTGGGGAACGTTGCTGCCTTCCTTGCATCACCACTAGCATCAGCAATCACCGGCAGTGTTGTATACGTCGACAATGGTCTAAATGCAATGGGTGTGGGAGTTGACAGCCCAATTTTTGAAAACCTTGAGCTTCCAAAAGAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072686 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

391

Amino Acids

41.32

Weight (kDa)

6.98

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	190 - 371	2.1e-50	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	190 - 318	5.5e-08	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48750
fragaria_vesca	FvH4_1g27840 FvH4_1g27840 FvH4_1g27840
malus_domestica	MD02G1248900.v1.1 MD07G1067400.v1.1
prunus_persica	Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1
pyrus_communis	pycom02g21320
rosa_chinensis	RchiOBHm_Chr1g0333011 RchiOBHm_Chr1g0333051 RchiOBHm_Chr3g0489001
rosa_laevigata	RLG00000022900 RLG00000029629
rosa_multiflora	Rmu_co8022684.1_g000001 Rmu_sc0000117.1_g000041 Rmu_sc0000117.1_g000055 Rmu_sc0003088.1_g000001 Rmu_sc0021925.1_g000005
rosa_roxburghii	Rroxscaffold_4G00317830 Rroxscaffold_6G00393760
rosa_rugosa	Rorug01G0106600 Rorug03G0242500 Rorug03G0242500
rosa_samantha	Rh1AG129500 Rh1BG099000 Rh1CG123400 Rh1DG135300 Rh1DG135500 Rh3AG290900 Rh3BG327600 Rh3CG324900 Rh3DG323900
rosa_wichuraiana	Rw1G010280 Rw1G010330 Rw3G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	382
AccB7I	CCANNNNNTGG	1 cut(s)	634
AccI	GTMKAC	2 cut(s)	1092, 1098
AclI	AACGTT	1 cut(s)	1038
AclWI	GGATC	1 cut(s)	812
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	543
AcvI	CACGTG	1 cut(s)	866
AfaI	GTAC	2 cut(s)	85, 376
AfiI	CCNNNNNNNGG	5 cut(s)	254, 414, 564, 634, 818
AflIII	ACRYGT	3 cut(s)	75, 863, 865
AgsI	TTSAA	2 cut(s)	881, 1148
AjnI	CCWGG	4 cut(s)	19, 253, 633, 760
AjuI	GAANNNNNNNTTGG	2 cut(s)	354, 386
AleI	CACNNNNGTG	1 cut(s)	866
AluBI	AGCT	9 cut(s)	17, 138, 230, 236, 698, 714, 884, 953, 1159
AluI	AGCT	9 cut(s)	17, 138, 230, 236, 698, 714, 884, 953, 1159
AlwI	GGATC	1 cut(s)	812
AlwNI	CAGNNNCTG	2 cut(s)	20, 191
Ama87I	CYCGRG	1 cut(s)	172
AoxI	GGCC	3 cut(s)	3, 187, 925
ApoI	RAATTY	1 cut(s)	363
Asp700I	GAANNNNTTC	2 cut(s)	139, 366
AspS9I	GGNCC	4 cut(s)	188, 555, 644, 926
AsuC2I	CCSGG	1 cut(s)	813
AsuHPI	GGTGA	2 cut(s)	1050, 1069
AvaI	CYCGRG	1 cut(s)	172
AvaII	GGWCC	2 cut(s)	555, 644
BaeI	ACNNNNGTAYC	2 cut(s)	366, 399
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	382
BbrPI	CACGTG	1 cut(s)	866
BccI	CCATC	2 cut(s)	318, 457
BciT130I	CCWGG	4 cut(s)	21, 255, 635, 762
BcnI	CCSGG	1 cut(s)	813
BfaI	CTAG	4 cut(s)	623, 851, 1064, 1174
BfmI	CTRYAG	3 cut(s)	12, 231, 921
Bme1390I	CCNGG	5 cut(s)	21, 255, 635, 762, 813
Bme18I	GGWCC	2 cut(s)	555, 644
BmeT110I	CYCGRG	1 cut(s)	172
BmgT120I	GGNCC	4 cut(s)	188, 555, 644, 926
BmiI	GGNNCC	2 cut(s)	384, 556
BmrFI	CCNGG	5 cut(s)	21, 255, 635, 762, 813
BmsI	GCATC	5 cut(s)	186, 481, 716, 1064, 1076
BoxI	GACNNNNGTC	1 cut(s)	1104
BpmI	CTGGAG	1 cut(s)	719
BpuEI	CTTGAG	1 cut(s)	1175
BpuMI	CCSGG	1 cut(s)	813
Bsa29I	ATCGAT	1 cut(s)	966
BsaAI	YACGTR	1 cut(s)	866
BsaJI	CCNNGG	2 cut(s)	633, 760
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	5 cut(s)	254, 414, 564, 634, 818
Bse118I	RCCGGY	2 cut(s)	385, 1079
Bse1I	ACTGG	1 cut(s)	408
Bse3DI	GCAATG	4 cut(s)	248, 291, 789, 1122
BseBI	CCWGG	4 cut(s)	21, 255, 635, 762
BseCI	ATCGAT	1 cut(s)	966
BseDI	CCNNGG	2 cut(s)	633, 760
BseGI	GGATG	3 cut(s)	177, 329, 496
BseLI	CCNNNNNNNGG	5 cut(s)	254, 414, 564, 634, 818
BseMI	GCAATG	4 cut(s)	248, 291, 789, 1122
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	408
BseYI	CCCAGC	1 cut(s)	884
BshFI	GGCC	3 cut(s)	5, 189, 927
BshNI	GGYRCC	1 cut(s)	382
BshVI	ATCGAT	1 cut(s)	966
BsiHKCI	CYCGRG	1 cut(s)	172
BsiSI	CCGG	3 cut(s)	386, 813, 1080
BslI	CCNNNNNNNGG	5 cut(s)	254, 414, 564, 634, 818
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	3 cut(s)	5, 189, 927
BsoBI	CYCGRG	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	804
BspANI	GGCC	3 cut(s)	5, 189, 927
BspCNI	CTCAG	1 cut(s)	229
BspDI	ATCGAT	1 cut(s)	966
BspLI	GGNNCC	2 cut(s)	384, 556
BspMAI	CTGCAG	3 cut(s)	16, 235, 925
BspPI	GGATC	1 cut(s)	812
BspQI	GCTCTTC	1 cut(s)	145
BspT107I	GGYRCC	1 cut(s)	382
BsrDI	GCAATG	4 cut(s)	248, 291, 789, 1122
BsrFI	RCCGGY	2 cut(s)	385, 1079
BsrI	ACTGG	1 cut(s)	408
BssAI	RCCGGY	2 cut(s)	385, 1079
BssECI	CCNNGG	2 cut(s)	633, 760
BssMI	GATC	1 cut(s)	804
BssNAI	GTATAC	1 cut(s)	1093
Bst1107I	GTATAC	1 cut(s)	1093
Bst2UI	CCWGG	4 cut(s)	21, 255, 635, 762
Bst4CI	ACNGT	4 cut(s)	107, 245, 455, 571
Bst6I	CTCTTC	1 cut(s)	145
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	866
BstC8I	GCNNGC	3 cut(s)	387, 873, 925
BstDEI	CTNAG	3 cut(s)	123, 131, 237
BstF5I	GGATG	3 cut(s)	177, 329, 496
BstKTI	GATC	1 cut(s)	807
BstMBI	GATC	1 cut(s)	804
BstNI	CCWGG	4 cut(s)	21, 255, 635, 762
BstNSI	RCATGY	1 cut(s)	79
BstPAI	GACNNNNGTC	1 cut(s)	1104
BstSCI	CCNGG	5 cut(s)	19, 253, 633, 760, 811
BstSFI	CTRYAG	3 cut(s)	12, 231, 921
BstZ17I	GTATAC	1 cut(s)	1093
Bsu15I	ATCGAT	1 cut(s)	966
BsuRI	GGCC	3 cut(s)	5, 189, 927
BsuTUI	ATCGAT	1 cut(s)	966
BtgZI	GCGATG	1 cut(s)	236
BtsCI	GGATG	3 cut(s)	177, 329, 496
BtsI	GCAGTG	1 cut(s)	1090
BtsIMutI	CAGTG	2 cut(s)	112, 1090
Cac8I	GCNNGC	3 cut(s)	387, 873, 925
CaiI	CAGNNNCTG	2 cut(s)	20, 191
Cfr10I	RCCGGY	2 cut(s)	385, 1079
Cfr13I	GGNCC	4 cut(s)	188, 555, 644, 926
ClaI	ATCGAT	1 cut(s)	966
CseI	GACGC	1 cut(s)	759
Csp6I	GTAC	2 cut(s)	84, 375
CspCI	CAANNNNNGTGG	2 cut(s)	1104, 1139
CviAII	CATG	4 cut(s)	31, 76, 81, 378
CviQI	GTAC	2 cut(s)	84, 375
DdeI	CTNAG	3 cut(s)	123, 131, 237
DpnI	GATC	1 cut(s)	806
DpnII	GATC	1 cut(s)	804
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Eco32I	GATATC	2 cut(s)	619, 689
Eco47I	GGWCC	2 cut(s)	555, 644
Eco57I	CTGAAG	1 cut(s)	543
Eco72I	CACGTG	1 cut(s)	866
Eco88I	CYCGRG	1 cut(s)	172
EcoO109I	RGGNCCY	2 cut(s)	188, 555
EcoRII	CCWGG	4 cut(s)	19, 253, 633, 760
EcoRV	GATATC	2 cut(s)	619, 689
FaeI	CATG	4 cut(s)	34, 79, 84, 381
FatI	CATG	4 cut(s)	30, 75, 80, 377
FblI	GTMKAC	2 cut(s)	1092, 1098
FokI	GGATG	3 cut(s)	164, 336, 503
FspBI	CTAG	4 cut(s)	623, 851, 1064, 1174
GsaI	CCCAGC	1 cut(s)	888
GsuI	CTGGAG	1 cut(s)	719
HaeIII	GGCC	3 cut(s)	5, 189, 927
HapII	CCGG	3 cut(s)	386, 813, 1080
HgaI	GACGC	1 cut(s)	759
Hin1II	CATG	4 cut(s)	34, 79, 84, 381
HincII	GTYRAC	3 cut(s)	910, 1099, 1132
HindII	GTYRAC	3 cut(s)	910, 1099, 1132
HinfI	GANTC	5 cut(s)	404, 434, 587, 900, 906
HpaII	CCGG	3 cut(s)	386, 813, 1080
HphI	GGTGA	2 cut(s)	1050, 1069
Hpy166II	GTNNAC	6 cut(s)	26, 567, 910, 1093, 1099, 1132
Hpy188I	TCNGA	3 cut(s)	783, 799, 905
Hpy188III	TCNNGA	6 cut(s)	63, 172, 509, 521, 678, 851
Hpy8I	GTNNAC	6 cut(s)	26, 567, 910, 1093, 1099, 1132
Hpy99I	CGWCG	2 cut(s)	455, 1100
HpyAV	CCTTC	2 cut(s)	835, 1057
HpyCH4III	ACNGT	4 cut(s)	107, 245, 455, 571
HpyCH4IV	ACGT	4 cut(s)	674, 865, 1038, 1095
HpyF3I	CTNAG	3 cut(s)	123, 131, 237
HpySE526I	ACGT	4 cut(s)	674, 865, 1038, 1095
Hsp92II	CATG	4 cut(s)	34, 79, 84, 381
KroI	GCCGGC	1 cut(s)	385
KroNI	GCCGGC	1 cut(s)	387
Kzo9I	GATC	1 cut(s)	804
LguI	GCTCTTC	1 cut(s)	145
LmnI	GCTCC	3 cut(s)	22, 751, 1003
LweI	GCATC	5 cut(s)	186, 481, 716, 1064, 1076
MaeI	CTAG	4 cut(s)	623, 851, 1064, 1174
MaeII	ACGT	4 cut(s)	674, 865, 1038, 1095
MaeIII	GTNAC	1 cut(s)	857
MalI	GATC	1 cut(s)	806
MboI	GATC	1 cut(s)	804
MboII	GAAGA	7 cut(s)	48, 51, 78, 132, 160, 359, 536
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	39, 91, 363, 468, 1140
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	413, 915
MnlI	CCTC	9 cut(s)	269, 568, 571, 592, 643, 672, 795, 818, 1021
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	385
MroXI	GAANNNNTTC	2 cut(s)	139, 366
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	42, 393, 413, 573, 594, 932
MslI	CAYNNNNRTG	1 cut(s)	866
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	230, 236
MspI	CCGG	3 cut(s)	386, 813, 1080
MspR9I	CCNGG	5 cut(s)	21, 255, 635, 762, 813
Mva1269I	GAATGC	1 cut(s)	287
MvaI	CCWGG	4 cut(s)	21, 255, 635, 762
NaeI	GCCGGC	1 cut(s)	387
NciI	CCSGG	1 cut(s)	813
NdeII	GATC	1 cut(s)	804
NgoMIV	GCCGGC	1 cut(s)	385
NlaIII	CATG	4 cut(s)	34, 79, 84, 381
NlaIV	GGNNCC	2 cut(s)	384, 556
NmuCI	GTSAC	1 cut(s)	857
NspI	RCATGY	1 cut(s)	79
OliI	CACNNNNGTG	1 cut(s)	866
PciI	ACATGT	1 cut(s)	75
PciSI	GCTCTTC	1 cut(s)	145
PctI	GAATGC	1 cut(s)	287
PdiI	GCCGGC	1 cut(s)	387
PdmI	GAANNNNTTC	2 cut(s)	139, 366
PfeI	GAWTC	3 cut(s)	434, 587, 900
PflMI	CCANNNNNTGG	1 cut(s)	634
PfoI	TCCNGGA	1 cut(s)	811
PleI	GAGTC	2 cut(s)	412, 914
PmaCI	CACGTG	1 cut(s)	866
PmlI	CACGTG	1 cut(s)	866
PpsI	GAGTC	2 cut(s)	412, 914
Ppu21I	YACGTR	1 cut(s)	866
PpuMI	RGGWCCY	1 cut(s)	555
PscI	ACATGT	1 cut(s)	75
PshAI	GACNNNNGTC	1 cut(s)	1104
Psp1406I	AACGTT	1 cut(s)	1038
Psp5II	RGGWCCY	1 cut(s)	555
Psp6I	CCWGG	4 cut(s)	19, 253, 633, 760
PspCI	CACGTG	1 cut(s)	866
PspFI	CCCAGC	1 cut(s)	884
PspGI	CCWGG	4 cut(s)	19, 253, 633, 760
PspN4I	GGNNCC	2 cut(s)	384, 556
PspPI	GGNCC	4 cut(s)	188, 555, 644, 926
PspPPI	RGGWCCY	1 cut(s)	555
PstI	CTGCAG	3 cut(s)	16, 235, 925
PstNI	CAGNNNCTG	2 cut(s)	20, 191
PvuII	CAGCTG	2 cut(s)	230, 236
RsaI	GTAC	2 cut(s)	85, 376
RsaNI	GTAC	2 cut(s)	84, 375
RseI	CAYNNNNRTG	1 cut(s)	866
SalI	GTCGAC	1 cut(s)	1097
SapI	GCTCTTC	1 cut(s)	145
SaqAI	TTAA	6 cut(s)	42, 393, 413, 573, 594, 932
Sau3AI	GATC	1 cut(s)	804
Sau96I	GGNCC	4 cut(s)	188, 555, 644, 926
SchI	GAGTC	2 cut(s)	413, 915
ScrFI	CCNGG	5 cut(s)	21, 255, 635, 762, 813
SfaNI	GCATC	5 cut(s)	186, 481, 716, 1064, 1076
SfcI	CTRYAG	3 cut(s)	12, 231, 921
SinI	GGWCC	2 cut(s)	555, 644
SmiMI	CAYNNNNRTG	1 cut(s)	866
SmlI	CTYRAG	1 cut(s)	1154
SmoI	CTYRAG	1 cut(s)	1154
Sse9I	AATT	5 cut(s)	39, 91, 363, 468, 1140
SspMI	CTAG	4 cut(s)	623, 851, 1064, 1174
StyD4I	CCNGG	5 cut(s)	19, 253, 633, 760, 811
TaaI	ACNGT	4 cut(s)	107, 245, 455, 571
TaiI	ACGT	4 cut(s)	677, 868, 1041, 1098
TaqI	TCGA	3 cut(s)	402, 966, 1098
TasI	AATT	5 cut(s)	39, 91, 363, 468, 1140
TatI	WGTACW	1 cut(s)	83
TfiI	GAWTC	3 cut(s)	434, 587, 900
Tru1I	TTAA	6 cut(s)	42, 393, 413, 573, 594, 932
Tru9I	TTAA	6 cut(s)	42, 393, 413, 573, 594, 932
TscAI	CASTG	2 cut(s)	112, 1090
TseFI	GTSAC	1 cut(s)	857
Tsp45I	GTSAC	1 cut(s)	857
TspDTI	ATGAA	3 cut(s)	280, 447, 770
TspRI	CASTG	2 cut(s)	112, 1090
Van91I	CCANNNNNTGG	1 cut(s)	634
VpaK11BI	GGWCC	2 cut(s)	555, 644
XapI	RAATTY	1 cut(s)	363
XbaI	TCTAGA	1 cut(s)	850
XceI	RCATGY	1 cut(s)	79
XmiI	GTMKAC	2 cut(s)	1092, 1098
XmnI	GAANNNNTTC	2 cut(s)	139, 366
XspI	CTAG	4 cut(s)	623, 851, 1064, 1174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.