Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003086

Physical Location & Seq

Genomic Coordinates Reverse (-)

41533406 .. 41537453

Gene Structure 4048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029629

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGTTGATGAGAAAGCTGTAGCTGGTTCAGCACAGGAGGATACGACAATTGTTTATGCTAGCATTGATCCTAGGGAAGCCTCTTTTGGGACGGATTCTTGGGGAGAATTTGAAGCCTACTCGATGGACAAGTACGAGAAAGTAGAGAAGATTGGGGAAGGAACTTATGGCGTGGTTTACAAGGCTCGTGATCGTCTCACCAATGAAACCATAGCTTTGAAGAAGATTCGGTTGGAGCAGGAAGATGAAGGCGTCCCAAGCACTGCCATTAGAGAAATTTCTCTCTTGAAAGAAATGCAGCATGCCAACATTGTCAGGTTACAGGATGTTGTGCATAGTGAGAAGCGCTTGTATCTGGTGTTTGAGTACCTGGACTTGGATTTGAAGAAGTATATGGATTCCTCTCCTGAATTTGCAAAGGATCCTCGCCAGATAAAAATGTTCCTTTATCAGATTCTCAGAGGCATTGCATATTGTCATTCACATAGAGTTCTTCATCGAGATCTGAAGCCCCAGAATCTACTGATAGATCGTCGCACCAATGCACTAAAGCTTGCGGATTTTGGACTGGCCCGAGCGTTTGGGATTCCTGTTAGGACATATACTCATGAGGTGGTGACTCTCTGGTACAGAGCACCGGAAATTTTGCTCGGATCTCGCCATTATTCAACTCCAGTTGATGTGTGGTCAGTGGGTTGTATATTTGCTGAGATGTTAAACCAACGGCCTTTATTTCCTGGCGATTCTGAGATTGATGAATTGTTCAAGATATTTAGAATCTTGGGTACTCCAAATGAAGATACATGGCCTGGAGTGAATTCTTTGCCTGATTTTAAATCTTCCTTTCCTAAGTGGCTTTCTAAGGACTTGGCAACTTTAGTTCCAAATCTTGAATCAGCTGGTGTTGACATTCTTTCTAAAATGCTCTGCTTGGATCCGAGCAAAAGGATTACGGCAAGGGGTGCTCTTGAGCATGAATACTTCAAAGATATTCCATTAGTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072686 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

336

Amino Acids

38.33

Weight (kDa)

5.71

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	45 - 328	1.9e-79	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	47 - 240	8.6e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48750
fragaria_vesca	FvH4_1g27840 FvH4_1g27840 FvH4_1g27840
malus_domestica	MD02G1248900.v1.1 MD07G1067400.v1.1
prunus_persica	Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1
pyrus_communis	pycom02g21320
rosa_chinensis	RchiOBHm_Chr1g0333011 RchiOBHm_Chr1g0333051 RchiOBHm_Chr3g0489001
rosa_laevigata	RLG00000022900 RLG00000029629
rosa_multiflora	Rmu_co8022684.1_g000001 Rmu_sc0000117.1_g000041 Rmu_sc0000117.1_g000055 Rmu_sc0003088.1_g000001 Rmu_sc0021925.1_g000005
rosa_roxburghii	Rroxscaffold_4G00317830 Rroxscaffold_6G00393760
rosa_rugosa	Rorug01G0106600 Rorug03G0242500 Rorug03G0242500
rosa_samantha	Rh1AG129500 Rh1BG099000 Rh1CG123400 Rh1DG135300 Rh1DG135500 Rh3AG290900 Rh3BG327600 Rh3CG324900 Rh3DG323900
rosa_wichuraiana	Rw1G010280 Rw1G010330 Rw3G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	557
AclWI	GGATC	6 cut(s)	62, 416, 429, 661, 929, 942
AcsI	RAATTY	5 cut(s)	107, 276, 410, 642, 817
AcuI	CTGAAG	1 cut(s)	527
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	4 cut(s)	134, 368, 629, 787
AfeI	AGCGCT	1 cut(s)	347
AfiI	CCNNNNNNNGG	2 cut(s)	87, 376
AgsI	TTSAA	8 cut(s)	113, 220, 289, 385, 669, 766, 893, 985
AjnI	CCWGG	3 cut(s)	369, 736, 808
AjuI	GAANNNNNNNTTGG	4 cut(s)	69, 101, 215, 247
AluBI	AGCT	5 cut(s)	17, 23, 215, 553, 899
AluI	AGCT	5 cut(s)	17, 23, 215, 553, 899
Alw21I	GWGCWC	2 cut(s)	637, 967
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	6 cut(s)	62, 416, 429, 661, 929, 942
Ama87I	CYCGRG	1 cut(s)	573
Aor51HI	AGCGCT	1 cut(s)	347
AoxI	GGCC	3 cut(s)	570, 725, 806
ApeKI	GCWGC	1 cut(s)	298
ApoI	RAATTY	5 cut(s)	107, 276, 410, 642, 817
AspA2I	CCTAGG	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	571
AsuHPI	GGTGA	2 cut(s)	190, 628
AsuNHI	GCTAGC	1 cut(s)	59
AvaI	CYCGRG	1 cut(s)	573
AvrII	CCTAGG	1 cut(s)	71
BamHI	GGATCC	2 cut(s)	421, 934
BauI	CACGAG	1 cut(s)	186
Bbv12I	GWGCWC	2 cut(s)	637, 967
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	1 cut(s)	118
BceAI	ACGGC	2 cut(s)	740, 969
BciT130I	CCWGG	3 cut(s)	371, 738, 810
BciVI	GTATCC	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	2 cut(s)	60, 72
BfmI	CTRYAG	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	349
BfuI	GTATCC	1 cut(s)	34
BglII	AGATCT	1 cut(s)	502
BisI	GCNGC	1 cut(s)	299
BlnI	CCTAGG	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	300
Bme1390I	CCNGG	3 cut(s)	371, 738, 810
BmeT110I	CYCGRG	1 cut(s)	573
BmgT120I	GGNCC	1 cut(s)	571
BmiI	GGNNCC	2 cut(s)	423, 936
BmrFI	CCNGG	3 cut(s)	371, 738, 810
BmtI	GCTAGC	1 cut(s)	63
BpmI	CTGGAG	2 cut(s)	657, 831
BpuEI	CTTGAG	1 cut(s)	989
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	637
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 376
Bse1I	ACTGG	2 cut(s)	573, 674
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	3 cut(s)	371, 738, 810
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	2 cut(s)	87, 376
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	3 cut(s)	472, 699, 738
BseNI	ACTGG	2 cut(s)	573, 674
BseXI	GCAGC	1 cut(s)	310
BshFI	GGCC	3 cut(s)	572, 727, 808
BsiHKAI	GWGCWC	2 cut(s)	637, 967
BsiHKCI	CYCGRG	1 cut(s)	573
BsiSI	CCGG	1 cut(s)	638
BslFI	GGGAC	2 cut(s)	103, 239
BslI	CCNNNNNNNGG	2 cut(s)	87, 376
BsmAI	GTCTC	1 cut(s)	200
BsmBI	CGTCTC	1 cut(s)	200
BsmFI	GGGAC	2 cut(s)	103, 239
BsnI	GGCC	3 cut(s)	572, 727, 808
BsoBI	CYCGRG	1 cut(s)	573
Bsp1286I	GDGCHC	2 cut(s)	637, 967
Bsp143I	GATC	7 cut(s)	67, 190, 421, 502, 529, 653, 934
BspACI	CCGC	1 cut(s)	557
BspANI	GGCC	3 cut(s)	572, 727, 808
BspCNI	CTCAG	3 cut(s)	471, 700, 739
BspHI	TCATGA	1 cut(s)	607
BspLI	GGNNCC	2 cut(s)	423, 936
BspOI	GCTAGC	1 cut(s)	63
BspPI	GGATC	6 cut(s)	62, 416, 429, 661, 929, 942
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	573, 674
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	7 cut(s)	67, 190, 421, 502, 529, 653, 934
BssNI	GRCGYC	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	3 cut(s)	371, 738, 810
BstACI	GRCGYC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	962
BstC8I	GCNNGC	3 cut(s)	61, 303, 555
BstDEI	CTNAG	5 cut(s)	458, 708, 747, 849, 861
BstF5I	GGATG	1 cut(s)	331
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	7 cut(s)	70, 193, 424, 505, 532, 656, 937
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	7 cut(s)	67, 190, 421, 502, 529, 653, 934
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 258, 962
BstNI	CCWGG	3 cut(s)	371, 738, 810
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	3 cut(s)	369, 736, 808
BstSFI	CTRYAG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	310
BstX2I	RGATCY	4 cut(s)	421, 502, 653, 934
BstYI	RGATCY	4 cut(s)	421, 502, 653, 934
BsuI	GTATCC	1 cut(s)	34
BsuRI	GGCC	3 cut(s)	572, 727, 808
BtsCI	GGATG	1 cut(s)	331
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	261, 696
Cac8I	GCNNGC	3 cut(s)	61, 303, 555
CciI	TCATGA	1 cut(s)	607
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	571
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	4 cut(s)	133, 367, 628, 786
CviAII	CATG	4 cut(s)	302, 608, 804, 974
CviQI	GTAC	4 cut(s)	133, 367, 628, 786
DdeI	CTNAG	5 cut(s)	458, 708, 747, 849, 861
DpnI	GATC	7 cut(s)	69, 192, 423, 504, 531, 655, 936
DpnII	GATC	7 cut(s)	67, 190, 421, 502, 529, 653, 934
DraI	TTTAAA	1 cut(s)	835
Eco130I	CCWWGG	1 cut(s)	71
Eco47III	AGCGCT	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	527
Eco88I	CYCGRG	1 cut(s)	573
EcoRI	GAATTC	1 cut(s)	817
EcoRII	CCWGG	3 cut(s)	369, 736, 808
EcoT14I	CCWWGG	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	71
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	4 cut(s)	305, 611, 807, 977
FaqI	GGGAC	2 cut(s)	103, 239
FatI	CATG	4 cut(s)	301, 607, 803, 973
Fnu4HI	GCNGC	1 cut(s)	299
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	1 cut(s)	299
FspBI	CTAG	2 cut(s)	60, 72
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	1 cut(s)	299
GsuI	CTGGAG	2 cut(s)	657, 831
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	3 cut(s)	572, 727, 808
HapII	CCGG	1 cut(s)	638
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	1 cut(s)	348
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	4 cut(s)	305, 611, 807, 977
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HincII	GTYRAC	1 cut(s)	907
HindII	GTYRAC	1 cut(s)	907
HindIII	AAGCTT	1 cut(s)	551
HpaII	CCGG	1 cut(s)	638
HphI	GGTGA	2 cut(s)	190, 628
Hpy166II	GTNNAC	2 cut(s)	178, 907
Hpy188I	TCNGA	6 cut(s)	453, 461, 507, 653, 748, 939
Hpy188III	TCNNGA	8 cut(s)	188, 286, 407, 500, 608, 766, 890, 968
Hpy8I	GTNNAC	2 cut(s)	178, 907
Hpy99I	CGWCG	1 cut(s)	537
HpyAV	CCTTC	2 cut(s)	152, 242
HpyCH4V	TGCA	5 cut(s)	298, 334, 416, 470, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 258, 962
HpyF3I	CTNAG	5 cut(s)	458, 708, 747, 849, 861
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	305, 611, 807, 977
HspAI	GCGC	1 cut(s)	346
Kzo9I	GATC	7 cut(s)	67, 190, 421, 502, 529, 653, 934
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	60, 72
MaeIII	GTNAC	2 cut(s)	318, 616
MalI	GATC	7 cut(s)	69, 192, 423, 504, 531, 655, 936
MboI	GATC	7 cut(s)	67, 190, 421, 502, 529, 653, 934
MboII	GAAGA	8 cut(s)	160, 232, 235, 254, 397, 485, 809, 831
MfeI	CAATTG	1 cut(s)	48
MflI	RGATCY	4 cut(s)	421, 502, 653, 934
MhlI	GDGCHC	2 cut(s)	637, 967
MluCI	AATT	7 cut(s)	48, 107, 276, 410, 642, 758, 817
MlyI	GAGTC	1 cut(s)	613
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	6 cut(s)	31, 91, 412, 435, 455, 604
MseI	TTAA	2 cut(s)	716, 834
MspA1I	CMGCKG	1 cut(s)	899
MspI	CCGG	1 cut(s)	638
MspR9I	CCNGG	3 cut(s)	371, 738, 810
MunI	CAATTG	1 cut(s)	48
MvaI	CCWGG	3 cut(s)	371, 738, 810
MwoI	GCNNNNNNNGC	3 cut(s)	29, 258, 962
NdeII	GATC	7 cut(s)	67, 190, 421, 502, 529, 653, 934
NheI	GCTAGC	1 cut(s)	59
NlaIII	CATG	4 cut(s)	305, 611, 807, 977
NlaIV	GGNNCC	2 cut(s)	423, 936
NmuCI	GTSAC	1 cut(s)	616
NspI	RCATGY	1 cut(s)	305
PaeI	GCATGC	1 cut(s)	305
PagI	TCATGA	1 cut(s)	607
PfeI	GAWTC	9 cut(s)	95, 226, 398, 454, 517, 586, 743, 777, 893
PkrI	GCNGC	1 cut(s)	300
PleI	GAGTC	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	613
Psp6I	CCWGG	3 cut(s)	369, 736, 808
PspGI	CCWGG	3 cut(s)	369, 736, 808
PspN4I	GGNNCC	2 cut(s)	423, 936
PspPI	GGNCC	1 cut(s)	571
PsuI	RGATCY	4 cut(s)	421, 502, 653, 934
PvuII	CAGCTG	1 cut(s)	899
RsaI	GTAC	4 cut(s)	134, 368, 629, 787
RsaNI	GTAC	4 cut(s)	133, 367, 628, 786
SaqAI	TTAA	2 cut(s)	716, 834
SatI	GCNGC	1 cut(s)	299
Sau3AI	GATC	7 cut(s)	67, 190, 421, 502, 529, 653, 934
Sau96I	GGNCC	1 cut(s)	571
SchI	GAGTC	1 cut(s)	613
ScrFI	CCNGG	3 cut(s)	371, 738, 810
SduI	GDGCHC	2 cut(s)	637, 967
SetI	ASST	8 cut(s)	19, 25, 217, 320, 372, 555, 615, 901
SfcI	CTRYAG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	968
SmoI	CTYRAG	1 cut(s)	968
SphI	GCATGC	1 cut(s)	305
Sse9I	AATT	7 cut(s)	48, 107, 276, 410, 642, 758, 817
SsiI	CCGC	1 cut(s)	557
SspMI	CTAG	2 cut(s)	60, 72
StyD4I	CCNGG	3 cut(s)	369, 736, 808
StyI	CCWWGG	1 cut(s)	71
TaqI	TCGA	2 cut(s)	122, 499
TasI	AATT	7 cut(s)	48, 107, 276, 410, 642, 758, 817
TfiI	GAWTC	9 cut(s)	95, 226, 398, 454, 517, 586, 743, 777, 893
Tru1I	TTAA	2 cut(s)	716, 834
Tru9I	TTAA	2 cut(s)	716, 834
TscAI	CASTG	2 cut(s)	268, 696
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	616
TspDTI	ATGAA	6 cut(s)	219, 261, 485, 771, 810, 990
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	2 cut(s)	268, 696
XapI	RAATTY	5 cut(s)	107, 276, 410, 642, 817
XceI	RCATGY	1 cut(s)	305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	681
XmaJI	CCTAGG	1 cut(s)	71
XspI	CTAG	2 cut(s)	60, 72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.