Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8022684.1

Orthogroup ID

OG0003086

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 330

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8022684.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 194 bp

atggaccagtacgagaaagttgagaagatcggcgaagggacttacggagtggtttacaaggctcgtgatcgtgttacgaatgagactatagctctcaagaagattcggttggagcaggaagatgagggagtgcctagcaccgccattagagagatttctctactcaaagaaatgcagcacggcaacattgtcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072686 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

64

Amino Acids

7.32

Weight (kDa)

5.33

Isoelectric Point (pI)

10.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48750
fragaria_vesca	FvH4_1g27840 FvH4_1g27840 FvH4_1g27840
malus_domestica	MD02G1248900.v1.1 MD07G1067400.v1.1
prunus_persica	Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1 Prupe.2G084600_v2.0.a1
pyrus_communis	pycom02g21320
rosa_chinensis	RchiOBHm_Chr1g0333011 RchiOBHm_Chr1g0333051 RchiOBHm_Chr3g0489001
rosa_laevigata	RLG00000022900 RLG00000029629
rosa_multiflora	Rmu_co8022684.1_g000001 Rmu_sc0000117.1_g000041 Rmu_sc0000117.1_g000055 Rmu_sc0003088.1_g000001 Rmu_sc0021925.1_g000005
rosa_roxburghii	Rroxscaffold_4G00317830 Rroxscaffold_6G00393760
rosa_rugosa	Rorug01G0106600 Rorug03G0242500 Rorug03G0242500
rosa_samantha	Rh1AG129500 Rh1BG099000 Rh1CG123400 Rh1DG135300 Rh1DG135500 Rh3AG290900 Rh3BG327600 Rh3CG324900 Rh3DG323900
rosa_wichuraiana	Rw1G010280 Rw1G010330 Rw3G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	141
AfaI	GTAC	1 cut(s)	11
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	87
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BpuEI	CTTGAG	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	7
BseNI	ACTGG	1 cut(s)	7
BseXI	GCAGC	1 cut(s)	187
BslFI	GGGAC	1 cut(s)	52
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	52
Bsp143I	GATC	2 cut(s)	27, 67
BspACI	CCGC	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	7
BssMI	GATC	2 cut(s)	27, 67
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
BstKTI	GATC	2 cut(s)	30, 70
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	27, 67
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	10
CviJI	RGCY	2 cut(s)	62, 92
CviKI_1	RGCY	2 cut(s)	62, 92
CviQI	GTAC	1 cut(s)	10
DpnI	GATC	2 cut(s)	29, 69
DpnII	GATC	2 cut(s)	27, 67
Eco47I	GGWCC	1 cut(s)	4
FaiI	YATR	1 cut(s)	89
FaqI	GGGAC	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	176
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	1 cut(s)	176
HinfI	GANTC	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188III	TCNNGA	2 cut(s)	65, 97
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	27, 67
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	2 cut(s)	20, 101
Lsp1109I	GCAGC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	29, 69
MboI	GATC	2 cut(s)	27, 67
MboII	GAAGA	3 cut(s)	37, 112, 131
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	1 cut(s)	118
NdeII	GATC	2 cut(s)	27, 67
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	2 cut(s)	27, 67
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	87
SgeI	CNNG	9 cut(s)	19, 25, 70, 75, 77, 83, 109, 128, 147
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	175
TspGWI	ACGGA	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.