Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007293

Physical Location & Seq

Genomic Coordinates Forward (+)

18747954 .. 18749674

Gene Structure 1721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G50520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGAGGAATCAAGATTCGATTCTGAAGATGTTGATTATGCTGAGATTGTTGTTGTTCGTCATGGTGAAACATCTTGGAATGCCGAGAGAAAAATCCAGGGTCATTTGGATGTTGAGTTAAATGATGCAGGAAGACAACAAGCACAAAGAGTTGCAGAGCGGTTATCGAAGGAGCAGAAGATATCTCATGTATACTCTTCTGACTTGAAGAGAGCCTTTGAGACTGCTCAGATCATTGCTGCTAAATGCGGCAAGCTTGAGGTGCTTACCGATCGTGATTTGCGGGAAAGACATTTAGGAGATATGCAAGGGCTTGTGTATCAAGAAGCTTCGAAAATTCGCCCGGAAGCTTACAAGGCTTTTTCATCTAACCGCACAGACGTTGATATTCCAGGTGGAGGAGAAAGTCTTGACAAACTTTACGATAGATGTACAACTGCATTACAGAGAATCGGCGACAAACATAAAGGTGAAAGGATAGTAGTAGTGACTCATGGAGGTGTGATCCGATCTCTCTACGAAAGAGCTCGTCCAAGTGCAAGAAAAGTTGAAAAGATACTCAATACATCGGTCAATGTGTTCCGTTTATTCGACGGAGACAAATGGACCATCCAAGTTTGGGGTGATGTGAGTCATCTGGAGGAAACCGGCTTCTTACAATCAGGTTTTGGTGGTGATAGAACCTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

230

Amino Acids

25.98

Weight (kDa)

6.19

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	16 - 209	4.8e-59	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50520
fragaria_vesca	FvH4_1g15610 FvH4_1g15610 FvH4_1g15610 FvH4_1g15610
malus_domestica	MD02G1168200.v1.1 MD15G1280300.v1.1 MD15G1280400.v1.1 MD15G1280500.v1.1
prunus_persica	Prupe.7G136800_v2.0.a1 Prupe.7G136800_v2.0.a1 Prupe.7G136900_v2.0.a1
pyrus_communis	pycom15g24320 pycom15g24330
rosa_chinensis	RchiOBHm_Chr2g0104951
rosa_laevigata	RLG00000017378
rosa_multiflora	Rmu_sc0001247.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138630
rosa_rugosa	Rorug02G0123900 Rorug02G0124000
rosa_samantha	Rh2AG174800 Rh2BG182600 Rh2CG179300 Rh2DG181200
rosa_wichuraiana	Rw2G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	4 cut(s)	160, 249, 283, 373
AclWI	GGATC	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	1 cut(s)	433
AfiI	CCNNNNNNNGG	2 cut(s)	398, 619
AgsI	TTSAA	2 cut(s)	208, 551
AjnI	CCWGG	2 cut(s)	96, 391
AluBI	AGCT	4 cut(s)	256, 329, 350, 527
AluI	AGCT	4 cut(s)	256, 329, 350, 527
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	2 cut(s)	215, 591
AlwI	GGATC	1 cut(s)	499
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	606
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	4 cut(s)	77, 482, 635, 686
AsuII	TTCGAA	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	606
BanII	GRGCYC	1 cut(s)	529
BbsI	GAAGAC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	529
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	1 cut(s)	617
BciT130I	CCWGG	2 cut(s)	98, 393
BcnI	CCSGG	1 cut(s)	344
BcoDI	GTCTC	2 cut(s)	215, 591
BisI	GCNGC	2 cut(s)	240, 250
BlsI	GCNGC	2 cut(s)	241, 251
Bme1390I	CCNGG	3 cut(s)	98, 344, 393
Bme18I	GGWCC	1 cut(s)	606
BmgT120I	GGNCC	1 cut(s)	606
BmrFI	CCNGG	3 cut(s)	98, 344, 393
BmsI	GCATC	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	659
Bpu14I	TTCGAA	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	2 cut(s)	398, 619
Bse118I	RCCGGY	1 cut(s)	647
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	98, 393
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	2 cut(s)	115, 609
BseLI	CCNNNNNNNGG	2 cut(s)	398, 619
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	2 cut(s)	33, 242
BseRI	GAGGAG	1 cut(s)	414
BseXI	GCAGC	1 cut(s)	226
Bsh1285I	CGRYCG	1 cut(s)	274
BsiEI	CGRYCG	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	529
BsiSI	CCGG	2 cut(s)	344, 648
BslI	CCNNNNNNNGG	2 cut(s)	398, 619
BsmAI	GTCTC	2 cut(s)	215, 591
BsmI	GAATGC	1 cut(s)	85
Bsp119I	TTCGAA	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp1407I	TGTACA	1 cut(s)	431
Bsp143I	GATC	4 cut(s)	231, 271, 504, 509
BspACI	CCGC	4 cut(s)	160, 249, 283, 373
BspCNI	CTCAG	2 cut(s)	34, 241
BspPI	GGATC	1 cut(s)	499
BspT104I	TTCGAA	1 cut(s)	332
BsrBI	CCGCTC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	234
BsrFI	RCCGGY	1 cut(s)	647
BsrGI	TGTACA	1 cut(s)	431
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	4 cut(s)	231, 271, 504, 509
BssNAI	GTATAC	1 cut(s)	193
Bst1107I	GTATAC	1 cut(s)	193
Bst2UI	CCWGG	2 cut(s)	98, 393
Bst6I	CTCTTC	2 cut(s)	202, 203
BstAUI	TGTACA	1 cut(s)	431
BstBI	TTCGAA	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	42, 228
BstF5I	GGATG	2 cut(s)	115, 609
BstKTI	GATC	4 cut(s)	234, 274, 507, 512
BstMAI	GTCTC	2 cut(s)	215, 591
BstMBI	GATC	4 cut(s)	231, 271, 504, 509
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 356
BstNI	CCWGG	2 cut(s)	98, 393
BstSCI	CCNGG	3 cut(s)	96, 342, 391
BstV1I	GCAGC	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	139
BstZ17I	GTATAC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	115, 609
Cac8I	GCNNGC	1 cut(s)	254
Cfr10I	RCCGGY	1 cut(s)	647
Cfr13I	GGNCC	1 cut(s)	606
Csp6I	GTAC	1 cut(s)	432
CviAII	CATG	3 cut(s)	62, 188, 494
CviJI	RGCY	8 cut(s)	215, 256, 313, 329, 350, 359, 527, 651
CviKI_1	RGCY	8 cut(s)	215, 256, 313, 329, 350, 359, 527, 651
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	2 cut(s)	42, 228
DpnI	GATC	4 cut(s)	233, 273, 506, 511
DpnII	GATC	4 cut(s)	231, 271, 504, 509
Eam1104I	CTCTTC	2 cut(s)	202, 203
EarI	CTCTTC	2 cut(s)	202, 203
Ecl136II	GAGCTC	1 cut(s)	527
Eco24I	GRGCYC	1 cut(s)	529
Eco32I	GATATC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	606
Eco53kI	GAGCTC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	527
EcoRII	CCWGG	2 cut(s)	96, 391
EcoRV	GATATC	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	529
FaeI	CATG	3 cut(s)	65, 191, 497
FaiI	YATR	7 cut(s)	39, 63, 189, 193, 305, 465, 495
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FatI	CATG	3 cut(s)	61, 187, 493
FauI	CCCGC	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	240, 250
FokI	GGATG	2 cut(s)	122, 596
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	2 cut(s)	240, 250
GluI	GCNGC	2 cut(s)	240, 250
GsuI	CTGGAG	1 cut(s)	659
HapII	CCGG	2 cut(s)	344, 648
Hin1II	CATG	3 cut(s)	65, 191, 497
HindIII	AAGCTT	3 cut(s)	254, 327, 348
HinfI	GANTC	6 cut(s)	8, 15, 20, 450, 490, 631
HpaII	CCGG	2 cut(s)	344, 648
HphI	GGTGA	4 cut(s)	77, 482, 635, 686
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	4 cut(s)	25, 202, 231, 509
Hpy188III	TCNNGA	5 cut(s)	12, 275, 323, 410, 638
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	1 cut(s)	596
HpyAV	CCTTC	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	5 cut(s)	128, 155, 307, 440, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 356
HpyF3I	CTNAG	2 cut(s)	42, 228
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	3 cut(s)	65, 191, 497
Kzo9I	GATC	4 cut(s)	231, 271, 504, 509
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	1 cut(s)	115
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	4 cut(s)	233, 273, 506, 511
MbiI	CCGCTC	1 cut(s)	160
MboI	GATC	4 cut(s)	231, 271, 504, 509
MboII	GAAGA	5 cut(s)	38, 144, 189, 190, 220
MhlI	GDGCHC	1 cut(s)	529
MluCI	AATT	1 cut(s)	336
MlyI	GAGTC	2 cut(s)	484, 640
MnlI	CCTC	4 cut(s)	253, 392, 491, 634
MseI	TTAA	1 cut(s)	119
MslI	CAYNNNNRTG	3 cut(s)	108, 468, 498
MspI	CCGG	2 cut(s)	344, 648
MspR9I	CCNGG	3 cut(s)	98, 344, 393
Mva1269I	GAATGC	1 cut(s)	85
MvaI	CCWGG	2 cut(s)	98, 393
MwoI	GCNNNNNNNGC	2 cut(s)	262, 356
NciI	CCSGG	1 cut(s)	344
NdeII	GATC	4 cut(s)	231, 271, 504, 509
NlaIII	CATG	3 cut(s)	65, 191, 497
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	487
NspV	TTCGAA	1 cut(s)	332
PctI	GAATGC	1 cut(s)	85
PfeI	GAWTC	4 cut(s)	8, 15, 20, 450
PkrI	GCNGC	2 cut(s)	241, 251
Ple19I	CGATCG	1 cut(s)	274
PleI	GAGTC	2 cut(s)	484, 639
PpsI	GAGTC	2 cut(s)	484, 639
Psp124BI	GAGCTC	1 cut(s)	529
Psp6I	CCWGG	2 cut(s)	96, 391
PspGI	CCWGG	2 cut(s)	96, 391
PspPI	GGNCC	1 cut(s)	606
PvuI	CGATCG	1 cut(s)	274
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
RseI	CAYNNNNRTG	3 cut(s)	108, 468, 498
SacI	GAGCTC	1 cut(s)	529
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	2 cut(s)	240, 250
Sau3AI	GATC	4 cut(s)	231, 271, 504, 509
Sau96I	GGNCC	1 cut(s)	606
SchI	GAGTC	2 cut(s)	484, 640
ScrFI	CCNGG	3 cut(s)	98, 344, 393
SduI	GDGCHC	1 cut(s)	529
SfaNI	GCATC	1 cut(s)	115
SfuI	TTCGAA	1 cut(s)	332
SinI	GGWCC	1 cut(s)	606
SmiMI	CAYNNNNRTG	3 cut(s)	108, 468, 498
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	4 cut(s)	160, 249, 283, 373
SstI	GAGCTC	1 cut(s)	529
StyD4I	CCNGG	3 cut(s)	96, 342, 391
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	4 cut(s)	18, 167, 332, 591
TaqII	GACCGA	1 cut(s)	559
TasI	AATT	1 cut(s)	336
TatI	WGTACW	1 cut(s)	431
TauI	GCSGC	1 cut(s)	252
TfiI	GAWTC	4 cut(s)	8, 15, 20, 450
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	1 cut(s)	354
TspGWI	ACGGA	2 cut(s)	572, 609
VpaK11BI	GGWCC	1 cut(s)	606
XapI	RAATTY	1 cut(s)	336
XmiI	GTMKAC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.