Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007293

Physical Location & Seq

Genomic Coordinates Forward (+)

16656449 .. 16658489

Gene Structure 2041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG174800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCAATGCAGAGGTGCAGATTATGCAGAGATCATGGTAGTGCGTCATGGCGAAACGGCCTGGAACGCCGATGGTAGAATCCAGGGACATCTGGATGTTGAATTGAATGATGCTGGGAGGCAGCAAGCAGCGGTAGTGGGCAATAAATTATCCAAGGATCCTAAAATCTCTCTTGTATACTCGTCTGACTTGAAACGAGCTTATGAGACTGCTCAAATAATCGCAGCCAGGTGCGGTGGGCTAAATGTTGTAACAGATCCTGATTTACGAGAAAGACACTTGGGCGATCTTCAAGGCCTTGTATTTAGAGAAGCGGCCAAACTTAGTTCTAAGGCCTACCAGGCCTTTACTTCTCACCGCACATGTCAAGATATTCCAGGTGGCGGAGAAAGTCTTGATCAACTTTATGACCGCTGCACATCTGCATTGGAGAGAATTGGTGGTAAGCACAAAGGAGAGCGAGTAGTTGTGGTCACTCATGGGGGTGTCATCAGATCACTGTACCAGCGGGCTTGCCCAAATGGCAGTTCCATAGGGAAAGTGGCCAATACATCGATCAACACATTTCACTTGTATGATGAGGACAAATGGACCATAAAATCCTGGGGTGATATTAGTCATCTGAAGGAAACAGATTATCTGGAATCAGGTTTCGGAGGGGACACAACTTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

225

Amino Acids

24.58

Weight (kDa)

6.44

Isoelectric Point (pI)

25.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	11 - 204	1.9e-56	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50520
fragaria_vesca	FvH4_1g15610 FvH4_1g15610 FvH4_1g15610 FvH4_1g15610
malus_domestica	MD02G1168200.v1.1 MD15G1280300.v1.1 MD15G1280400.v1.1 MD15G1280500.v1.1
prunus_persica	Prupe.7G136800_v2.0.a1 Prupe.7G136800_v2.0.a1 Prupe.7G136900_v2.0.a1
pyrus_communis	pycom15g24320 pycom15g24330
rosa_chinensis	RchiOBHm_Chr2g0104951
rosa_laevigata	RLG00000017378
rosa_multiflora	Rmu_sc0001247.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138630
rosa_rugosa	Rorug02G0123900 Rorug02G0124000
rosa_samantha	Rh2AG174800 Rh2BG182600 Rh2CG179300 Rh2DG181200
rosa_wichuraiana	Rw2G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	7 cut(s)	131, 234, 314, 358, 384, 412, 508
AclWI	GGATC	3 cut(s)	152, 165, 251
AcoI	YGGCCR	2 cut(s)	315, 543
AcuI	CTGAAG	1 cut(s)	644
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	1 cut(s)	383
AflIII	ACRYGT	1 cut(s)	362
AgsI	TTSAA	4 cut(s)	101, 106, 193, 293
AjnI	CCWGG	6 cut(s)	59, 81, 227, 339, 376, 602
AjuI	GAANNNNNNNTTGG	2 cut(s)	511, 543
AluBI	AGCT	1 cut(s)	200
AluI	AGCT	1 cut(s)	200
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	3 cut(s)	152, 165, 251
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	6 cut(s)	57, 295, 315, 333, 342, 543
ApeKI	GCWGC	4 cut(s)	121, 128, 224, 414
AspS9I	GGNCC	1 cut(s)	591
AsuHPI	GGTGA	2 cut(s)	347, 620
AvaII	GGWCC	1 cut(s)	591
BalI	TGGCCA	1 cut(s)	545
BamHI	GGATCC	1 cut(s)	157
BbvI	GCAGC	4 cut(s)	133, 140, 236, 401
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	6 cut(s)	61, 83, 229, 341, 378, 604
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	200
BglI	GCCNNNNNGGC	2 cut(s)	341, 522
BisI	GCNGC	5 cut(s)	122, 129, 225, 315, 415
BlsI	GCNGC	5 cut(s)	123, 130, 226, 316, 416
Bme1390I	CCNGG	6 cut(s)	61, 83, 229, 341, 378, 604
Bme18I	GGWCC	1 cut(s)	591
BmgT120I	GGNCC	1 cut(s)	591
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	6 cut(s)	61, 83, 229, 341, 378, 604
BmsI	GCATC	1 cut(s)	100
Bsa29I	ATCGAT	1 cut(s)	554
BsaJI	CCNNGG	3 cut(s)	82, 153, 603
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse3DI	GCAATG	1 cut(s)	11
BseBI	CCWGG	6 cut(s)	61, 83, 229, 341, 378, 604
BseCI	ATCGAT	1 cut(s)	554
BseDI	CCNNGG	3 cut(s)	82, 153, 603
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	11
BseXI	GCAGC	4 cut(s)	133, 140, 236, 401
BseYI	CCCAGC	1 cut(s)	113
BsgI	GTGCAG	2 cut(s)	36, 400
BshFI	GGCC	6 cut(s)	59, 297, 317, 335, 344, 545
BshVI	ATCGAT	1 cut(s)	554
BslFI	GGGAC	2 cut(s)	99, 674
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	2 cut(s)	99, 674
BsnI	GGCC	6 cut(s)	59, 297, 317, 335, 344, 545
Bsp143I	GATC	7 cut(s)	30, 157, 256, 286, 397, 494, 555
BspACI	CCGC	7 cut(s)	131, 234, 314, 358, 384, 412, 508
BspANI	GGCC	6 cut(s)	59, 297, 317, 335, 344, 545
BspDI	ATCGAT	1 cut(s)	554
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	3 cut(s)	152, 165, 251
BsrDI	GCAATG	1 cut(s)	11
BssECI	CCNNGG	3 cut(s)	82, 153, 603
BssMI	GATC	7 cut(s)	30, 157, 256, 286, 397, 494, 555
BssNAI	GTATAC	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	153
Bst1107I	GTATAC	1 cut(s)	178
Bst2UI	CCWGG	6 cut(s)	61, 83, 229, 341, 378, 604
Bst4CI	ACNGT	1 cut(s)	501
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	3 cut(s)	126, 510, 514
BstDEI	CTNAG	2 cut(s)	323, 330
BstF5I	GGATG	1 cut(s)	100
BstKTI	GATC	7 cut(s)	33, 160, 259, 289, 400, 497, 558
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	7 cut(s)	30, 157, 256, 286, 397, 494, 555
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 65, 341, 522
BstNI	CCWGG	6 cut(s)	61, 83, 229, 341, 378, 604
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	6 cut(s)	59, 81, 227, 339, 376, 602
BstV1I	GCAGC	4 cut(s)	133, 140, 236, 401
BstX2I	RGATCY	2 cut(s)	157, 256
BstYI	RGATCY	2 cut(s)	157, 256
BstZ17I	GTATAC	1 cut(s)	178
Bsu15I	ATCGAT	1 cut(s)	554
BsuRI	GGCC	6 cut(s)	59, 297, 317, 335, 344, 545
BsuTUI	ATCGAT	1 cut(s)	554
BtsCI	GGATG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	497
Cac8I	GCNNGC	3 cut(s)	126, 510, 514
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	591
ClaI	ATCGAT	1 cut(s)	554
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	4 cut(s)	34, 47, 363, 479
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	2 cut(s)	323, 330
DpnI	GATC	7 cut(s)	32, 159, 258, 288, 399, 496, 557
DpnII	GATC	7 cut(s)	30, 157, 256, 286, 397, 494, 555
EaeI	YGGCCR	2 cut(s)	315, 543
EciI	GGCGGA	1 cut(s)	399
Eco130I	CCWWGG	1 cut(s)	153
Eco147I	AGGCCT	3 cut(s)	297, 335, 344
Eco47I	GGWCC	1 cut(s)	591
Eco57I	CTGAAG	1 cut(s)	644
EcoRII	CCWGG	6 cut(s)	59, 81, 227, 339, 376, 602
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	4 cut(s)	37, 50, 366, 482
FaqI	GGGAC	2 cut(s)	99, 674
FatI	CATG	4 cut(s)	33, 46, 362, 478
FauI	CCCGC	1 cut(s)	501
FbaI	TGATCA	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	5 cut(s)	122, 129, 225, 315, 415
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	5 cut(s)	122, 129, 225, 315, 415
GluI	GCNGC	5 cut(s)	122, 129, 225, 315, 415
GsaI	CCCAGC	1 cut(s)	117
HaeIII	GGCC	6 cut(s)	59, 297, 317, 335, 344, 545
HgaI	GACGC	1 cut(s)	32
Hin1II	CATG	4 cut(s)	37, 50, 366, 482
HinfI	GANTC	2 cut(s)	78, 644
HphI	GGTGA	2 cut(s)	347, 620
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	4 cut(s)	187, 494, 624, 656
Hpy188III	TCNNGA	5 cut(s)	92, 260, 368, 395, 641
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	619
HpyCH4III	ACNGT	1 cut(s)	501
HpyCH4V	TGCA	6 cut(s)	4, 9, 17, 26, 417, 425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 65, 341, 522
HpyF3I	CTNAG	2 cut(s)	323, 330
Hsp92II	CATG	4 cut(s)	37, 50, 366, 482
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	7 cut(s)	30, 157, 256, 286, 397, 494, 555
Lsp1109I	GCAGC	4 cut(s)	133, 140, 236, 401
LweI	GCATC	1 cut(s)	100
MaeIII	GTNAC	2 cut(s)	250, 472
MalI	GATC	7 cut(s)	32, 159, 258, 288, 399, 496, 557
MboI	GATC	7 cut(s)	30, 157, 256, 286, 397, 494, 555
MboII	GAAGA	1 cut(s)	281
MflI	RGATCY	2 cut(s)	157, 256
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	3 cut(s)	101, 146, 435
MluNI	TGGCCA	1 cut(s)	545
MnlI	CCTC	4 cut(s)	5, 111, 574, 650
Mox20I	TGGCCA	1 cut(s)	545
MscI	TGGCCA	1 cut(s)	545
MslI	CAYNNNNRTG	4 cut(s)	38, 93, 483, 573
Msp20I	TGGCCA	1 cut(s)	545
MspA1I	CMGCKG	3 cut(s)	131, 414, 508
MspR9I	CCNGG	6 cut(s)	61, 83, 229, 341, 378, 604
MvaI	CCWGG	6 cut(s)	61, 83, 229, 341, 378, 604
MwoI	GCNNNNNNNGC	4 cut(s)	23, 65, 341, 522
NdeII	GATC	7 cut(s)	30, 157, 256, 286, 397, 494, 555
NlaIII	CATG	4 cut(s)	37, 50, 366, 482
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	472
NspI	RCATGY	1 cut(s)	366
PceI	AGGCCT	3 cut(s)	297, 335, 344
PciI	ACATGT	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	78, 644
PkrI	GCNGC	5 cut(s)	123, 130, 226, 316, 416
PscI	ACATGT	1 cut(s)	362
Psp6I	CCWGG	6 cut(s)	59, 81, 227, 339, 376, 602
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	6 cut(s)	59, 81, 227, 339, 376, 602
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	591
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	2 cut(s)	157, 256
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
RseI	CAYNNNNRTG	4 cut(s)	38, 93, 483, 573
SatI	GCNGC	5 cut(s)	122, 129, 225, 315, 415
Sau3AI	GATC	7 cut(s)	30, 157, 256, 286, 397, 494, 555
Sau96I	GGNCC	1 cut(s)	591
ScrFI	CCNGG	6 cut(s)	61, 83, 229, 341, 378, 604
SetI	ASST	5 cut(s)	16, 202, 233, 382, 652
SfaNI	GCATC	1 cut(s)	100
SfiI	GGCCNNNNNGGCC	1 cut(s)	341
SinI	GGWCC	1 cut(s)	591
SmiMI	CAYNNNNRTG	4 cut(s)	38, 93, 483, 573
Sse9I	AATT	3 cut(s)	101, 146, 435
SseBI	AGGCCT	3 cut(s)	297, 335, 344
SsiI	CCGC	7 cut(s)	131, 234, 314, 358, 384, 412, 508
StuI	AGGCCT	3 cut(s)	297, 335, 344
StyD4I	CCNGG	6 cut(s)	59, 81, 227, 339, 376, 602
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	501
TaqI	TCGA	1 cut(s)	554
TasI	AATT	3 cut(s)	101, 146, 435
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	2 cut(s)	78, 644
TscAI	CASTG	1 cut(s)	504
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	4 cut(s)	121, 128, 224, 414
Tsp45I	GTSAC	1 cut(s)	472
TspRI	CASTG	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	591
XceI	RCATGY	1 cut(s)	366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XmiI	GTMKAC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.