Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007293

Physical Location & Seq

Genomic Coordinates Reverse (-)

76800768 .. 76803678

Gene Structure 2911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGACGTCGTCGTTCGTATTTGGGCCAGCCCAATTGTACATTCCGCCTGATCGGGCTGTAAGAAACAACGACTCCCTTCAATTCTTTAGCAGAAGATTCAATTCAACCACAAATCCTCTGCTTCTTTCCGACTTCGCTCGGAACAGCAACGGCAAAGTCACCATGGGCGATTCCGACTCCAATTCCAGCGGTGGTGCAGATTATGCAGAAATCATGGTAGTGCGTCACGGCGAAACGGCCTGGAACTCTGATGGTAGAATCCAGGGACATCTGGATGTCGAATTGAATGATGCTGGGAGGCAGCAAGCAGCTGCAGTTGTAACAGATCCTGATTTACGAGAAAGACACTTGGGCGATCTTCAAGGCCTTGTATTTAGAGACGCAGCCAAACTTAGTTCTAAGGCCTACCAGGCCTTTACTTCTCACCGCACATGTCAAGATATTCCAGGTGGCGGAGAAAGTCTTGATCAACTTTATGACCGCTGCACATCTGCATTGGAGAGAATTGCTGGTAAGCACAAAGGAGAGCGAGTAGTTGTGGTCACTCATGGGGGTGTCATCAGATCACTGTACCAGCGGGCTTGCCCAAATGGCAGTTCCATAGGGAAAGTGGCCAATACATCGATCAACACATTTCACTTGTATGATGAGGACAAATGGACCATAAAATCCTGGGGTGATATTAGTCATCTGAAGGAAACAGATTATCTGGAATCAGGTTTCGGAGGGGACGCAACTTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

248

Amino Acids

27.08

Weight (kDa)

5.89

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	71 - 107	5.2e-12	Histidine phosphatase superfamily (branch 1)
His_Phos_1	PF00300	106 - 227	3.3e-25	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50520
fragaria_vesca	FvH4_1g15610 FvH4_1g15610 FvH4_1g15610 FvH4_1g15610
malus_domestica	MD02G1168200.v1.1 MD15G1280300.v1.1 MD15G1280400.v1.1 MD15G1280500.v1.1
prunus_persica	Prupe.7G136800_v2.0.a1 Prupe.7G136800_v2.0.a1 Prupe.7G136900_v2.0.a1
pyrus_communis	pycom15g24320 pycom15g24330
rosa_chinensis	RchiOBHm_Chr2g0104951
rosa_laevigata	RLG00000017378
rosa_multiflora	Rmu_sc0001247.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138630
rosa_rugosa	Rorug02G0123900 Rorug02G0124000
rosa_samantha	Rh2AG174800 Rh2BG182600 Rh2CG179300 Rh2DG181200
rosa_wichuraiana	Rw2G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AciI	CCGC	6 cut(s)	44, 189, 427, 453, 481, 577
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	612
AcuI	CTGAAG	1 cut(s)	713
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	38, 572
AfiI	CCNNNNNNNGG	1 cut(s)	452
AflIII	ACRYGT	1 cut(s)	431
AgsI	TTSAA	5 cut(s)	80, 100, 105, 286, 362
AjnI	CCWGG	5 cut(s)	239, 261, 408, 445, 671
AjuI	GAANNNNNNNTTGG	4 cut(s)	24, 56, 580, 612
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	1 cut(s)	320
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	6 cut(s)	23, 237, 364, 402, 411, 612
ApeKI	GCWGC	5 cut(s)	301, 308, 311, 383, 483
AspS9I	GGNCC	2 cut(s)	23, 660
AsuHPI	GGTGA	3 cut(s)	151, 416, 689
AvaII	GGWCC	1 cut(s)	660
BalI	TGGCCA	1 cut(s)	614
BbvI	GCAGC	5 cut(s)	298, 313, 320, 395, 470
BccI	CCATC	1 cut(s)	245
BceAI	ACGGC	3 cut(s)	166, 244, 252
BciT130I	CCWGG	5 cut(s)	241, 263, 410, 447, 673
BclI	TGATCA	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	312
BglI	GCCNNNNNGGC	2 cut(s)	410, 591
BisI	GCNGC	5 cut(s)	302, 309, 312, 384, 484
BlsI	GCNGC	5 cut(s)	303, 310, 313, 385, 485
Bme1390I	CCNGG	5 cut(s)	241, 263, 410, 447, 673
Bme18I	GGWCC	1 cut(s)	660
BmgT120I	GGNCC	2 cut(s)	23, 660
BmrFI	CCNGG	5 cut(s)	241, 263, 410, 447, 673
BmsI	GCATC	1 cut(s)	280
Bsa29I	ATCGAT	1 cut(s)	623
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	162, 262, 672
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 516, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
BseBI	CCWGG	5 cut(s)	241, 263, 410, 447, 673
BseCI	ATCGAT	1 cut(s)	623
BseDI	CCNNGG	3 cut(s)	162, 262, 672
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseXI	GCAGC	5 cut(s)	298, 313, 320, 395, 470
BseYI	CCCAGC	1 cut(s)	293
BsgI	GTGCAG	2 cut(s)	216, 469
BshFI	GGCC	6 cut(s)	25, 239, 366, 404, 413, 614
BshVI	ATCGAT	1 cut(s)	623
BslFI	GGGAC	2 cut(s)	279, 743
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmAI	GTCTC	1 cut(s)	372
BsmBI	CGTCTC	1 cut(s)	372
BsmFI	GGGAC	2 cut(s)	279, 743
BsnI	GGCC	6 cut(s)	25, 239, 366, 404, 413, 614
Bsp1407I	TGTACA	1 cut(s)	36
Bsp143I	GATC	6 cut(s)	49, 325, 355, 466, 563, 624
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	6 cut(s)	44, 189, 427, 453, 481, 577
BspANI	GGCC	6 cut(s)	25, 239, 366, 404, 413, 614
BspDI	ATCGAT	1 cut(s)	623
BspMAI	CTGCAG	1 cut(s)	316
BspPI	GGATC	1 cut(s)	320
BsrGI	TGTACA	1 cut(s)	36
BssECI	CCNNGG	3 cut(s)	162, 262, 672
BssMI	GATC	6 cut(s)	49, 325, 355, 466, 563, 624
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	5 cut(s)	241, 263, 410, 447, 673
Bst4CI	ACNGT	1 cut(s)	570
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstAUI	TGTACA	1 cut(s)	36
BstC8I	GCNNGC	4 cut(s)	27, 306, 579, 583
BstDEI	CTNAG	2 cut(s)	392, 399
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	6 cut(s)	52, 328, 358, 469, 566, 627
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	6 cut(s)	49, 325, 355, 466, 563, 624
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 410, 591
BstNI	CCWGG	5 cut(s)	241, 263, 410, 447, 673
BstNSI	RCATGY	1 cut(s)	435
BstSCI	CCNGG	5 cut(s)	239, 261, 408, 445, 671
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	5 cut(s)	298, 313, 320, 395, 470
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
Bsu15I	ATCGAT	1 cut(s)	623
BsuRI	GGCC	6 cut(s)	25, 239, 366, 404, 413, 614
BsuTUI	ATCGAT	1 cut(s)	623
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	566
Cac8I	GCNNGC	4 cut(s)	27, 306, 579, 583
CaiI	CAGNNNCTG	1 cut(s)	329
Cfr13I	GGNCC	2 cut(s)	23, 660
ClaI	ATCGAT	1 cut(s)	623
CseI	GACGC	3 cut(s)	212, 389, 740
Csp6I	GTAC	2 cut(s)	37, 571
CviAII	CATG	4 cut(s)	163, 214, 432, 548
CviQI	GTAC	2 cut(s)	37, 571
DdeI	CTNAG	2 cut(s)	392, 399
DpnI	GATC	6 cut(s)	51, 327, 357, 468, 565, 626
DpnII	GATC	6 cut(s)	49, 325, 355, 466, 563, 624
EaeI	YGGCCR	1 cut(s)	612
EciI	GGCGGA	2 cut(s)	33, 468
Eco130I	CCWWGG	1 cut(s)	162
Eco147I	AGGCCT	3 cut(s)	366, 404, 413
Eco47I	GGWCC	1 cut(s)	660
Eco57I	CTGAAG	1 cut(s)	713
EcoRII	CCWGG	5 cut(s)	239, 261, 408, 445, 671
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
Esp3I	CGTCTC	1 cut(s)	372
FaeI	CATG	4 cut(s)	166, 217, 435, 551
FaiI	YATR	9 cut(s)	164, 204, 215, 433, 477, 549, 602, 645, 665
FaqI	GGGAC	2 cut(s)	279, 743
FatI	CATG	4 cut(s)	162, 213, 431, 547
FauI	CCCGC	1 cut(s)	570
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	5 cut(s)	302, 309, 312, 384, 484
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	5 cut(s)	302, 309, 312, 384, 484
GluI	GCNGC	5 cut(s)	302, 309, 312, 384, 484
GsaI	CCCAGC	1 cut(s)	297
HaeIII	GGCC	6 cut(s)	25, 239, 366, 404, 413, 614
HgaI	GACGC	3 cut(s)	212, 389, 740
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	166, 217, 435, 551
HinfI	GANTC	6 cut(s)	71, 96, 170, 176, 258, 713
HphI	GGTGA	3 cut(s)	151, 416, 689
Hpy188I	TCNGA	7 cut(s)	130, 141, 175, 250, 563, 693, 725
Hpy188III	TCNNGA	5 cut(s)	272, 329, 437, 464, 710
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyAV	CCTTC	2 cut(s)	86, 688
HpyCH4III	ACNGT	1 cut(s)	570
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	5 cut(s)	197, 206, 314, 486, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 410, 591
HpyF3I	CTNAG	2 cut(s)	392, 399
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	166, 217, 435, 551
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	6 cut(s)	49, 325, 355, 466, 563, 624
Lsp1109I	GCAGC	5 cut(s)	298, 313, 320, 395, 470
LweI	GCATC	1 cut(s)	280
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	4 cut(s)	157, 224, 319, 541
MalI	GATC	6 cut(s)	51, 327, 357, 468, 565, 626
MboI	GATC	6 cut(s)	49, 325, 355, 466, 563, 624
MboII	GAAGA	2 cut(s)	105, 350
MfeI	CAATTG	1 cut(s)	32
MflI	RGATCY	1 cut(s)	325
MlsI	TGGCCA	1 cut(s)	614
MluCI	AATT	6 cut(s)	32, 80, 100, 181, 281, 504
MluNI	TGGCCA	1 cut(s)	614
MlyI	GAGTC	2 cut(s)	65, 170
MmeI	TCCRAC	2 cut(s)	153, 198
MnlI	CCTC	4 cut(s)	126, 291, 643, 719
Mox20I	TGGCCA	1 cut(s)	614
MscI	TGGCCA	1 cut(s)	614
MslI	CAYNNNNRTG	4 cut(s)	218, 273, 552, 642
Msp20I	TGGCCA	1 cut(s)	614
MspA1I	CMGCKG	4 cut(s)	189, 311, 483, 577
MspR9I	CCNGG	5 cut(s)	241, 263, 410, 447, 673
MunI	CAATTG	1 cut(s)	32
MvaI	CCWGG	5 cut(s)	241, 263, 410, 447, 673
MwoI	GCNNNNNNNGC	3 cut(s)	203, 410, 591
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	6 cut(s)	49, 325, 355, 466, 563, 624
NlaIII	CATG	4 cut(s)	166, 217, 435, 551
NmuCI	GTSAC	3 cut(s)	157, 224, 541
NspI	RCATGY	1 cut(s)	435
PceI	AGGCCT	3 cut(s)	366, 404, 413
PciI	ACATGT	1 cut(s)	431
PfeI	GAWTC	4 cut(s)	96, 170, 258, 713
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	5 cut(s)	303, 310, 313, 385, 485
PleI	GAGTC	2 cut(s)	65, 170
PpsI	GAGTC	2 cut(s)	65, 170
PscI	ACATGT	1 cut(s)	431
Psp6I	CCWGG	5 cut(s)	239, 261, 408, 445, 671
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	5 cut(s)	239, 261, 408, 445, 671
PspPI	GGNCC	2 cut(s)	23, 660
PstI	CTGCAG	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	325
PsyI	GACNNNGTC	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	2 cut(s)	38, 572
RsaNI	GTAC	2 cut(s)	37, 571
RseI	CAYNNNNRTG	4 cut(s)	218, 273, 552, 642
SatI	GCNGC	5 cut(s)	302, 309, 312, 384, 484
Sau3AI	GATC	6 cut(s)	49, 325, 355, 466, 563, 624
Sau96I	GGNCC	2 cut(s)	23, 660
SchI	GAGTC	2 cut(s)	65, 170
ScrFI	CCNGG	5 cut(s)	241, 263, 410, 447, 673
SetI	ASST	4 cut(s)	8, 313, 451, 721
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	312
SfiI	GGCCNNNNNGGCC	1 cut(s)	410
SinI	GGWCC	1 cut(s)	660
SmiMI	CAYNNNNRTG	4 cut(s)	218, 273, 552, 642
Sse9I	AATT	6 cut(s)	32, 80, 100, 181, 281, 504
SseBI	AGGCCT	3 cut(s)	366, 404, 413
SsiI	CCGC	6 cut(s)	44, 189, 427, 453, 481, 577
StuI	AGGCCT	3 cut(s)	366, 404, 413
StyD4I	CCNGG	5 cut(s)	239, 261, 408, 445, 671
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	570
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	2 cut(s)	279, 623
TasI	AATT	6 cut(s)	32, 80, 100, 181, 281, 504
TatI	WGTACW	1 cut(s)	36
TfiI	GAWTC	4 cut(s)	96, 170, 258, 713
TscAI	CASTG	1 cut(s)	573
TseFI	GTSAC	3 cut(s)	157, 224, 541
TseI	GCWGC	5 cut(s)	301, 308, 311, 383, 483
Tsp45I	GTSAC	3 cut(s)	157, 224, 541
TspRI	CASTG	1 cut(s)	573
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	660
XceI	RCATGY	1 cut(s)	435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	607
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.