Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007293

Physical Location & Seq

Genomic Coordinates Forward (+)

15850912 .. 15853078

Gene Structure 2167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017378

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCCGATTCCGACTCCGATTCCAGAGGTGCAGATTATGCAGAGATCATGGTAGTGCGTCATGGCGAAACGGCCTGGAACGCCGATGGTAGAATCCAGGGACATCTGGATGTTGAATTGAATGATGCTGGGAGGCAGCAAGCAGCGGTAGTGGGCAAAAAATTATCCAAGGATCCTAAAATCTCTCTTGTATACTCGTCTGACTTGAAACGAGCTTATGAGACTGCTCAAATAATCGCAGCCAGGTGCGGTGGGCTAAATGTTGTAACAGATCCTGATTTACGAGAAAGACACTTGGGCGATCTTCAAGGCCTTGTATTTAGAGAAGCGGCCAAACTTAGTTCTAAGGCCTACCAGGCCTTTACTTCTCACCGCACATGTCAAGATATTCCAGGTGGCGGAGAAAGTCTTGATCAACTTTATGACCGCTGCACATCTGCATTGGAGAGAATTGGTGGTAAGCACAAAGGAGAGCGAGTGGTTGTGGTCACTCATGGGGGTGTCATCAGATCACTGTACCAGCGGGCTTGCCCAAATGGCAGTTCCATAGGGAAAGTGGCCAATACATCAATCAACACATTTCACTTGTATGATGAGGACAAATGGACCATAAAATCCTGGGGTGATATTAGTCATCTGAAGGAAACAGATTATCTGGAATCAGGTTTCGGAGGGGACGGAACTTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

231

Amino Acids

25.0

Weight (kDa)

6.06

Isoelectric Point (pI)

28.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	16 - 209	1.4e-56	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50520
fragaria_vesca	FvH4_1g15610 FvH4_1g15610 FvH4_1g15610 FvH4_1g15610
malus_domestica	MD02G1168200.v1.1 MD15G1280300.v1.1 MD15G1280400.v1.1 MD15G1280500.v1.1
prunus_persica	Prupe.7G136800_v2.0.a1 Prupe.7G136800_v2.0.a1 Prupe.7G136900_v2.0.a1
pyrus_communis	pycom15g24320 pycom15g24330
rosa_chinensis	RchiOBHm_Chr2g0104951
rosa_laevigata	RLG00000017378
rosa_multiflora	Rmu_sc0001247.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138630
rosa_rugosa	Rorug02G0123900 Rorug02G0124000
rosa_samantha	Rh2AG174800 Rh2BG182600 Rh2CG179300 Rh2DG181200
rosa_wichuraiana	Rw2G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	7 cut(s)	146, 249, 329, 373, 399, 427, 523
AclWI	GGATC	3 cut(s)	167, 180, 266
AcoI	YGGCCR	3 cut(s)	3, 330, 558
AcuI	CTGAAG	1 cut(s)	659
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	1 cut(s)	398
AflIII	ACRYGT	1 cut(s)	377
AgsI	TTSAA	4 cut(s)	116, 121, 208, 308
AjnI	CCWGG	6 cut(s)	74, 96, 242, 354, 391, 617
AjuI	GAANNNNNNNTTGG	2 cut(s)	526, 558
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	3 cut(s)	167, 180, 266
AlwNI	CAGNNNCTG	1 cut(s)	275
AoxI	GGCC	7 cut(s)	3, 72, 310, 330, 348, 357, 558
ApeKI	GCWGC	4 cut(s)	136, 143, 239, 429
AspS9I	GGNCC	1 cut(s)	606
AsuHPI	GGTGA	2 cut(s)	362, 635
AvaII	GGWCC	1 cut(s)	606
BalI	TGGCCA	1 cut(s)	560
BamHI	GGATCC	1 cut(s)	172
BbvI	GCAGC	4 cut(s)	148, 155, 251, 416
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	87
BciT130I	CCWGG	6 cut(s)	76, 98, 244, 356, 393, 619
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	215
BglI	GCCNNNNNGGC	2 cut(s)	356, 537
BisI	GCNGC	5 cut(s)	137, 144, 240, 330, 430
BlsI	GCNGC	5 cut(s)	138, 145, 241, 331, 431
Bme1390I	CCNGG	6 cut(s)	76, 98, 244, 356, 393, 619
Bme18I	GGWCC	1 cut(s)	606
BmgT120I	GGNCC	1 cut(s)	606
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	6 cut(s)	76, 98, 244, 356, 393, 619
BmsI	GCATC	1 cut(s)	115
BsaJI	CCNNGG	3 cut(s)	97, 168, 618
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
BseBI	CCWGG	6 cut(s)	76, 98, 244, 356, 393, 619
BseDI	CCNNGG	3 cut(s)	97, 168, 618
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseXI	GCAGC	4 cut(s)	148, 155, 251, 416
BseYI	CCCAGC	1 cut(s)	128
BsgI	GTGCAG	2 cut(s)	51, 415
BshFI	GGCC	7 cut(s)	5, 74, 312, 332, 350, 359, 560
BslFI	GGGAC	2 cut(s)	114, 689
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	2 cut(s)	114, 689
BsnI	GGCC	7 cut(s)	5, 74, 312, 332, 350, 359, 560
Bsp143I	GATC	6 cut(s)	45, 172, 271, 301, 412, 509
BspACI	CCGC	7 cut(s)	146, 249, 329, 373, 399, 427, 523
BspANI	GGCC	7 cut(s)	5, 74, 312, 332, 350, 359, 560
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	3 cut(s)	167, 180, 266
BssECI	CCNNGG	3 cut(s)	97, 168, 618
BssMI	GATC	6 cut(s)	45, 172, 271, 301, 412, 509
BssNAI	GTATAC	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	168
Bst1107I	GTATAC	1 cut(s)	193
Bst2UI	CCWGG	6 cut(s)	76, 98, 244, 356, 393, 619
Bst4CI	ACNGT	1 cut(s)	516
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	3 cut(s)	141, 525, 529
BstDEI	CTNAG	2 cut(s)	338, 345
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	6 cut(s)	48, 175, 274, 304, 415, 512
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	6 cut(s)	45, 172, 271, 301, 412, 509
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 80, 356, 537
BstNI	CCWGG	6 cut(s)	76, 98, 244, 356, 393, 619
BstNSI	RCATGY	1 cut(s)	381
BstSCI	CCNGG	6 cut(s)	74, 96, 242, 354, 391, 617
BstV1I	GCAGC	4 cut(s)	148, 155, 251, 416
BstX2I	RGATCY	2 cut(s)	172, 271
BstYI	RGATCY	2 cut(s)	172, 271
BstZ17I	GTATAC	1 cut(s)	193
BsuRI	GGCC	7 cut(s)	5, 74, 312, 332, 350, 359, 560
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	512
Cac8I	GCNNGC	3 cut(s)	141, 525, 529
CaiI	CAGNNNCTG	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	606
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	4 cut(s)	49, 62, 378, 494
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	2 cut(s)	338, 345
DpnI	GATC	6 cut(s)	47, 174, 273, 303, 414, 511
DpnII	GATC	6 cut(s)	45, 172, 271, 301, 412, 509
EaeI	YGGCCR	3 cut(s)	3, 330, 558
EciI	GGCGGA	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	168
Eco147I	AGGCCT	3 cut(s)	312, 350, 359
Eco47I	GGWCC	1 cut(s)	606
Eco57I	CTGAAG	1 cut(s)	659
EcoRII	CCWGG	6 cut(s)	74, 96, 242, 354, 391, 617
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	4 cut(s)	52, 65, 381, 497
FaqI	GGGAC	2 cut(s)	114, 689
FatI	CATG	4 cut(s)	48, 61, 377, 493
FauI	CCCGC	1 cut(s)	516
FbaI	TGATCA	1 cut(s)	412
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	5 cut(s)	137, 144, 240, 330, 430
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	5 cut(s)	137, 144, 240, 330, 430
GluI	GCNGC	5 cut(s)	137, 144, 240, 330, 430
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	7 cut(s)	5, 74, 312, 332, 350, 359, 560
HgaI	GACGC	1 cut(s)	47
Hin1II	CATG	4 cut(s)	52, 65, 381, 497
HinfI	GANTC	5 cut(s)	8, 14, 20, 93, 659
HphI	GGTGA	2 cut(s)	362, 635
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	6 cut(s)	13, 19, 202, 509, 639, 671
Hpy188III	TCNNGA	6 cut(s)	24, 107, 275, 383, 410, 656
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	634
HpyCH4III	ACNGT	1 cut(s)	516
HpyCH4V	TGCA	4 cut(s)	32, 41, 432, 440
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 80, 356, 537
HpyF3I	CTNAG	2 cut(s)	338, 345
Hsp92II	CATG	4 cut(s)	52, 65, 381, 497
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	6 cut(s)	45, 172, 271, 301, 412, 509
Lsp1109I	GCAGC	4 cut(s)	148, 155, 251, 416
LweI	GCATC	1 cut(s)	115
MaeIII	GTNAC	2 cut(s)	265, 487
MalI	GATC	6 cut(s)	47, 174, 273, 303, 414, 511
MboI	GATC	6 cut(s)	45, 172, 271, 301, 412, 509
MboII	GAAGA	1 cut(s)	296
MflI	RGATCY	2 cut(s)	172, 271
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	3 cut(s)	116, 161, 450
MluNI	TGGCCA	1 cut(s)	560
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	4 cut(s)	20, 126, 589, 665
Mox20I	TGGCCA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	560
MslI	CAYNNNNRTG	4 cut(s)	53, 108, 498, 588
Msp20I	TGGCCA	1 cut(s)	560
MspA1I	CMGCKG	3 cut(s)	146, 429, 523
MspR9I	CCNGG	6 cut(s)	76, 98, 244, 356, 393, 619
MvaI	CCWGG	6 cut(s)	76, 98, 244, 356, 393, 619
MwoI	GCNNNNNNNGC	4 cut(s)	38, 80, 356, 537
NdeII	GATC	6 cut(s)	45, 172, 271, 301, 412, 509
NlaIII	CATG	4 cut(s)	52, 65, 381, 497
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	487
NspI	RCATGY	1 cut(s)	381
PceI	AGGCCT	3 cut(s)	312, 350, 359
PciI	ACATGT	1 cut(s)	377
PfeI	GAWTC	4 cut(s)	8, 20, 93, 659
PkrI	GCNGC	5 cut(s)	138, 145, 241, 331, 431
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PscI	ACATGT	1 cut(s)	377
Psp6I	CCWGG	6 cut(s)	74, 96, 242, 354, 391, 617
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	6 cut(s)	74, 96, 242, 354, 391, 617
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	606
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	2 cut(s)	172, 271
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	4 cut(s)	53, 108, 498, 588
SatI	GCNGC	5 cut(s)	137, 144, 240, 330, 430
Sau3AI	GATC	6 cut(s)	45, 172, 271, 301, 412, 509
Sau96I	GGNCC	1 cut(s)	606
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	6 cut(s)	76, 98, 244, 356, 393, 619
SetI	ASST	5 cut(s)	31, 217, 248, 397, 667
SfaNI	GCATC	1 cut(s)	115
SfiI	GGCCNNNNNGGCC	1 cut(s)	356
SinI	GGWCC	1 cut(s)	606
SmiMI	CAYNNNNRTG	4 cut(s)	53, 108, 498, 588
Sse9I	AATT	3 cut(s)	116, 161, 450
SseBI	AGGCCT	3 cut(s)	312, 350, 359
SsiI	CCGC	7 cut(s)	146, 249, 329, 373, 399, 427, 523
StuI	AGGCCT	3 cut(s)	312, 350, 359
StyD4I	CCNGG	6 cut(s)	74, 96, 242, 354, 391, 617
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	516
TasI	AATT	3 cut(s)	116, 161, 450
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	4 cut(s)	8, 20, 93, 659
TscAI	CASTG	1 cut(s)	519
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	4 cut(s)	136, 143, 239, 429
Tsp45I	GTSAC	1 cut(s)	487
TspGWI	ACGGA	1 cut(s)	693
TspRI	CASTG	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	606
XceI	RCATGY	1 cut(s)	381
XcmI	CCANNNNNNNNNTGG	1 cut(s)	553
XmiI	GTMKAC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.