Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007293

Physical Location & Seq

Genomic Coordinates Forward (+)

24966821 .. 24969700

Gene Structure 2880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1280400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCGGAGGCCCATTCCTGCTGTGTTGACTCGGATTACGCGGAGATCATTGTAGTGCGTCACGGCGAAACAGTCTGGAATGCTGAGGGTAGAATCCAGGGGAATTTGGATGTTGAATTAAATGACGCTGGGAGGCAGCAAGCAGCTGCACTGGGTGATAGATTATCCAAGGATCCCAAAATCTCCCTCGTATATTCTTCCGATCTCAGTCGAGCTTATGAGACTGCACAGATAATTGCCTCTAGGTGTGGTGGGCTAAAGGTTGTAACCGATCCTGATCTACGAGAAAGGCATAAAGGTGTTCTTCAAGGACTTGTATACCATGAAATTCCCAAACTTTATCCTGAGGCTCACCAGACCTTTTTATCTGGTGACATGAGTAATGATTTCCCGGGTGCCGAAGAAAGTCTTGATCAACATCATCAACGCTGCACATCTTCGTTGCAGCGGATTGGCGATAAACACAAAGGAGAGCGAGTAGTTGCGGTCACTCATGGGGGAGTCATAGAAACACTCCTCAGGAAGGGTTACTCAAATGGCGATTTTATAGGCAAAGTGGCCAATACATCGATCCACATATTTCACTTGTACGATGACGAAAAATGGACCGTAAAATCCTTGGGTGATGTTAGTCACCTCAACCAAACAGATTTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

220

Amino Acids

24.27

Weight (kDa)

5.7

Isoelectric Point (pI)

31.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	16 - 209	7.2e-53	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50520
fragaria_vesca	FvH4_1g15610 FvH4_1g15610 FvH4_1g15610 FvH4_1g15610
malus_domestica	MD02G1168200.v1.1 MD15G1280300.v1.1 MD15G1280400.v1.1 MD15G1280500.v1.1
prunus_persica	Prupe.7G136800_v2.0.a1 Prupe.7G136800_v2.0.a1 Prupe.7G136900_v2.0.a1
pyrus_communis	pycom15g24320 pycom15g24330
rosa_chinensis	RchiOBHm_Chr2g0104951
rosa_laevigata	RLG00000017378
rosa_multiflora	Rmu_sc0001247.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138630
rosa_rugosa	Rorug02G0123900 Rorug02G0124000
rosa_samantha	Rh2AG174800 Rh2BG182600 Rh2CG179300 Rh2DG181200
rosa_wichuraiana	Rw2G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	1 cut(s)	41
AciI	CCGC	4 cut(s)	5, 41, 448, 485
AclWI	GGATC	4 cut(s)	167, 180, 266, 565
AcoI	YGGCCR	1 cut(s)	558
AcsI	RAATTY	2 cut(s)	103, 327
AdeI	CACNNNGTG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	590
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	2 cut(s)	116, 308
AjnI	CCWGG	1 cut(s)	96
AjuI	GAANNNNNNNTTGG	1 cut(s)	636
AluBI	AGCT	2 cut(s)	146, 215
AluI	AGCT	2 cut(s)	146, 215
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	4 cut(s)	167, 180, 266, 565
Ama87I	CYCGRG	1 cut(s)	391
AoxI	GGCC	2 cut(s)	9, 558
ApeKI	GCWGC	5 cut(s)	136, 143, 146, 429, 445
ApoI	RAATTY	2 cut(s)	103, 327
AspS9I	GGNCC	2 cut(s)	10, 606
AsuC2I	CCSGG	2 cut(s)	392, 393
AsuHPI	GGTGA	5 cut(s)	167, 344, 383, 626, 635
AvaI	CYCGRG	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	606
AxyI	CCTNAGG	2 cut(s)	345, 518
BalI	TGGCCA	1 cut(s)	560
BamHI	GGATCC	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	395
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	5 cut(s)	133, 148, 155, 416, 457
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	98
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	2 cut(s)	392, 393
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	243
BisI	GCNGC	5 cut(s)	137, 144, 147, 430, 446
BlsI	GCNGC	5 cut(s)	138, 145, 148, 431, 447
Bme1390I	CCNGG	3 cut(s)	98, 392, 393
Bme18I	GGWCC	1 cut(s)	606
BmeT110I	CYCGRG	1 cut(s)	391
BmgT120I	GGNCC	2 cut(s)	10, 606
BmiI	GGNNCC	2 cut(s)	174, 397
BmrFI	CCNGG	3 cut(s)	98, 392, 393
BmrI	ACTGGG	1 cut(s)	161
BmuI	ACTGGG	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	84
BpuMI	CCSGG	2 cut(s)	392, 393
Bsa29I	ATCGAT	1 cut(s)	569
BsaBI	GATNNNNATC	2 cut(s)	276, 417
BsaJI	CCNNGG	4 cut(s)	97, 168, 391, 618
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse1I	ACTGG	1 cut(s)	156
Bse21I	CCTNAGG	2 cut(s)	345, 518
Bse8I	GATNNNNATC	2 cut(s)	276, 417
BseBI	CCWGG	1 cut(s)	98
BseCI	ATCGAT	1 cut(s)	569
BseDI	CCNNGG	4 cut(s)	97, 168, 391, 618
BseGI	GGATG	1 cut(s)	115
BseJI	GATNNNNATC	2 cut(s)	276, 417
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMII	CTCAG	4 cut(s)	75, 220, 336, 532
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	506
BseXI	GCAGC	5 cut(s)	133, 148, 155, 416, 457
BseYI	CCCAGC	1 cut(s)	128
BsgI	GTGCAG	3 cut(s)	132, 210, 415
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	2 cut(s)	11, 560
BshNI	GGYRCC	1 cut(s)	395
BshVI	ATCGAT	1 cut(s)	569
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	11, 560
BsoBI	CYCGRG	1 cut(s)	391
Bsp143I	GATC	7 cut(s)	45, 172, 202, 271, 277, 412, 570
BspACI	CCGC	4 cut(s)	5, 41, 448, 485
BspANI	GGCC	2 cut(s)	11, 560
BspCNI	CTCAG	4 cut(s)	76, 219, 337, 531
BspDI	ATCGAT	1 cut(s)	569
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	174, 397
BspPI	GGATC	4 cut(s)	167, 180, 266, 565
BspT107I	GGYRCC	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	4 cut(s)	97, 168, 391, 618
BssMI	GATC	7 cut(s)	45, 172, 202, 271, 277, 412, 570
BssNAI	GTATAC	1 cut(s)	319
BssT1I	CCWWGG	2 cut(s)	168, 618
Bst1107I	GTATAC	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	73, 610
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	4 cut(s)	84, 206, 345, 518
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstF5I	GGATG	1 cut(s)	115
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	7 cut(s)	48, 175, 205, 274, 280, 415, 573
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	7 cut(s)	45, 172, 202, 271, 277, 412, 570
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	3 cut(s)	96, 390, 391
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	5 cut(s)	133, 148, 155, 416, 457
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BstZ17I	GTATAC	1 cut(s)	319
Bsu15I	ATCGAT	1 cut(s)	569
Bsu36I	CCTNAGG	2 cut(s)	345, 518
BsuRI	GGCC	2 cut(s)	11, 560
BsuTUI	ATCGAT	1 cut(s)	569
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	149
Cac8I	GCNNGC	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	10, 606
Cfr9I	CCCGGG	1 cut(s)	391
ClaI	ATCGAT	1 cut(s)	569
CseI	GACGC	2 cut(s)	47, 134
Csp6I	GTAC	1 cut(s)	589
CviAII	CATG	3 cut(s)	323, 376, 494
CviJI	RGCY	6 cut(s)	11, 146, 215, 256, 350, 560
CviKI_1	RGCY	6 cut(s)	11, 146, 215, 256, 350, 560
CviQI	GTAC	1 cut(s)	589
DdeI	CTNAG	4 cut(s)	84, 206, 345, 518
DpnI	GATC	7 cut(s)	47, 174, 204, 273, 279, 414, 572
DpnII	GATC	7 cut(s)	45, 172, 202, 271, 277, 412, 570
DraIII	CACNNNGTG	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	558
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	168, 618
Eco47I	GGWCC	1 cut(s)	606
Eco81I	CCTNAGG	2 cut(s)	345, 518
Eco88I	CYCGRG	1 cut(s)	391
EcoNI	CCTNNNNNAGG	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	2 cut(s)	168, 618
ErhI	CCWWGG	2 cut(s)	168, 618
FaeI	CATG	3 cut(s)	326, 379, 497
FalI	AAGNNNNNCTT	4 cut(s)	288, 320, 393, 425
FatI	CATG	3 cut(s)	322, 375, 493
FbaI	TGATCA	1 cut(s)	412
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	5 cut(s)	137, 144, 147, 430, 446
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	5 cut(s)	137, 144, 147, 430, 446
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	5 cut(s)	137, 144, 147, 430, 446
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	11, 560
HapII	CCGG	1 cut(s)	392
HgaI	GACGC	2 cut(s)	47, 134
Hin1II	CATG	3 cut(s)	326, 379, 497
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	3 cut(s)	29, 93, 501
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	5 cut(s)	167, 344, 383, 626, 635
Hpy166II	GTNNAC	2 cut(s)	28, 319
Hpy188I	TCNGA	2 cut(s)	34, 202
Hpy188III	TCNNGA	5 cut(s)	76, 275, 344, 410, 520
Hpy8I	GTNNAC	2 cut(s)	28, 319
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	2 cut(s)	73, 610
HpyCH4V	TGCA	4 cut(s)	149, 227, 432, 445
HpyF3I	CTNAG	4 cut(s)	84, 206, 345, 518
Hsp92II	CATG	3 cut(s)	326, 379, 497
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	7 cut(s)	45, 172, 202, 271, 277, 412, 570
Lsp1109I	GCAGC	5 cut(s)	133, 148, 155, 416, 457
MaeI	CTAG	1 cut(s)	243
MaeIII	GTNAC	6 cut(s)	59, 265, 371, 487, 527, 632
MalI	GATC	7 cut(s)	47, 174, 204, 273, 279, 414, 572
MboI	GATC	7 cut(s)	45, 172, 202, 271, 277, 412, 570
MboII	GAAGA	4 cut(s)	189, 296, 413, 429
MflI	RGATCY	1 cut(s)	172
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	4 cut(s)	103, 116, 234, 327
MluNI	TGGCCA	1 cut(s)	560
MlyI	GAGTC	2 cut(s)	23, 510
MnlI	CCTC	7 cut(s)	79, 126, 197, 250, 340, 527, 647
Mox20I	TGGCCA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	1 cut(s)	119
MslI	CAYNNNNRTG	2 cut(s)	53, 297
Msp20I	TGGCCA	1 cut(s)	560
MspA1I	CMGCKG	2 cut(s)	146, 448
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	3 cut(s)	98, 392, 393
Mva1269I	GAATGC	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	98
MvnI	CGCG	1 cut(s)	41
NciI	CCSGG	2 cut(s)	392, 393
NdeII	GATC	7 cut(s)	45, 172, 202, 271, 277, 412, 570
NlaIII	CATG	3 cut(s)	326, 379, 497
NlaIV	GGNNCC	2 cut(s)	174, 397
NmuCI	GTSAC	4 cut(s)	59, 371, 487, 632
PctI	GAATGC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	93
PkrI	GCNGC	5 cut(s)	138, 145, 148, 431, 447
PleI	GAGTC	2 cut(s)	23, 509
PpsI	GAGTC	2 cut(s)	23, 509
Psp6I	CCWGG	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	174, 397
PspPI	GGNCC	2 cut(s)	10, 606
PsuI	RGATCY	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
RseI	CAYNNNNRTG	2 cut(s)	53, 297
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	5 cut(s)	137, 144, 147, 430, 446
Sau3AI	GATC	7 cut(s)	45, 172, 202, 271, 277, 412, 570
Sau96I	GGNCC	2 cut(s)	10, 606
SchI	GAGTC	2 cut(s)	23, 510
ScrFI	CCNGG	3 cut(s)	98, 392, 393
SetI	ASST	7 cut(s)	148, 217, 248, 264, 301, 362, 639
SinI	GGWCC	1 cut(s)	606
SmaI	CCCGGG	1 cut(s)	393
SmiMI	CAYNNNNRTG	2 cut(s)	53, 297
Sse9I	AATT	4 cut(s)	103, 116, 234, 327
SsiI	CCGC	4 cut(s)	5, 41, 448, 485
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	3 cut(s)	96, 390, 391
StyI	CCWWGG	2 cut(s)	168, 618
TaaI	ACNGT	2 cut(s)	73, 610
TaqI	TCGA	2 cut(s)	211, 569
TasI	AATT	4 cut(s)	103, 116, 234, 327
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	4 cut(s)	59, 371, 487, 632
TseI	GCWGC	5 cut(s)	136, 143, 146, 429, 445
Tsp45I	GTSAC	4 cut(s)	59, 371, 487, 632
TspDTI	ATGAA	1 cut(s)	339
TspMI	CCCGGG	1 cut(s)	391
TspRI	CASTG	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	606
XagI	CCTNNNNNAGG	1 cut(s)	521
XapI	RAATTY	2 cut(s)	103, 327
XmaI	CCCGGG	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	318
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.