Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007293

Physical Location & Seq

Genomic Coordinates Forward (+)

24953867 .. 24955964

Gene Structure 2098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1280300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCGGAGGCCGATTCCAGCAGTGTTGACTCGGATTACGCGGAGATCCTTGTAGTGCGTCATGGCGAAACGGTCTGGAATGCTGACGGTAGAATCCAGGGGACTTTGGATGTCGAATTAAATGACGCTGGGAGGCAGCAAGCAGCCGCACTGGGTGATAGATTATCCAAGGATCCCAAAATCTCCCTTGTATATTCTTCAGACCTGAGTCGAGCTTATGAGACTGCACAGATAATTGCATCCAGGTGCGGTGGGCTAAAGGTTGTTACCGATCCTGATCTACGAGAAAGGCATAAAGGTGTTCTTCAAGGACTTGCATACCATGAAATTCCCAAACTGTATCCTGAGGCTTACCAGGCCTTTTTATCTGGTGACACAAGTAAAGATTTCCCGGGTGCTGAAGAAAGTCTTGATCAACATTATCAACGCTGCACATCTTCGTTGCAGCGAATTGGCAATAAACACAAAGGAGAGCGAGTAGTTGCGGTCACCCATGGGGCGGTCATACATACACTCCTCACGAAGGGTTACCCAAATGGCGATTTTATTGGCAAAATTATACCCAATACATCGATCCATGTATTTCGCTTGTACGATGACGAAAAATGGACCGTAAAATCCTTAGGTGATGTTAGTCACCTCAACCAAACTGATTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

221

Amino Acids

24.3

Weight (kDa)

5.69

Isoelectric Point (pI)

29.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	16 - 210	2.5e-54	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50520
fragaria_vesca	FvH4_1g15610 FvH4_1g15610 FvH4_1g15610 FvH4_1g15610
malus_domestica	MD02G1168200.v1.1 MD15G1280300.v1.1 MD15G1280400.v1.1 MD15G1280500.v1.1
prunus_persica	Prupe.7G136800_v2.0.a1 Prupe.7G136800_v2.0.a1 Prupe.7G136900_v2.0.a1
pyrus_communis	pycom15g24320 pycom15g24330
rosa_chinensis	RchiOBHm_Chr2g0104951
rosa_laevigata	RLG00000017378
rosa_multiflora	Rmu_sc0001247.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138630
rosa_rugosa	Rorug02G0123900 Rorug02G0124000
rosa_samantha	Rh2AG174800 Rh2BG182600 Rh2CG179300 Rh2DG181200
rosa_wichuraiana	Rw2G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	41
AciI	CCGC	6 cut(s)	5, 41, 147, 249, 485, 500
AclWI	GGATC	5 cut(s)	40, 167, 180, 266, 568
AcsI	RAATTY	1 cut(s)	327
AcuI	CTGAAG	2 cut(s)	183, 420
AdeI	CACNNNGTG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	593
AfiI	CCNNNNNNNGG	2 cut(s)	499, 523
AgsI	TTSAA	1 cut(s)	308
AjnI	CCWGG	3 cut(s)	96, 242, 354
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	5 cut(s)	40, 167, 180, 266, 568
Ama87I	CYCGRG	1 cut(s)	391
AoxI	GGCC	2 cut(s)	9, 357
ApeKI	GCWGC	4 cut(s)	136, 143, 429, 445
ApoI	RAATTY	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	609
AsuC2I	CCSGG	2 cut(s)	392, 393
AsuHPI	GGTGA	5 cut(s)	167, 383, 481, 629, 638
AvaI	CYCGRG	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	609
AxyI	CCTNAGG	2 cut(s)	345, 622
BamHI	GGATCC	1 cut(s)	172
BbvI	GCAGC	4 cut(s)	148, 155, 416, 457
BciT130I	CCWGG	3 cut(s)	98, 244, 356
BciVI	GTATCC	1 cut(s)	351
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	2 cut(s)	392, 393
BcoDI	GTCTC	1 cut(s)	215
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	5 cut(s)	137, 144, 147, 430, 446
BlsI	GCNGC	5 cut(s)	138, 145, 148, 431, 447
Bme1390I	CCNGG	5 cut(s)	98, 244, 356, 392, 393
Bme18I	GGWCC	1 cut(s)	609
BmeT110I	CYCGRG	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	609
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	5 cut(s)	98, 244, 356, 392, 393
BmrI	ACTGGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	248
BmuI	ACTGGG	1 cut(s)	161
BoxI	GACNNNNGTC	1 cut(s)	207
BpuMI	CCSGG	2 cut(s)	392, 393
Bsa29I	ATCGAT	1 cut(s)	572
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	4 cut(s)	97, 168, 391, 493
BsaXI	ACNNNNNCTCC	4 cut(s)	462, 492, 498, 528
Bsc4I	CCNNNNNNNGG	2 cut(s)	499, 523
Bse1I	ACTGG	1 cut(s)	156
Bse21I	CCTNAGG	2 cut(s)	345, 622
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	3 cut(s)	98, 244, 356
BseCI	ATCGAT	1 cut(s)	572
BseDI	CCNNGG	4 cut(s)	97, 168, 391, 493
BseGI	GGATG	2 cut(s)	115, 239
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	2 cut(s)	499, 523
BseMII	CTCAG	2 cut(s)	197, 336
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	506
BseXI	GCAGC	4 cut(s)	148, 155, 416, 457
BseYI	CCCAGC	1 cut(s)	128
BsgI	GTGCAG	2 cut(s)	210, 415
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	2 cut(s)	11, 359
BshVI	ATCGAT	1 cut(s)	572
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	499, 523
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	11, 359
BsoBI	CYCGRG	1 cut(s)	391
Bsp143I	GATC	6 cut(s)	45, 172, 271, 277, 412, 573
Bsp19I	CCATGG	1 cut(s)	493
BspACI	CCGC	6 cut(s)	5, 41, 147, 249, 485, 500
BspANI	GGCC	2 cut(s)	11, 359
BspCNI	CTCAG	2 cut(s)	198, 337
BspDI	ATCGAT	1 cut(s)	572
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	5 cut(s)	40, 167, 180, 266, 568
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	4 cut(s)	97, 168, 391, 493
BssMI	GATC	6 cut(s)	45, 172, 271, 277, 412, 573
BssT1I	CCWWGG	2 cut(s)	168, 493
Bst2UI	CCWGG	3 cut(s)	98, 244, 356
Bst4CI	ACNGT	4 cut(s)	73, 89, 339, 613
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	3 cut(s)	206, 345, 622
BstDSI	CCRYGG	1 cut(s)	493
BstEII	GGTNACC	2 cut(s)	487, 527
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstF5I	GGATG	2 cut(s)	115, 239
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	6 cut(s)	48, 175, 274, 280, 415, 576
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	6 cut(s)	45, 172, 271, 277, 412, 573
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	3 cut(s)	98, 244, 356
BstPAI	GACNNNNGTC	1 cut(s)	207
BstPI	GGTNACC	2 cut(s)	487, 527
BstSCI	CCNGG	5 cut(s)	96, 242, 354, 390, 391
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	4 cut(s)	148, 155, 416, 457
BstX2I	RGATCY	2 cut(s)	45, 172
BstYI	RGATCY	2 cut(s)	45, 172
Bsu15I	ATCGAT	1 cut(s)	572
Bsu36I	CCTNAGG	2 cut(s)	345, 622
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	2 cut(s)	11, 359
BsuTUI	ATCGAT	1 cut(s)	572
BtgI	CCRYGG	1 cut(s)	493
BtsCI	GGATG	2 cut(s)	115, 239
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	2 cut(s)	28, 149
Cac8I	GCNNGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	609
Cfr9I	CCCGGG	1 cut(s)	391
ClaI	ATCGAT	1 cut(s)	572
CseI	GACGC	2 cut(s)	47, 134
Csp6I	GTAC	1 cut(s)	592
CviAII	CATG	4 cut(s)	62, 323, 494, 578
CviJI	RGCY	6 cut(s)	11, 146, 215, 256, 350, 359
CviKI_1	RGCY	6 cut(s)	11, 146, 215, 256, 350, 359
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	3 cut(s)	206, 345, 622
DpnI	GATC	6 cut(s)	47, 174, 273, 279, 414, 575
DpnII	GATC	6 cut(s)	45, 172, 271, 277, 412, 573
DraIII	CACNNNGTG	1 cut(s)	155
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	168, 493
Eco147I	AGGCCT	1 cut(s)	359
Eco47I	GGWCC	1 cut(s)	609
Eco57I	CTGAAG	2 cut(s)	183, 420
Eco81I	CCTNAGG	2 cut(s)	345, 622
Eco88I	CYCGRG	1 cut(s)	391
Eco91I	GGTNACC	2 cut(s)	487, 527
EcoNI	CCTNNNNNAGG	1 cut(s)	521
EcoO65I	GGTNACC	2 cut(s)	487, 527
EcoRII	CCWGG	3 cut(s)	96, 242, 354
EcoT14I	CCWWGG	2 cut(s)	168, 493
ErhI	CCWWGG	2 cut(s)	168, 493
FaeI	CATG	4 cut(s)	65, 326, 497, 581
FalI	AAGNNNNNCTT	4 cut(s)	288, 320, 393, 425
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	4 cut(s)	61, 322, 493, 577
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	5 cut(s)	137, 144, 147, 430, 446
FokI	GGATG	2 cut(s)	122, 226
Fsp4HI	GCNGC	5 cut(s)	137, 144, 147, 430, 446
GluI	GCNGC	5 cut(s)	137, 144, 147, 430, 446
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	11, 359
HapII	CCGG	1 cut(s)	392
HgaI	GACGC	2 cut(s)	47, 134
Hin1II	CATG	4 cut(s)	65, 326, 497, 581
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	4 cut(s)	14, 29, 93, 208
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	5 cut(s)	167, 383, 481, 629, 638
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	34, 202
Hpy188III	TCNNGA	5 cut(s)	76, 275, 344, 410, 520
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	4 cut(s)	73, 89, 339, 613
HpyCH4V	TGCA	5 cut(s)	227, 239, 317, 432, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	3 cut(s)	206, 345, 622
Hsp92II	CATG	4 cut(s)	65, 326, 497, 581
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	6 cut(s)	45, 172, 271, 277, 412, 573
Lsp1109I	GCAGC	4 cut(s)	148, 155, 416, 457
LweI	GCATC	1 cut(s)	248
MaeIII	GTNAC	5 cut(s)	265, 371, 487, 527, 635
MalI	GATC	6 cut(s)	47, 174, 273, 279, 414, 575
MboI	GATC	6 cut(s)	45, 172, 271, 277, 412, 573
MboII	GAAGA	4 cut(s)	189, 296, 413, 429
MflI	RGATCY	2 cut(s)	45, 172
MluCI	AATT	5 cut(s)	116, 234, 327, 450, 555
MlyI	GAGTC	2 cut(s)	23, 217
MnlI	CCTC	4 cut(s)	126, 340, 527, 650
MseI	TTAA	1 cut(s)	119
MslI	CAYNNNNRTG	2 cut(s)	244, 297
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	5 cut(s)	98, 244, 356, 392, 393
Mva1269I	GAATGC	1 cut(s)	85
MvaI	CCWGG	3 cut(s)	98, 244, 356
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	356
NciI	CCSGG	2 cut(s)	392, 393
NcoI	CCATGG	1 cut(s)	493
NdeII	GATC	6 cut(s)	45, 172, 271, 277, 412, 573
NlaIII	CATG	4 cut(s)	65, 326, 497, 581
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	3 cut(s)	371, 487, 635
PceI	AGGCCT	1 cut(s)	359
PctI	GAATGC	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	14, 93
PkrI	GCNGC	5 cut(s)	138, 145, 148, 431, 447
PleI	GAGTC	2 cut(s)	23, 216
PpsI	GAGTC	2 cut(s)	23, 216
PshAI	GACNNNNGTC	1 cut(s)	207
Psp6I	CCWGG	3 cut(s)	96, 242, 354
PspEI	GGTNACC	2 cut(s)	487, 527
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	3 cut(s)	96, 242, 354
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	609
PsuI	RGATCY	2 cut(s)	45, 172
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
RseI	CAYNNNNRTG	2 cut(s)	244, 297
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	5 cut(s)	137, 144, 147, 430, 446
Sau3AI	GATC	6 cut(s)	45, 172, 271, 277, 412, 573
Sau96I	GGNCC	1 cut(s)	609
SchI	GAGTC	2 cut(s)	23, 217
ScrFI	CCNGG	5 cut(s)	98, 244, 356, 392, 393
SetI	ASST	7 cut(s)	207, 217, 248, 264, 301, 628, 642
SfaNI	GCATC	1 cut(s)	248
SinI	GGWCC	1 cut(s)	609
SmaI	CCCGGG	1 cut(s)	393
SmiMI	CAYNNNNRTG	2 cut(s)	244, 297
Sse9I	AATT	5 cut(s)	116, 234, 327, 450, 555
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	6 cut(s)	5, 41, 147, 249, 485, 500
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	5 cut(s)	96, 242, 354, 390, 391
StyI	CCWWGG	2 cut(s)	168, 493
TaaI	ACNGT	4 cut(s)	73, 89, 339, 613
TaqI	TCGA	3 cut(s)	114, 211, 572
TasI	AATT	5 cut(s)	116, 234, 327, 450, 555
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	14, 93
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	2 cut(s)	28, 156
TseFI	GTSAC	3 cut(s)	371, 487, 635
TseI	GCWGC	4 cut(s)	136, 143, 429, 445
Tsp45I	GTSAC	3 cut(s)	371, 487, 635
TspDTI	ATGAA	1 cut(s)	339
TspMI	CCCGGG	1 cut(s)	391
TspRI	CASTG	2 cut(s)	28, 156
VpaK11BI	GGWCC	1 cut(s)	609
XagI	CCTNNNNNAGG	1 cut(s)	521
XapI	RAATTY	1 cut(s)	327
XmaI	CCCGGG	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.