Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007293

Physical Location & Seq

Genomic Coordinates Forward (+)

8852205 .. 8854833

Gene Structure 2629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15610.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGACATCGTCGTTCCTAGTTGGGCCAGCCCAATTCTACATTTCCCCTGATCGGCCTGTAACAAACAACAACTGCACCCTTCAATTCTTTAGCCGAAGATTCAATTCAATTGGATTCGGATCGTCCAAGTTCACACGCAATAGCAGCCTCAAAGTTGCCATGGCCGATTCCGACTCCAATTCCAGCGGAGCAGATTATGCAGAGATCATGGTAATCCGTCATGGCGAAACCGCCTGGAATGCTGATGGTAGAATCCAGGGGCATCTGGATGTTGAATTGAATGATGCTGGGAGGAAGCAAGCAGCTGCAGTGGCCAATAGATTATCCAAGGATCCTAAAATCTCACTTGTATACTCATCTGACTTGAAACGAGCTTATGAGACTGCTCAAATAATTGCAGCCAGGTGCGGTGGGCTAAATGTTGTGACGGATCCCAATTTACGTGAAAGACACTTGGGTGATCTTCAAGGCCTTGTAATTAGAGAAGCGGCCAAACTTAGTCCCGAGGCCTACCGGGCCTTTAATTCTCACCGTACATGTCAAGATATTCCGGGTGGCGGAGAAAGTCTTGATCAACTTTATGACCGTTGCACAGCTGCATTGGAGAGAATTGGTGGTATGCACAAAGGAGAGCGAGTGGTTGTGGTCACTCATGGGGGTGTCATCAGATCACTGTACCAGCGGGCTTGCCCAAATGGCAGGTCCATAGGGAAAGTGACCAATACATCGATCAACACATTTCACTTGTATGATGAGGACAAATGGACCATAAAATCGTGGGGTGATGTTAGTCATATGAAGGAAACAGATTATCTGGAATCAGGTTTCGGTGGGGATGGAACTTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

284

Amino Acids

30.96

Weight (kDa)

7.69

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	69 - 183	4.1e-35	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50520
fragaria_vesca	FvH4_1g15610 FvH4_1g15610 FvH4_1g15610 FvH4_1g15610
malus_domestica	MD02G1168200.v1.1 MD15G1280300.v1.1 MD15G1280400.v1.1 MD15G1280500.v1.1
prunus_persica	Prupe.7G136800_v2.0.a1 Prupe.7G136800_v2.0.a1 Prupe.7G136900_v2.0.a1
pyrus_communis	pycom15g24320 pycom15g24330
rosa_chinensis	RchiOBHm_Chr2g0104951
rosa_laevigata	RLG00000017378
rosa_multiflora	Rmu_sc0001247.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138630
rosa_rugosa	Rorug02G0123900 Rorug02G0124000
rosa_samantha	Rh2AG174800 Rh2BG182600 Rh2CG179300 Rh2DG181200
rosa_wichuraiana	Rw2G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	690
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	6 cut(s)	186, 231, 408, 488, 558, 682
AclWI	GGATC	5 cut(s)	127, 326, 339, 425, 438
AcoI	YGGCCR	3 cut(s)	162, 312, 489
AfaI	GTAC	2 cut(s)	535, 677
AfiI	CCNNNNNNNGG	2 cut(s)	51, 557
AflIII	ACRYGT	1 cut(s)	536
AgsI	TTSAA	7 cut(s)	83, 103, 108, 275, 280, 367, 467
AjnI	CCWGG	3 cut(s)	233, 255, 401
AleI	CACNNNNGTG	1 cut(s)	456
AluBI	AGCT	3 cut(s)	305, 374, 596
AluI	AGCT	3 cut(s)	305, 374, 596
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	5 cut(s)	127, 326, 339, 425, 438
Ama87I	CYCGRG	1 cut(s)	503
AoxI	GGCC	8 cut(s)	23, 53, 162, 312, 469, 489, 507, 516
ApeKI	GCWGC	5 cut(s)	144, 302, 305, 398, 596
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
AspS9I	GGNCC	4 cut(s)	23, 516, 702, 765
AsuC2I	CCSGG	2 cut(s)	515, 552
AsuHPI	GGTGA	3 cut(s)	470, 521, 794
AvaI	CYCGRG	1 cut(s)	503
AvaII	GGWCC	2 cut(s)	702, 765
BalI	TGGCCA	1 cut(s)	314
BamHI	GGATCC	2 cut(s)	331, 430
BbvI	GCAGC	5 cut(s)	156, 292, 314, 410, 583
BccI	CCATC	2 cut(s)	239, 830
BciT130I	CCWGG	3 cut(s)	235, 257, 403
BclI	TGATCA	1 cut(s)	571
BcnI	CCSGG	2 cut(s)	515, 552
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	690
BglI	GCCNNNNNGGC	2 cut(s)	515, 696
BisI	GCNGC	6 cut(s)	145, 303, 306, 399, 489, 597
BlsI	GCNGC	6 cut(s)	146, 304, 307, 400, 490, 598
Bme1390I	CCNGG	5 cut(s)	235, 257, 403, 515, 552
Bme18I	GGWCC	2 cut(s)	702, 765
BmeT110I	CYCGRG	1 cut(s)	503
BmgT120I	GGNCC	4 cut(s)	23, 516, 702, 765
BmiI	GGNNCC	2 cut(s)	333, 432
BmrFI	CCNGG	5 cut(s)	235, 257, 403, 515, 552
BmsI	GCATC	2 cut(s)	271, 274
BpuMI	CCSGG	2 cut(s)	515, 552
Bsa29I	ATCGAT	1 cut(s)	728
BsaAI	YACGTR	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	118
BsaJI	CCNNGG	4 cut(s)	159, 256, 327, 504
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 557
Bse8I	GATNNNNATC	1 cut(s)	118
BseBI	CCWGG	3 cut(s)	235, 257, 403
BseCI	ATCGAT	1 cut(s)	728
BseDI	CCNNGG	4 cut(s)	159, 256, 327, 504
BseGI	GGATG	2 cut(s)	274, 841
BseJI	GATNNNNATC	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	51, 557
BseXI	GCAGC	5 cut(s)	156, 292, 314, 410, 583
BseYI	CCCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	58
BshFI	GGCC	8 cut(s)	25, 55, 164, 314, 471, 491, 509, 518
BshVI	ATCGAT	1 cut(s)	728
BsiHKCI	CYCGRG	1 cut(s)	503
BsiSI	CCGG	2 cut(s)	514, 551
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	2 cut(s)	51, 557
BsmAI	GTCTC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	486
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	8 cut(s)	25, 55, 164, 314, 471, 491, 509, 518
BsoBI	CYCGRG	1 cut(s)	503
Bsp143I	GATC	9 cut(s)	49, 119, 204, 331, 430, 460, 571, 668, 729
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	6 cut(s)	186, 231, 408, 488, 558, 682
BspANI	GGCC	8 cut(s)	25, 55, 164, 314, 471, 491, 509, 518
BspDI	ATCGAT	1 cut(s)	728
BspLI	GGNNCC	2 cut(s)	333, 432
BspMAI	CTGCAG	1 cut(s)	310
BspMI	ACCTGC	1 cut(s)	690
BspPI	GGATC	5 cut(s)	127, 326, 339, 425, 438
BssECI	CCNNGG	4 cut(s)	159, 256, 327, 504
BssMI	GATC	9 cut(s)	49, 119, 204, 331, 430, 460, 571, 668, 729
BssNAI	GTATAC	1 cut(s)	352
BssT1I	CCWWGG	2 cut(s)	159, 327
Bst1107I	GTATAC	1 cut(s)	352
Bst2UI	CCWGG	3 cut(s)	235, 257, 403
Bst4CI	ACNGT	3 cut(s)	533, 587, 675
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstBAI	YACGTR	1 cut(s)	443
BstC8I	GCNNGC	4 cut(s)	27, 300, 684, 688
BstDEI	CTNAG	1 cut(s)	497
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	274, 841
BstKTI	GATC	9 cut(s)	52, 122, 207, 334, 433, 463, 574, 671, 732
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	9 cut(s)	49, 119, 204, 331, 430, 460, 571, 668, 729
BstMWI	GCNNNNNNNGC	6 cut(s)	144, 197, 239, 311, 515, 696
BstNI	CCWGG	3 cut(s)	235, 257, 403
BstNSI	RCATGY	1 cut(s)	540
BstSCI	CCNGG	5 cut(s)	233, 255, 401, 513, 550
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	5 cut(s)	156, 292, 314, 410, 583
BstX2I	RGATCY	2 cut(s)	331, 430
BstYI	RGATCY	2 cut(s)	331, 430
BstZ17I	GTATAC	1 cut(s)	352
Bsu15I	ATCGAT	1 cut(s)	728
BsuRI	GGCC	8 cut(s)	25, 55, 164, 314, 471, 491, 509, 518
BsuTUI	ATCGAT	1 cut(s)	728
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	274, 841
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	2 cut(s)	315, 671
BveI	ACCTGC	1 cut(s)	690
Cac8I	GCNNGC	4 cut(s)	27, 300, 684, 688
Cfr13I	GGNCC	4 cut(s)	23, 516, 702, 765
ClaI	ATCGAT	1 cut(s)	728
Csp6I	GTAC	2 cut(s)	534, 676
CviAII	CATG	5 cut(s)	160, 208, 221, 537, 653
CviQI	GTAC	2 cut(s)	534, 676
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	9 cut(s)	51, 121, 206, 333, 432, 462, 573, 670, 731
DpnII	GATC	9 cut(s)	49, 119, 204, 331, 430, 460, 571, 668, 729
EaeI	YGGCCR	3 cut(s)	162, 312, 489
EciI	GGCGGA	1 cut(s)	573
Eco130I	CCWWGG	2 cut(s)	159, 327
Eco147I	AGGCCT	2 cut(s)	471, 509
Eco47I	GGWCC	2 cut(s)	702, 765
Eco88I	CYCGRG	1 cut(s)	503
EcoRII	CCWGG	3 cut(s)	233, 255, 401
EcoT14I	CCWWGG	2 cut(s)	159, 327
ErhI	CCWWGG	2 cut(s)	159, 327
FaeI	CATG	5 cut(s)	163, 211, 224, 540, 656
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	5 cut(s)	159, 207, 220, 536, 652
FauI	CCCGC	1 cut(s)	675
FauNDI	CATATG	1 cut(s)	795
FbaI	TGATCA	1 cut(s)	571
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	6 cut(s)	145, 303, 306, 399, 489, 597
FokI	GGATG	2 cut(s)	281, 848
Fsp4HI	GCNGC	6 cut(s)	145, 303, 306, 399, 489, 597
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	6 cut(s)	145, 303, 306, 399, 489, 597
GsaI	CCCAGC	1 cut(s)	291
HaeIII	GGCC	8 cut(s)	25, 55, 164, 314, 471, 491, 509, 518
HapII	CCGG	2 cut(s)	514, 551
Hin1II	CATG	5 cut(s)	163, 211, 224, 540, 656
HinfI	GANTC	6 cut(s)	99, 114, 167, 173, 252, 818
HpaII	CCGG	2 cut(s)	514, 551
HphI	GGTGA	3 cut(s)	470, 521, 794
Hpy166II	GTNNAC	2 cut(s)	132, 352
Hpy188I	TCNGA	4 cut(s)	119, 172, 361, 668
Hpy188III	TCNNGA	5 cut(s)	266, 503, 542, 569, 815
Hpy8I	GTNNAC	2 cut(s)	132, 352
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	89, 793
HpyCH4III	ACNGT	3 cut(s)	533, 587, 675
HpyCH4IV	ACGT	1 cut(s)	442
HpyCH4V	TGCA	7 cut(s)	75, 200, 308, 398, 591, 599, 622
HpyF10VI	GCNNNNNNNGC	6 cut(s)	144, 197, 239, 311, 515, 696
HpyF3I	CTNAG	1 cut(s)	497
HpySE526I	ACGT	1 cut(s)	442
Hsp92II	CATG	5 cut(s)	163, 211, 224, 540, 656
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	9 cut(s)	49, 119, 204, 331, 430, 460, 571, 668, 729
LmnI	GCTCC	1 cut(s)	188
Lsp1109I	GCAGC	5 cut(s)	156, 292, 314, 410, 583
LweI	GCATC	2 cut(s)	271, 274
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	442
MaeIII	GTNAC	4 cut(s)	58, 424, 646, 715
MalI	GATC	9 cut(s)	51, 121, 206, 333, 432, 462, 573, 670, 731
MboI	GATC	9 cut(s)	49, 119, 204, 331, 430, 460, 571, 668, 729
MboII	GAAGA	2 cut(s)	108, 455
MfeI	CAATTG	1 cut(s)	108
MflI	RGATCY	2 cut(s)	331, 430
MlsI	TGGCCA	1 cut(s)	314
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	4 cut(s)	158, 285, 499, 748
Mox20I	TGGCCA	1 cut(s)	314
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	1 cut(s)	522
MslI	CAYNNNNRTG	4 cut(s)	267, 456, 657, 747
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	4 cut(s)	186, 305, 596, 682
MspI	CCGG	2 cut(s)	514, 551
MspR9I	CCNGG	5 cut(s)	235, 257, 403, 515, 552
MunI	CAATTG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	3 cut(s)	235, 257, 403
MwoI	GCNNNNNNNGC	6 cut(s)	144, 197, 239, 311, 515, 696
NciI	CCSGG	2 cut(s)	515, 552
NcoI	CCATGG	1 cut(s)	159
NdeI	CATATG	1 cut(s)	795
NdeII	GATC	9 cut(s)	49, 119, 204, 331, 430, 460, 571, 668, 729
NlaIII	CATG	5 cut(s)	163, 211, 224, 540, 656
NlaIV	GGNNCC	2 cut(s)	333, 432
NmuCI	GTSAC	3 cut(s)	424, 646, 715
NspI	RCATGY	1 cut(s)	540
OliI	CACNNNNGTG	1 cut(s)	456
PceI	AGGCCT	2 cut(s)	471, 509
PciI	ACATGT	1 cut(s)	536
PctI	GAATGC	1 cut(s)	244
PfeI	GAWTC	5 cut(s)	99, 114, 167, 252, 818
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	6 cut(s)	146, 304, 307, 400, 490, 598
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	443
PscI	ACATGT	1 cut(s)	536
Psp6I	CCWGG	3 cut(s)	233, 255, 401
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	3 cut(s)	233, 255, 401
PspN4I	GGNNCC	2 cut(s)	333, 432
PspPI	GGNCC	4 cut(s)	23, 516, 702, 765
PstI	CTGCAG	1 cut(s)	310
PsuI	RGATCY	2 cut(s)	331, 430
PsyI	GACNNNGTC	1 cut(s)	7
PvuII	CAGCTG	2 cut(s)	305, 596
RsaI	GTAC	2 cut(s)	535, 677
RsaNI	GTAC	2 cut(s)	534, 676
RseI	CAYNNNNRTG	4 cut(s)	267, 456, 657, 747
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	6 cut(s)	145, 303, 306, 399, 489, 597
Sau3AI	GATC	9 cut(s)	49, 119, 204, 331, 430, 460, 571, 668, 729
Sau96I	GGNCC	4 cut(s)	23, 516, 702, 765
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	5 cut(s)	235, 257, 403, 515, 552
SetI	ASST	7 cut(s)	307, 376, 407, 445, 598, 704, 826
SfaNI	GCATC	2 cut(s)	271, 274
SfcI	CTRYAG	1 cut(s)	306
SfiI	GGCCNNNNNGGCC	1 cut(s)	515
SinI	GGWCC	2 cut(s)	702, 765
SmiMI	CAYNNNNRTG	4 cut(s)	267, 456, 657, 747
SseBI	AGGCCT	2 cut(s)	471, 509
SsiI	CCGC	6 cut(s)	186, 231, 408, 488, 558, 682
SspMI	CTAG	1 cut(s)	17
StuI	AGGCCT	2 cut(s)	471, 509
StyD4I	CCNGG	5 cut(s)	233, 255, 401, 513, 550
StyI	CCWWGG	2 cut(s)	159, 327
TaaI	ACNGT	3 cut(s)	533, 587, 675
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	1 cut(s)	728
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	5 cut(s)	99, 114, 167, 252, 818
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	2 cut(s)	315, 678
TseFI	GTSAC	3 cut(s)	424, 646, 715
TseI	GCWGC	5 cut(s)	144, 302, 305, 398, 596
Tsp45I	GTSAC	3 cut(s)	424, 646, 715
TspDTI	ATGAA	1 cut(s)	812
TspGWI	ACGGA	2 cut(s)	206, 443
TspRI	CASTG	2 cut(s)	315, 678
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	2 cut(s)	702, 765
XceI	RCATGY	1 cut(s)	540
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.