Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007293

Physical Location & Seq

Genomic Coordinates Forward (+)

15971296 .. 15974868

Gene Structure 3573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG181200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCCGATTCCGACTCCGACTCCGATTCCAGAGGTGCAGATTATGCAGAGATCATGGTAGTGCGTCATGGCGAAACGGCCTGGAACGCCGATGGTAGAATCCAGGGACATCTGGATGTTGAATTGAATGATGCTGGGAGGCAGCAAGCAGCGGTAGTGGGCAATAAATTATCCAAGGATCCTAAAATCTCTCTTGTATACTCGTCTGACTTGAAACGAGCTTATGAGACTGCTCAAATAATCGCAGCCAGGTGCGGTGGGCTAAATGTTGTAACAGATCCTGATTTACGAGAAAGACACTTGGGCGATCTTCAAGGCCTTGTATTTAGAGAAGCGGCCAAACTTAGTTCTAAGGCCTACCAGGCCTTTACTTCTCACCGCACATGTCAAGATATTCCAGGTGGCGGAGAAAGTCTTGATCAACTTTATGACCGCTGCACATCTGCATTGGAGAGAATTGGTGGTAAGCACAAAGGAGAGCGAGTAGTTGTGGTCACTCATGGGGGTGTCATCAGATCACTGTACCAGCGGGCTTGCCCAAATGGCAGTTCCATAGGGAAAGTGGCCAATACATCGATCAACACATTTCACTTGTATGATGAGGACAAATGGACCATAAAATCCTGGGGTGATATTAGTCATCTGAAGGAAACAGATTATCTGGAATCAGGTTTCGGAGGGGACACAACTTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

232

Amino Acids

25.23

Weight (kDa)

5.75

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	18 - 211	2.1e-56	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50520
fragaria_vesca	FvH4_1g15610 FvH4_1g15610 FvH4_1g15610 FvH4_1g15610
malus_domestica	MD02G1168200.v1.1 MD15G1280300.v1.1 MD15G1280400.v1.1 MD15G1280500.v1.1
prunus_persica	Prupe.7G136800_v2.0.a1 Prupe.7G136800_v2.0.a1 Prupe.7G136900_v2.0.a1
pyrus_communis	pycom15g24320 pycom15g24330
rosa_chinensis	RchiOBHm_Chr2g0104951
rosa_laevigata	RLG00000017378
rosa_multiflora	Rmu_sc0001247.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138630
rosa_rugosa	Rorug02G0123900 Rorug02G0124000
rosa_samantha	Rh2AG174800 Rh2BG182600 Rh2CG179300 Rh2DG181200
rosa_wichuraiana	Rw2G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	7 cut(s)	152, 255, 335, 379, 405, 433, 529
AclWI	GGATC	3 cut(s)	173, 186, 272
AcoI	YGGCCR	3 cut(s)	3, 336, 564
AcuI	CTGAAG	1 cut(s)	665
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	1 cut(s)	404
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	4 cut(s)	122, 127, 214, 314
AjnI	CCWGG	6 cut(s)	80, 102, 248, 360, 397, 623
AjuI	GAANNNNNNNTTGG	2 cut(s)	532, 564
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	3 cut(s)	173, 186, 272
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	7 cut(s)	3, 78, 316, 336, 354, 363, 564
ApeKI	GCWGC	4 cut(s)	142, 149, 245, 435
AspS9I	GGNCC	1 cut(s)	612
AsuHPI	GGTGA	2 cut(s)	368, 641
AvaII	GGWCC	1 cut(s)	612
BalI	TGGCCA	1 cut(s)	566
BamHI	GGATCC	1 cut(s)	178
BbvI	GCAGC	4 cut(s)	154, 161, 257, 422
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	6 cut(s)	82, 104, 250, 362, 399, 625
BclI	TGATCA	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	221
BglI	GCCNNNNNGGC	2 cut(s)	362, 543
BisI	GCNGC	5 cut(s)	143, 150, 246, 336, 436
BlsI	GCNGC	5 cut(s)	144, 151, 247, 337, 437
Bme1390I	CCNGG	6 cut(s)	82, 104, 250, 362, 399, 625
Bme18I	GGWCC	1 cut(s)	612
BmgT120I	GGNCC	1 cut(s)	612
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	6 cut(s)	82, 104, 250, 362, 399, 625
BmsI	GCATC	1 cut(s)	121
Bsa29I	ATCGAT	1 cut(s)	575
BsaJI	CCNNGG	3 cut(s)	103, 174, 624
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 468, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
BseBI	CCWGG	6 cut(s)	82, 104, 250, 362, 399, 625
BseCI	ATCGAT	1 cut(s)	575
BseDI	CCNNGG	3 cut(s)	103, 174, 624
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseXI	GCAGC	4 cut(s)	154, 161, 257, 422
BseYI	CCCAGC	1 cut(s)	134
BsgI	GTGCAG	2 cut(s)	57, 421
BshFI	GGCC	7 cut(s)	5, 80, 318, 338, 356, 365, 566
BshVI	ATCGAT	1 cut(s)	575
BslFI	GGGAC	2 cut(s)	120, 695
BslI	CCNNNNNNNGG	1 cut(s)	404
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	2 cut(s)	120, 695
BsnI	GGCC	7 cut(s)	5, 80, 318, 338, 356, 365, 566
Bsp143I	GATC	7 cut(s)	51, 178, 277, 307, 418, 515, 576
BspACI	CCGC	7 cut(s)	152, 255, 335, 379, 405, 433, 529
BspANI	GGCC	7 cut(s)	5, 80, 318, 338, 356, 365, 566
BspDI	ATCGAT	1 cut(s)	575
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	3 cut(s)	173, 186, 272
BssECI	CCNNGG	3 cut(s)	103, 174, 624
BssMI	GATC	7 cut(s)	51, 178, 277, 307, 418, 515, 576
BssNAI	GTATAC	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	174
Bst1107I	GTATAC	1 cut(s)	199
Bst2UI	CCWGG	6 cut(s)	82, 104, 250, 362, 399, 625
Bst4CI	ACNGT	1 cut(s)	522
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstC8I	GCNNGC	3 cut(s)	147, 531, 535
BstDEI	CTNAG	2 cut(s)	344, 351
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	7 cut(s)	54, 181, 280, 310, 421, 518, 579
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	7 cut(s)	51, 178, 277, 307, 418, 515, 576
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 86, 362, 543
BstNI	CCWGG	6 cut(s)	82, 104, 250, 362, 399, 625
BstNSI	RCATGY	1 cut(s)	387
BstSCI	CCNGG	6 cut(s)	80, 102, 248, 360, 397, 623
BstV1I	GCAGC	4 cut(s)	154, 161, 257, 422
BstX2I	RGATCY	2 cut(s)	178, 277
BstYI	RGATCY	2 cut(s)	178, 277
BstZ17I	GTATAC	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	575
BsuRI	GGCC	7 cut(s)	5, 80, 318, 338, 356, 365, 566
BsuTUI	ATCGAT	1 cut(s)	575
BtsCI	GGATG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	518
Cac8I	GCNNGC	3 cut(s)	147, 531, 535
CaiI	CAGNNNCTG	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	612
ClaI	ATCGAT	1 cut(s)	575
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	4 cut(s)	55, 68, 384, 500
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	2 cut(s)	344, 351
DpnI	GATC	7 cut(s)	53, 180, 279, 309, 420, 517, 578
DpnII	GATC	7 cut(s)	51, 178, 277, 307, 418, 515, 576
EaeI	YGGCCR	3 cut(s)	3, 336, 564
EciI	GGCGGA	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	174
Eco147I	AGGCCT	3 cut(s)	318, 356, 365
Eco47I	GGWCC	1 cut(s)	612
Eco57I	CTGAAG	1 cut(s)	665
EcoRII	CCWGG	6 cut(s)	80, 102, 248, 360, 397, 623
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	4 cut(s)	58, 71, 387, 503
FaqI	GGGAC	2 cut(s)	120, 695
FatI	CATG	4 cut(s)	54, 67, 383, 499
FauI	CCCGC	1 cut(s)	522
FbaI	TGATCA	1 cut(s)	418
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	5 cut(s)	143, 150, 246, 336, 436
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	5 cut(s)	143, 150, 246, 336, 436
GluI	GCNGC	5 cut(s)	143, 150, 246, 336, 436
GsaI	CCCAGC	1 cut(s)	138
HaeIII	GGCC	7 cut(s)	5, 80, 318, 338, 356, 365, 566
HgaI	GACGC	1 cut(s)	53
Hin1II	CATG	4 cut(s)	58, 71, 387, 503
HinfI	GANTC	6 cut(s)	8, 14, 20, 26, 99, 665
HphI	GGTGA	2 cut(s)	368, 641
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	7 cut(s)	13, 19, 25, 208, 515, 645, 677
Hpy188III	TCNNGA	6 cut(s)	30, 113, 281, 389, 416, 662
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	640
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4V	TGCA	4 cut(s)	38, 47, 438, 446
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 86, 362, 543
HpyF3I	CTNAG	2 cut(s)	344, 351
Hsp92II	CATG	4 cut(s)	58, 71, 387, 503
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	7 cut(s)	51, 178, 277, 307, 418, 515, 576
Lsp1109I	GCAGC	4 cut(s)	154, 161, 257, 422
LweI	GCATC	1 cut(s)	121
MaeIII	GTNAC	2 cut(s)	271, 493
MalI	GATC	7 cut(s)	53, 180, 279, 309, 420, 517, 578
MboI	GATC	7 cut(s)	51, 178, 277, 307, 418, 515, 576
MboII	GAAGA	1 cut(s)	302
MflI	RGATCY	2 cut(s)	178, 277
MlsI	TGGCCA	1 cut(s)	566
MluCI	AATT	3 cut(s)	122, 167, 456
MluNI	TGGCCA	1 cut(s)	566
MlyI	GAGTC	2 cut(s)	8, 14
MmeI	TCCRAC	2 cut(s)	36, 42
MnlI	CCTC	4 cut(s)	26, 132, 595, 671
Mox20I	TGGCCA	1 cut(s)	566
MscI	TGGCCA	1 cut(s)	566
MslI	CAYNNNNRTG	4 cut(s)	59, 114, 504, 594
Msp20I	TGGCCA	1 cut(s)	566
MspA1I	CMGCKG	3 cut(s)	152, 435, 529
MspR9I	CCNGG	6 cut(s)	82, 104, 250, 362, 399, 625
MvaI	CCWGG	6 cut(s)	82, 104, 250, 362, 399, 625
MwoI	GCNNNNNNNGC	4 cut(s)	44, 86, 362, 543
NdeII	GATC	7 cut(s)	51, 178, 277, 307, 418, 515, 576
NlaIII	CATG	4 cut(s)	58, 71, 387, 503
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	493
NspI	RCATGY	1 cut(s)	387
PceI	AGGCCT	3 cut(s)	318, 356, 365
PciI	ACATGT	1 cut(s)	383
PfeI	GAWTC	4 cut(s)	8, 26, 99, 665
PkrI	GCNGC	5 cut(s)	144, 151, 247, 337, 437
PleI	GAGTC	2 cut(s)	8, 14
PpsI	GAGTC	2 cut(s)	8, 14
PscI	ACATGT	1 cut(s)	383
Psp6I	CCWGG	6 cut(s)	80, 102, 248, 360, 397, 623
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	6 cut(s)	80, 102, 248, 360, 397, 623
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	612
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	2 cut(s)	178, 277
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
RseI	CAYNNNNRTG	4 cut(s)	59, 114, 504, 594
SatI	GCNGC	5 cut(s)	143, 150, 246, 336, 436
Sau3AI	GATC	7 cut(s)	51, 178, 277, 307, 418, 515, 576
Sau96I	GGNCC	1 cut(s)	612
SchI	GAGTC	2 cut(s)	8, 14
ScrFI	CCNGG	6 cut(s)	82, 104, 250, 362, 399, 625
SetI	ASST	5 cut(s)	37, 223, 254, 403, 673
SfaNI	GCATC	1 cut(s)	121
SfiI	GGCCNNNNNGGCC	1 cut(s)	362
SinI	GGWCC	1 cut(s)	612
SmiMI	CAYNNNNRTG	4 cut(s)	59, 114, 504, 594
Sse9I	AATT	3 cut(s)	122, 167, 456
SseBI	AGGCCT	3 cut(s)	318, 356, 365
SsiI	CCGC	7 cut(s)	152, 255, 335, 379, 405, 433, 529
StuI	AGGCCT	3 cut(s)	318, 356, 365
StyD4I	CCNGG	6 cut(s)	80, 102, 248, 360, 397, 623
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	522
TaqI	TCGA	1 cut(s)	575
TasI	AATT	3 cut(s)	122, 167, 456
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	4 cut(s)	8, 26, 99, 665
TscAI	CASTG	1 cut(s)	525
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	4 cut(s)	142, 149, 245, 435
Tsp45I	GTSAC	1 cut(s)	493
TspRI	CASTG	1 cut(s)	525
VpaK11BI	GGWCC	1 cut(s)	612
XceI	RCATGY	1 cut(s)	387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XmiI	GTMKAC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.