Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007293

Physical Location & Seq

Genomic Coordinates Forward (+)

18518570 .. 18520770

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g24320.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAGCACTCATAACCCTCCTCTCACTTTCACTCAACCCTTTAGCGCCTCAGGGAGCTCCCAGCTCAGCGTCGGTACGGCTGCGGCTTCAGTTCCCGATTCATCCATGGCGGAGGCCGATTCCAGCAGTGTTGACTCGGATTACGCGGAGATCATTGTAGTGCGTCATGGCGAAACGGTCTGGAATGCTGACCGTAGAATCCAGGGGACTTTGGATGTCGAATTAAATGACGCTGGGAGGCAGCAAGCAGCTGCACTGGGTGATAGATTATCCAAGGATCCCAAAATCTCCCTTGTATATTCTTCAGACCTGAGTCGAGCTTATGAGACTGCACAGATAATTGCATCCAGGTGTGGTGGGCTAAAGGTTGTTTCCGATCCTGATCTACGAGGAAGGCATAAAGGTGTTCTTCAAGGACTTGCATACCATGAAATTCCCAAACTGTATCCTGAGGCTCACCAGGCCTTTTTATCTGGTGACACAAGTAAAGATTTCCCGGGTGCTGAAGAGAGTCTTGATCAACATTATCAACGCTGCACATCTTCGTTGCAGCGAATTGGCAATAAACACAAAGGAGAGCGAGTAGTTGCGGTCACCCATGGGGGTGTCATACATACACTCCTCAGGAAGGGTTACCCAAATGACGATTTTATTGGCAAAATTATACCCAATACATCGATCCATGTATTTCACTTGTACGATGACGAAAAATGGACCGTAAAATCCTTGGGTGATGTTAATCACCTCAACCAAACTGATTTTCTGCAATCTGCTCTCGGTGGGGACGAAAAATCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

267

Amino Acids

28.88

Weight (kDa)

5.81

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50520
fragaria_vesca	FvH4_1g15610 FvH4_1g15610 FvH4_1g15610 FvH4_1g15610
malus_domestica	MD02G1168200.v1.1 MD15G1280300.v1.1 MD15G1280400.v1.1 MD15G1280500.v1.1
prunus_persica	Prupe.7G136800_v2.0.a1 Prupe.7G136800_v2.0.a1 Prupe.7G136900_v2.0.a1
pyrus_communis	pycom15g24320 pycom15g24330
rosa_chinensis	RchiOBHm_Chr2g0104951
rosa_laevigata	RLG00000017378
rosa_multiflora	Rmu_sc0001247.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138630
rosa_rugosa	Rorug02G0123900 Rorug02G0124000
rosa_samantha	Rh2AG174800 Rh2BG182600 Rh2CG179300 Rh2DG181200
rosa_wichuraiana	Rw2G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	146
AciI	CCGC	4 cut(s)	83, 110, 146, 590
AclWI	GGATC	4 cut(s)	272, 285, 371, 673
AcsI	RAATTY	1 cut(s)	432
AcuI	CTGAAG	3 cut(s)	72, 288, 525
AdeI	CACNNNGTG	1 cut(s)	260
AfaI	GTAC	2 cut(s)	76, 698
AfiI	CCNNNNNNNGG	1 cut(s)	628
AgsI	TTSAA	1 cut(s)	413
AjnI	CCWGG	3 cut(s)	201, 347, 459
AjuI	GAANNNNNNNTTGG	2 cut(s)	744, 776
AluBI	AGCT	4 cut(s)	57, 64, 251, 320
AluI	AGCT	4 cut(s)	57, 64, 251, 320
Alw21I	GWGCWC	2 cut(s)	8, 59
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	4 cut(s)	272, 285, 371, 673
Ama87I	CYCGRG	1 cut(s)	496
AoxI	GGCC	2 cut(s)	114, 462
ApeKI	GCWGC	6 cut(s)	80, 241, 248, 251, 534, 550
ApoI	RAATTY	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	714
AsuC2I	CCSGG	2 cut(s)	497, 498
AsuHPI	GGTGA	6 cut(s)	272, 449, 488, 586, 734, 743
AvaI	CYCGRG	1 cut(s)	496
AvaII	GGWCC	1 cut(s)	714
AxyI	CCTNAGG	3 cut(s)	49, 450, 623
BamHI	GGATCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	59
Bbv12I	GWGCWC	2 cut(s)	8, 59
BbvI	GCAGC	6 cut(s)	67, 238, 253, 260, 521, 562
BceAI	ACGGC	1 cut(s)	93
BcgI	CGANNNNNNTGC	1 cut(s)	776
BciT130I	CCWGG	3 cut(s)	203, 349, 461
BciVI	GTATCC	1 cut(s)	456
BclI	TGATCA	1 cut(s)	517
BcnI	CCSGG	2 cut(s)	497, 498
BcoDI	GTCTC	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	456
BisI	GCNGC	7 cut(s)	81, 84, 242, 249, 252, 535, 551
BlpI	GCTNAGC	1 cut(s)	65
BlsI	GCNGC	7 cut(s)	82, 85, 243, 250, 253, 536, 552
Bme1390I	CCNGG	5 cut(s)	203, 349, 461, 497, 498
Bme18I	GGWCC	1 cut(s)	714
BmeT110I	CYCGRG	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	714
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	5 cut(s)	203, 349, 461, 497, 498
BmrI	ACTGGG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	353
BmuI	ACTGGG	1 cut(s)	266
BoxI	GACNNNNGTC	1 cut(s)	312
Bpu1102I	GCTNAGC	1 cut(s)	65
BpuMI	CCSGG	2 cut(s)	497, 498
Bsa29I	ATCGAT	1 cut(s)	677
BsaBI	GATNNNNATC	2 cut(s)	381, 738
BsaJI	CCNNGG	6 cut(s)	105, 202, 273, 496, 598, 726
BsaXI	ACNNNNNCTCC	4 cut(s)	567, 597, 603, 633
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse1I	ACTGG	1 cut(s)	261
Bse21I	CCTNAGG	3 cut(s)	49, 450, 623
Bse8I	GATNNNNATC	2 cut(s)	381, 738
BseBI	CCWGG	3 cut(s)	203, 349, 461
BseCI	ATCGAT	1 cut(s)	677
BseDI	CCNNGG	6 cut(s)	105, 202, 273, 496, 598, 726
BseGI	GGATG	3 cut(s)	101, 220, 344
BseJI	GATNNNNATC	2 cut(s)	381, 738
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMII	CTCAG	5 cut(s)	63, 79, 302, 441, 637
BseNI	ACTGG	1 cut(s)	261
BseRI	GAGGAG	2 cut(s)	9, 611
BseXI	GCAGC	6 cut(s)	67, 238, 253, 260, 521, 562
BseYI	CCCAGC	2 cut(s)	60, 233
BsgI	GTGCAG	3 cut(s)	237, 315, 520
Bsh1236I	CGCG	1 cut(s)	146
BshFI	GGCC	2 cut(s)	116, 464
BshVI	ATCGAT	1 cut(s)	677
BsiHKAI	GWGCWC	2 cut(s)	8, 59
BsiHKCI	CYCGRG	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	497
BslFI	GGGAC	2 cut(s)	220, 797
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	1 cut(s)	320
BsmFI	GGGAC	2 cut(s)	220, 797
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	116, 464
BsoBI	CYCGRG	1 cut(s)	496
Bsp1286I	GDGCHC	2 cut(s)	8, 59
Bsp143I	GATC	6 cut(s)	150, 277, 376, 382, 517, 678
Bsp1720I	GCTNAGC	1 cut(s)	65
Bsp19I	CCATGG	2 cut(s)	105, 598
BspACI	CCGC	4 cut(s)	83, 110, 146, 590
BspANI	GGCC	2 cut(s)	116, 464
BspCNI	CTCAG	5 cut(s)	62, 78, 303, 442, 636
BspDI	ATCGAT	1 cut(s)	677
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	4 cut(s)	272, 285, 371, 673
BsrI	ACTGG	1 cut(s)	261
BssECI	CCNNGG	6 cut(s)	105, 202, 273, 496, 598, 726
BssMI	GATC	6 cut(s)	150, 277, 376, 382, 517, 678
BssT1I	CCWWGG	4 cut(s)	105, 273, 598, 726
Bst2UI	CCWGG	3 cut(s)	203, 349, 461
Bst4CI	ACNGT	4 cut(s)	178, 194, 444, 718
Bst6I	CTCTTC	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	6 cut(s)	49, 65, 311, 450, 623, 798
BstDSI	CCRYGG	2 cut(s)	105, 598
BstEII	GGTNACC	2 cut(s)	592, 632
BstENI	CCTNNNNNAGG	1 cut(s)	626
BstF5I	GGATG	3 cut(s)	101, 220, 344
BstFNI	CGCG	1 cut(s)	146
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	6 cut(s)	153, 280, 379, 385, 520, 681
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	6 cut(s)	150, 277, 376, 382, 517, 678
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	3 cut(s)	203, 349, 461
BstPAI	GACNNNNGTC	1 cut(s)	312
BstPI	GGTNACC	2 cut(s)	592, 632
BstSCI	CCNGG	5 cut(s)	201, 347, 459, 495, 496
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	6 cut(s)	67, 238, 253, 260, 521, 562
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
Bsu15I	ATCGAT	1 cut(s)	677
Bsu36I	CCTNAGG	3 cut(s)	49, 450, 623
BsuI	GTATCC	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	116, 464
BsuTUI	ATCGAT	1 cut(s)	677
BtgI	CCRYGG	2 cut(s)	105, 598
BtsCI	GGATG	3 cut(s)	101, 220, 344
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	2 cut(s)	133, 254
Cac8I	GCNNGC	1 cut(s)	246
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	714
Cfr9I	CCCGGG	1 cut(s)	496
ClaI	ATCGAT	1 cut(s)	677
CseI	GACGC	3 cut(s)	58, 152, 239
Csp6I	GTAC	2 cut(s)	75, 697
CviAII	CATG	5 cut(s)	106, 167, 428, 599, 683
CviQI	GTAC	2 cut(s)	75, 697
DdeI	CTNAG	6 cut(s)	49, 65, 311, 450, 623, 798
DpnI	GATC	6 cut(s)	152, 279, 378, 384, 519, 680
DpnII	GATC	6 cut(s)	150, 277, 376, 382, 517, 678
DraIII	CACNNNGTG	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
EciI	GGCGGA	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	57
Eco130I	CCWWGG	4 cut(s)	105, 273, 598, 726
Eco147I	AGGCCT	1 cut(s)	464
Eco24I	GRGCYC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	714
Eco53kI	GAGCTC	1 cut(s)	57
Eco57I	CTGAAG	3 cut(s)	72, 288, 525
Eco81I	CCTNAGG	3 cut(s)	49, 450, 623
Eco88I	CYCGRG	1 cut(s)	496
Eco91I	GGTNACC	2 cut(s)	592, 632
EcoICRI	GAGCTC	1 cut(s)	57
EcoNI	CCTNNNNNAGG	1 cut(s)	626
EcoO65I	GGTNACC	2 cut(s)	592, 632
EcoRII	CCWGG	3 cut(s)	201, 347, 459
EcoT14I	CCWWGG	4 cut(s)	105, 273, 598, 726
EcoT38I	GRGCYC	1 cut(s)	59
ErhI	CCWWGG	4 cut(s)	105, 273, 598, 726
FaeI	CATG	5 cut(s)	109, 170, 431, 602, 686
FalI	AAGNNNNNCTT	4 cut(s)	393, 425, 498, 530
FaqI	GGGAC	2 cut(s)	220, 797
FatI	CATG	5 cut(s)	105, 166, 427, 598, 682
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	7 cut(s)	81, 84, 242, 249, 252, 535, 551
FokI	GGATG	3 cut(s)	88, 227, 331
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	7 cut(s)	81, 84, 242, 249, 252, 535, 551
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	7 cut(s)	81, 84, 242, 249, 252, 535, 551
GsaI	CCCAGC	2 cut(s)	64, 237
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	116, 464
HapII	CCGG	1 cut(s)	497
HgaI	GACGC	3 cut(s)	58, 152, 239
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	5 cut(s)	109, 170, 431, 602, 686
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	6 cut(s)	98, 119, 134, 198, 313, 511
HpaII	CCGG	1 cut(s)	497
HphI	GGTGA	6 cut(s)	272, 449, 488, 586, 734, 743
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	139, 307, 376
Hpy188III	TCNNGA	6 cut(s)	95, 181, 380, 449, 515, 625
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	387, 622
HpyCH4III	ACNGT	4 cut(s)	178, 194, 444, 718
HpyCH4V	TGCA	7 cut(s)	254, 332, 344, 422, 537, 550, 766
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	6 cut(s)	49, 65, 311, 450, 623, 798
Hsp92II	CATG	5 cut(s)	109, 170, 431, 602, 686
HspAI	GCGC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	6 cut(s)	150, 277, 376, 382, 517, 678
LmnI	GCTCC	2 cut(s)	54, 62
Lsp1109I	GCAGC	6 cut(s)	67, 238, 253, 260, 521, 562
LweI	GCATC	1 cut(s)	353
MaeIII	GTNAC	3 cut(s)	476, 592, 632
MalI	GATC	6 cut(s)	152, 279, 378, 384, 519, 680
MboI	GATC	6 cut(s)	150, 277, 376, 382, 517, 678
MboII	GAAGA	4 cut(s)	294, 401, 518, 534
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	8, 59
MluCI	AATT	5 cut(s)	221, 339, 432, 555, 660
MlyI	GAGTC	3 cut(s)	128, 322, 520
MnlI	CCTC	9 cut(s)	27, 30, 58, 106, 231, 383, 445, 632, 755
MseI	TTAA	2 cut(s)	224, 738
MslI	CAYNNNNRTG	4 cut(s)	158, 349, 402, 603
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	1 cut(s)	497
MspR9I	CCNGG	5 cut(s)	203, 349, 461, 497, 498
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	3 cut(s)	203, 349, 461
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	461
NciI	CCSGG	2 cut(s)	497, 498
NcoI	CCATGG	2 cut(s)	105, 598
NdeII	GATC	6 cut(s)	150, 277, 376, 382, 517, 678
NlaIII	CATG	5 cut(s)	109, 170, 431, 602, 686
NlaIV	GGNNCC	1 cut(s)	279
NmuCI	GTSAC	2 cut(s)	476, 592
PceI	AGGCCT	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	1 cut(s)	783
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	3 cut(s)	98, 119, 198
PkrI	GCNGC	7 cut(s)	82, 85, 243, 250, 253, 536, 552
PleI	GAGTC	3 cut(s)	128, 321, 519
PpsI	GAGTC	3 cut(s)	128, 321, 519
PshAI	GACNNNNGTC	1 cut(s)	312
Psp124BI	GAGCTC	1 cut(s)	59
Psp6I	CCWGG	3 cut(s)	201, 347, 459
PspEI	GGTNACC	2 cut(s)	592, 632
PspFI	CCCAGC	2 cut(s)	60, 233
PspGI	CCWGG	3 cut(s)	201, 347, 459
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	714
PsuI	RGATCY	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	2 cut(s)	76, 698
RsaNI	GTAC	2 cut(s)	75, 697
RseI	CAYNNNNRTG	4 cut(s)	158, 349, 402, 603
SacI	GAGCTC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	224, 738
SatI	GCNGC	7 cut(s)	81, 84, 242, 249, 252, 535, 551
Sau3AI	GATC	6 cut(s)	150, 277, 376, 382, 517, 678
Sau96I	GGNCC	1 cut(s)	714
SchI	GAGTC	3 cut(s)	128, 322, 520
ScrFI	CCNGG	5 cut(s)	203, 349, 461, 497, 498
SduI	GDGCHC	2 cut(s)	8, 59
SetI	ASST	9 cut(s)	59, 66, 253, 312, 322, 353, 369, 406, 747
SfaNI	GCATC	1 cut(s)	353
SinI	GGWCC	1 cut(s)	714
SmaI	CCCGGG	1 cut(s)	498
SmiMI	CAYNNNNRTG	4 cut(s)	158, 349, 402, 603
Sse9I	AATT	5 cut(s)	221, 339, 432, 555, 660
SseBI	AGGCCT	1 cut(s)	464
SsiI	CCGC	4 cut(s)	83, 110, 146, 590
SstI	GAGCTC	1 cut(s)	59
StuI	AGGCCT	1 cut(s)	464
StyD4I	CCNGG	5 cut(s)	201, 347, 459, 495, 496
StyI	CCWWGG	4 cut(s)	105, 273, 598, 726
TaaI	ACNGT	4 cut(s)	178, 194, 444, 718
TaqI	TCGA	3 cut(s)	219, 316, 677
TasI	AATT	5 cut(s)	221, 339, 432, 555, 660
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	3 cut(s)	98, 119, 198
Tru1I	TTAA	2 cut(s)	224, 738
Tru9I	TTAA	2 cut(s)	224, 738
TscAI	CASTG	2 cut(s)	133, 261
TseFI	GTSAC	2 cut(s)	476, 592
TseI	GCWGC	6 cut(s)	80, 241, 248, 251, 534, 550
Tsp45I	GTSAC	2 cut(s)	476, 592
TspDTI	ATGAA	2 cut(s)	90, 444
TspMI	CCCGGG	1 cut(s)	496
TspRI	CASTG	2 cut(s)	133, 261
VpaK11BI	GGWCC	1 cut(s)	714
XagI	CCTNNNNNAGG	1 cut(s)	626
XapI	RAATTY	1 cut(s)	432
XmaI	CCCGGG	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.