Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007293

Physical Location & Seq

Genomic Coordinates Forward (+)

24973022 .. 24976553

Gene Structure 3532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1280500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCGGACGCCGATTCCAGCTGTTTGAGTTCGGATTACGCGGAGATCATCGCAGTTCGCCACGGCGAAACGGCCTGGAACGCTGACCGTAGAATACAGGGTCATTTGGATGTTGAGTTAAACGATGCTGGGAGGCAGCAAGCAGCTGCAGTGGGTAATAGATTATCCAAGGATCCCAAAATCTCCCTTGTATATTCTTCTGACCTGAGTCGAGCTTATGAGACTGCACAGATAATTGCATCCAAGTGTGGTGGGCTAACGGTTGTAACAGATCCTGATTTACGAGAAAGGCATTTAGGTGATCTTCAAGGACTTGTTTACCATGAACTTGCCAAACTTAAACCTCAGGCTCACCAGGCCTTTTTATCTCGTGAGACATGTCAAGAGATCCCAGGGGGTGGAGAAAGTCTTGATCAACTTCATCGACGCTGCACATCTTCATTGCAGCGAATTGGCAATAAACACAAAGGAGAGCGAGTAGTTGTGGTCACTCATGGGGGGGTCATCAGAACACTCCTCAAGAAAGGTTACCCAAATGGCAAGTCTATAGGCAAAGTAGCCAATACATCGATCCACATATTTCACTTGTACGATGACGAGAAATGGGCCGTAAAATCCTCGGGTGATGTTAGTCATCTTAACCAAACAGATTTTCTGCAATCAAATTTCGGTGGTGACGAAAAATCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

231

Amino Acids

25.14

Weight (kDa)

6.83

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	16 - 206	3.3e-55	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50520
fragaria_vesca	FvH4_1g15610 FvH4_1g15610 FvH4_1g15610 FvH4_1g15610
malus_domestica	MD02G1168200.v1.1 MD15G1280300.v1.1 MD15G1280400.v1.1 MD15G1280500.v1.1
prunus_persica	Prupe.7G136800_v2.0.a1 Prupe.7G136800_v2.0.a1 Prupe.7G136900_v2.0.a1
pyrus_communis	pycom15g24320 pycom15g24330
rosa_chinensis	RchiOBHm_Chr2g0104951
rosa_laevigata	RLG00000017378
rosa_multiflora	Rmu_sc0001247.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138630
rosa_rugosa	Rorug02G0123900 Rorug02G0124000
rosa_samantha	Rh2AG174800 Rh2BG182600 Rh2CG179300 Rh2DG181200
rosa_wichuraiana	Rw2G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	398
AccII	CGCG	1 cut(s)	41
AciI	CCGC	2 cut(s)	5, 41
AclWI	GGATC	5 cut(s)	167, 180, 266, 382, 565
AcsI	RAATTY	1 cut(s)	664
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	1 cut(s)	590
AfiI	CCNNNNNNNGG	1 cut(s)	398
AflIII	ACRYGT	1 cut(s)	377
AgsI	TTSAA	1 cut(s)	308
AjnI	CCWGG	3 cut(s)	74, 354, 391
AjuI	GAANNNNNNNTTGG	2 cut(s)	636, 668
AluBI	AGCT	3 cut(s)	21, 146, 215
AluI	AGCT	3 cut(s)	21, 146, 215
Alw26I	GTCTC	2 cut(s)	215, 368
AlwI	GGATC	5 cut(s)	167, 180, 266, 382, 565
AlwNI	CAGNNNCTG	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	619
AoxI	GGCC	3 cut(s)	72, 357, 606
ApeKI	GCWGC	5 cut(s)	136, 143, 146, 429, 445
ApoI	RAATTY	1 cut(s)	664
ArsI	GACNNNNNNTTYG	2 cut(s)	527, 559
AspS9I	GGNCC	1 cut(s)	606
AsuHPI	GGTGA	4 cut(s)	311, 344, 635, 686
AvaI	CYCGRG	1 cut(s)	619
AxyI	CCTNAGG	1 cut(s)	345
BamHI	GGATCC	1 cut(s)	172
BauI	CACGAG	1 cut(s)	369
BbvI	GCAGC	5 cut(s)	133, 148, 155, 416, 457
BceAI	ACGGC	3 cut(s)	79, 87, 593
BciT130I	CCWGG	3 cut(s)	76, 356, 393
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	2 cut(s)	215, 368
BfmI	CTRYAG	2 cut(s)	147, 546
BisI	GCNGC	5 cut(s)	137, 144, 147, 430, 446
BlsI	GCNGC	5 cut(s)	138, 145, 148, 431, 447
Bme1390I	CCNGG	3 cut(s)	76, 356, 393
BmeT110I	CYCGRG	1 cut(s)	619
BmgT120I	GGNCC	1 cut(s)	606
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	3 cut(s)	76, 356, 393
BmsI	GCATC	2 cut(s)	115, 248
BoxI	GACNNNNGTC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	503
Bsa29I	ATCGAT	1 cut(s)	569
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	5 cut(s)	61, 168, 391, 392, 618
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	440
BseBI	CCWGG	3 cut(s)	76, 356, 393
BseCI	ATCGAT	1 cut(s)	569
BseDI	CCNNGG	5 cut(s)	61, 168, 391, 392, 618
BseGI	GGATG	2 cut(s)	115, 239
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMI	GCAATG	1 cut(s)	440
BseMII	CTCAG	2 cut(s)	197, 359
BseRI	GAGGAG	1 cut(s)	506
BseXI	GCAGC	5 cut(s)	133, 148, 155, 416, 457
BseYI	CCCAGC	1 cut(s)	128
BsgI	GTGCAG	2 cut(s)	210, 415
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	3 cut(s)	74, 359, 608
BshVI	ATCGAT	1 cut(s)	569
BsiHKCI	CYCGRG	1 cut(s)	619
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	2 cut(s)	215, 368
BsnI	GGCC	3 cut(s)	74, 359, 608
BsoBI	CYCGRG	1 cut(s)	619
Bsp143I	GATC	7 cut(s)	45, 172, 271, 301, 387, 412, 570
BspACI	CCGC	2 cut(s)	5, 41
BspANI	GGCC	3 cut(s)	74, 359, 608
BspCNI	CTCAG	2 cut(s)	198, 358
BspDI	ATCGAT	1 cut(s)	569
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	151
BspPI	GGATC	5 cut(s)	167, 180, 266, 382, 565
BsrDI	GCAATG	1 cut(s)	440
BssECI	CCNNGG	5 cut(s)	61, 168, 391, 392, 618
BssMI	GATC	7 cut(s)	45, 172, 271, 301, 387, 412, 570
BssNI	GRCGYC	1 cut(s)	9
BssSI	CACGAG	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	168
Bst2BI	CACGAG	1 cut(s)	369
Bst2UI	CCWGG	3 cut(s)	76, 356, 393
Bst4CI	ACNGT	2 cut(s)	89, 262
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	206, 345
BstDSI	CCRYGG	1 cut(s)	61
BstEII	GGTNACC	1 cut(s)	527
BstF5I	GGATG	2 cut(s)	115, 239
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	7 cut(s)	48, 175, 274, 304, 390, 415, 573
BstMAI	GTCTC	2 cut(s)	215, 368
BstMBI	GATC	7 cut(s)	45, 172, 271, 301, 387, 412, 570
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 356
BstNI	CCWGG	3 cut(s)	76, 356, 393
BstNSI	RCATGY	1 cut(s)	381
BstPAI	GACNNNNGTC	1 cut(s)	207
BstPI	GGTNACC	1 cut(s)	527
BstSCI	CCNGG	3 cut(s)	74, 354, 391
BstSFI	CTRYAG	2 cut(s)	147, 546
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	5 cut(s)	133, 148, 155, 416, 457
BstX2I	RGATCY	3 cut(s)	172, 271, 387
BstYI	RGATCY	3 cut(s)	172, 271, 387
Bsu15I	ATCGAT	1 cut(s)	569
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	3 cut(s)	74, 359, 608
BsuTUI	ATCGAT	1 cut(s)	569
BtgI	CCRYGG	1 cut(s)	61
BtgZI	GCGATG	1 cut(s)	34
BtsCI	GGATG	2 cut(s)	115, 239
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	141
CaiI	CAGNNNCTG	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	606
ClaI	ATCGAT	1 cut(s)	569
CseI	GACGC	2 cut(s)	17, 435
Csp6I	GTAC	1 cut(s)	589
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	3 cut(s)	323, 378, 494
CviJI	RGCY	9 cut(s)	21, 74, 146, 215, 256, 350, 359, 560, 608
CviKI_1	RGCY	9 cut(s)	21, 74, 146, 215, 256, 350, 359, 560, 608
CviQI	GTAC	1 cut(s)	589
DdeI	CTNAG	2 cut(s)	206, 345
DpnI	GATC	7 cut(s)	47, 174, 273, 303, 389, 414, 572
DpnII	GATC	7 cut(s)	45, 172, 271, 301, 387, 412, 570
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	619
Eco91I	GGTNACC	1 cut(s)	527
EcoO65I	GGTNACC	1 cut(s)	527
EcoRII	CCWGG	3 cut(s)	74, 354, 391
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	3 cut(s)	326, 381, 497
FaiI	YATR	7 cut(s)	193, 219, 324, 379, 495, 548, 578
FatI	CATG	3 cut(s)	322, 377, 493
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	5 cut(s)	137, 144, 147, 430, 446
FokI	GGATG	2 cut(s)	122, 226
Fsp4HI	GCNGC	5 cut(s)	137, 144, 147, 430, 446
GluI	GCNGC	5 cut(s)	137, 144, 147, 430, 446
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	3 cut(s)	74, 359, 608
HgaI	GACGC	2 cut(s)	17, 435
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	326, 381, 497
HinfI	GANTC	2 cut(s)	14, 208
HphI	GGTGA	4 cut(s)	311, 344, 635, 686
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	3 cut(s)	34, 202, 509
Hpy188III	TCNNGA	5 cut(s)	275, 371, 383, 410, 520
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	1 cut(s)	429
HpyCH4III	ACNGT	2 cut(s)	89, 262
HpyCH4V	TGCA	6 cut(s)	149, 227, 239, 432, 445, 658
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 356
HpyF3I	CTNAG	2 cut(s)	206, 345
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	326, 381, 497
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	7 cut(s)	45, 172, 271, 301, 387, 412, 570
Lsp1109I	GCAGC	5 cut(s)	133, 148, 155, 416, 457
LweI	GCATC	2 cut(s)	115, 248
MaeIII	GTNAC	4 cut(s)	265, 487, 527, 674
MalI	GATC	7 cut(s)	47, 174, 273, 303, 389, 414, 572
MboI	GATC	7 cut(s)	45, 172, 271, 301, 387, 412, 570
MboII	GAAGA	3 cut(s)	189, 296, 429
MflI	RGATCY	3 cut(s)	172, 271, 387
MluCI	AATT	3 cut(s)	234, 450, 664
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	4 cut(s)	126, 354, 527, 628
MseI	TTAA	3 cut(s)	119, 339, 639
MslI	CAYNNNNRTG	3 cut(s)	108, 244, 297
MspA1I	CMGCKG	2 cut(s)	21, 146
MspR9I	CCNGG	3 cut(s)	76, 356, 393
MvaI	CCWGG	3 cut(s)	76, 356, 393
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	80, 356
NdeII	GATC	7 cut(s)	45, 172, 271, 301, 387, 412, 570
NlaIII	CATG	3 cut(s)	326, 381, 497
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	2 cut(s)	487, 674
NspI	RCATGY	1 cut(s)	381
PasI	CCCWGGG	1 cut(s)	392
PceI	AGGCCT	1 cut(s)	359
PciI	ACATGT	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	675
PfeI	GAWTC	1 cut(s)	14
PflMI	CCANNNNNTGG	1 cut(s)	398
PkrI	GCNGC	5 cut(s)	138, 145, 148, 431, 447
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
PscI	ACATGT	1 cut(s)	377
PshAI	GACNNNNGTC	1 cut(s)	207
Psp6I	CCWGG	3 cut(s)	74, 354, 391
PspEI	GGTNACC	1 cut(s)	527
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	3 cut(s)	74, 354, 391
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	606
PstI	CTGCAG	1 cut(s)	151
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	3 cut(s)	172, 271, 387
PvuII	CAGCTG	2 cut(s)	21, 146
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
RseI	CAYNNNNRTG	3 cut(s)	108, 244, 297
SaqAI	TTAA	3 cut(s)	119, 339, 639
SatI	GCNGC	5 cut(s)	137, 144, 147, 430, 446
Sau3AI	GATC	7 cut(s)	45, 172, 271, 301, 387, 412, 570
Sau96I	GGNCC	1 cut(s)	606
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	3 cut(s)	76, 356, 393
SetI	ASST	7 cut(s)	23, 148, 207, 217, 301, 346, 529
SfaNI	GCATC	2 cut(s)	115, 248
SfcI	CTRYAG	2 cut(s)	147, 546
SmiMI	CAYNNNNRTG	3 cut(s)	108, 244, 297
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	3 cut(s)	234, 450, 664
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	2 cut(s)	5, 41
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	3 cut(s)	74, 354, 391
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	89, 262
TaqI	TCGA	3 cut(s)	211, 424, 569
TasI	AATT	3 cut(s)	234, 450, 664
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	3 cut(s)	119, 339, 639
Tru9I	TTAA	3 cut(s)	119, 339, 639
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	2 cut(s)	487, 674
TseI	GCWGC	5 cut(s)	136, 143, 146, 429, 445
Tsp45I	GTSAC	2 cut(s)	487, 674
TspDTI	ATGAA	3 cut(s)	339, 410, 429
TspRI	CASTG	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	398
XapI	RAATTY	1 cut(s)	664
XceI	RCATGY	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.