Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007293

Physical Location & Seq

Genomic Coordinates Forward (+)

18526690 .. 18532910

Gene Structure 6221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g24330.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTTAGCCACCTCAACCAAACAGATTTTCTGCGGCGAAATGAGCACTCTAAATTTTCTCACTCTCACTCAGCCCCCTCGCGCCTCACGGAGCTCGCAGCTCAGCATTGGCTCAGTACGGCCGAGTAGTCATCCACGGCGGCGGTGTCAGTTCCCGATTCATCCATGGCGGACGCCGATTCCAGGTCCGATCTCCCTCTCATTCTCCTTGCACCTCTATCCTCGGTTTCCTTCCAATCGCATGGTTCGTCAATTGGGCTGTTTGAGTTCTGATTACGCGGAGATCATCGTAGTTCGCCACGGCGAAACGGCCTGGAACGCTGACCGTAGAATACAGGGTCATTTGGATGTTGAGTTAAACGATGCTGGGAGACAGCAAGCAGCTGCAGTGGGTAATAGATTATCCAAGGATCCCAAAATCTCCCTCGTATATTCTTCTGACCTGAGTCGAGCTTATGAGACTGCACAGATCATTGCATCCAAGTGTGGTGGGCTAACGGTTGTAACAGATCCTGATTTACGAGAAAGGCATTTAGGTGATCTTCAAGGACTTGTTTACCATGAACTTGCCAAACTTAAACCTCACGCTCACCAGGCCTTTTTATCTCGTGAGACATGTCAAGAGATCCCAGGGGGTGGAGAAAGTCTTGATCAACTTCATCGACGCTGCACATCTTCATTGCAGCGAATTGGCAATAAACACAAAGGAGAGCGAGTAGTTGTGGCCACTCATGGGGGGGTCATCAGAACACTCCTCAAGAAAGGTTACCCAAATGGCAAGTCTATAGGCAAAGTAGCCAATACATCGATCCACATATTTCACTTGTACGATGACAACAAATGGGCCGTAAAGTCCTCGGGTGATGTTAGTCATCTTAACCAAACAGATTTTCTGCAATCAAATTTCGGTGGGGACGAAAAATCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

310

Amino Acids

34.2

Weight (kDa)

9.59

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50520
fragaria_vesca	FvH4_1g15610 FvH4_1g15610 FvH4_1g15610 FvH4_1g15610
malus_domestica	MD02G1168200.v1.1 MD15G1280300.v1.1 MD15G1280400.v1.1 MD15G1280500.v1.1
prunus_persica	Prupe.7G136800_v2.0.a1 Prupe.7G136800_v2.0.a1 Prupe.7G136900_v2.0.a1
pyrus_communis	pycom15g24320 pycom15g24330
rosa_chinensis	RchiOBHm_Chr2g0104951
rosa_laevigata	RLG00000017378
rosa_multiflora	Rmu_sc0001247.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138630
rosa_rugosa	Rorug02G0123900 Rorug02G0124000
rosa_samantha	Rh2AG174800 Rh2BG182600 Rh2CG179300 Rh2DG181200
rosa_wichuraiana	Rw2G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	635
AccII	CGCG	2 cut(s)	81, 278
AciI	CCGC	5 cut(s)	33, 139, 142, 169, 278
AclWI	GGATC	5 cut(s)	404, 417, 503, 619, 802
AcoI	YGGCCR	2 cut(s)	119, 723
AcsI	RAATTY	2 cut(s)	52, 901
AcyI	GRCGYC	1 cut(s)	173
AfaI	GTAC	2 cut(s)	117, 827
AfiI	CCNNNNNNNGG	3 cut(s)	182, 635, 732
AflIII	ACRYGT	1 cut(s)	614
AgsI	TTSAA	1 cut(s)	545
AjnI	CCWGG	4 cut(s)	181, 311, 591, 628
AjuI	GAANNNNNNNTTGG	4 cut(s)	11, 43, 873, 905
AluBI	AGCT	4 cut(s)	93, 100, 383, 452
AluI	AGCT	4 cut(s)	93, 100, 383, 452
Alw21I	GWGCWC	2 cut(s)	47, 95
Alw26I	GTCTC	3 cut(s)	364, 452, 605
AlwI	GGATC	5 cut(s)	404, 417, 503, 619, 802
AlwNI	CAGNNNCTG	1 cut(s)	512
Ama87I	CYCGRG	1 cut(s)	856
AoxI	GGCC	5 cut(s)	119, 309, 594, 723, 843
ApeKI	GCWGC	5 cut(s)	97, 380, 383, 666, 682
ApoI	RAATTY	2 cut(s)	52, 901
ArsI	GACNNNNNNTTYG	2 cut(s)	764, 796
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	185, 843
AsuHPI	GGTGA	3 cut(s)	548, 581, 872
AvaI	CYCGRG	1 cut(s)	856
AvaII	GGWCC	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	725
BamHI	GGATCC	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	95
BauI	CACGAG	1 cut(s)	606
Bbv12I	GWGCWC	2 cut(s)	47, 95
BbvI	GCAGC	5 cut(s)	109, 370, 392, 653, 694
BceAI	ACGGC	5 cut(s)	134, 152, 316, 324, 830
BciT130I	CCWGG	4 cut(s)	183, 313, 593, 630
BclI	TGATCA	1 cut(s)	649
BcoDI	GTCTC	3 cut(s)	364, 452, 605
BfmI	CTRYAG	2 cut(s)	384, 783
BisI	GCNGC	7 cut(s)	34, 98, 140, 381, 384, 667, 683
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	7 cut(s)	35, 99, 141, 382, 385, 668, 684
Bme1390I	CCNGG	4 cut(s)	183, 313, 593, 630
Bme18I	GGWCC	1 cut(s)	185
BmeT110I	CYCGRG	1 cut(s)	856
BmgT120I	GGNCC	2 cut(s)	185, 843
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	4 cut(s)	183, 313, 593, 630
BmsI	GCATC	2 cut(s)	352, 485
BoxI	GACNNNNGTC	1 cut(s)	444
Bpu1102I	GCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	740
Bsa29I	ATCGAT	1 cut(s)	806
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	8 cut(s)	134, 164, 221, 298, 405, 628, 629, 855
BsaXI	ACNNNNNCTCC	2 cut(s)	699, 729
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 635, 732
Bse3DI	GCAATG	2 cut(s)	471, 677
BseBI	CCWGG	4 cut(s)	183, 313, 593, 630
BseCI	ATCGAT	1 cut(s)	806
BseDI	CCNNGG	8 cut(s)	134, 164, 221, 298, 405, 628, 629, 855
BseGI	GGATG	4 cut(s)	130, 160, 352, 476
BseLI	CCNNNNNNNGG	3 cut(s)	182, 635, 732
BseMI	GCAATG	2 cut(s)	471, 677
BseMII	CTCAG	4 cut(s)	83, 115, 126, 434
BseRI	GAGGAG	1 cut(s)	743
BseX3I	CGGCCG	1 cut(s)	119
BseXI	GCAGC	5 cut(s)	109, 370, 392, 653, 694
BseYI	CCCAGC	1 cut(s)	365
BsgI	GTGCAG	2 cut(s)	447, 652
Bsh1236I	CGCG	2 cut(s)	81, 278
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	5 cut(s)	121, 311, 596, 725, 845
BshVI	ATCGAT	1 cut(s)	806
BsiEI	CGRYCG	1 cut(s)	122
BsiHKAI	GWGCWC	2 cut(s)	47, 95
BsiHKCI	CYCGRG	1 cut(s)	856
BslFI	GGGAC	1 cut(s)	926
BslI	CCNNNNNNNGG	3 cut(s)	182, 635, 732
BsmAI	GTCTC	3 cut(s)	364, 452, 605
BsmFI	GGGAC	1 cut(s)	926
BsnI	GGCC	5 cut(s)	121, 311, 596, 725, 845
BsoBI	CYCGRG	1 cut(s)	856
Bsp1286I	GDGCHC	2 cut(s)	47, 95
Bsp143I	GATC	9 cut(s)	189, 282, 409, 468, 508, 538, 624, 649, 807
Bsp1720I	GCTNAGC	1 cut(s)	101
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	5 cut(s)	33, 139, 142, 169, 278
BspANI	GGCC	5 cut(s)	121, 311, 596, 725, 845
BspCNI	CTCAG	4 cut(s)	82, 114, 125, 435
BspDI	ATCGAT	1 cut(s)	806
BspFNI	CGCG	2 cut(s)	81, 278
BspLI	GGNNCC	1 cut(s)	411
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	5 cut(s)	404, 417, 503, 619, 802
BsrDI	GCAATG	2 cut(s)	471, 677
BssECI	CCNNGG	8 cut(s)	134, 164, 221, 298, 405, 628, 629, 855
BssMI	GATC	9 cut(s)	189, 282, 409, 468, 508, 538, 624, 649, 807
BssNI	GRCGYC	1 cut(s)	173
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	2 cut(s)	164, 405
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	4 cut(s)	183, 313, 593, 630
Bst4CI	ACNGT	2 cut(s)	326, 499
BstACI	GRCGYC	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	95, 378
BstDEI	CTNAG	4 cut(s)	69, 101, 112, 443
BstDSI	CCRYGG	3 cut(s)	134, 164, 298
BstEII	GGTNACC	1 cut(s)	764
BstF5I	GGATG	4 cut(s)	130, 160, 352, 476
BstFNI	CGCG	2 cut(s)	81, 278
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	9 cut(s)	192, 285, 412, 471, 511, 541, 627, 652, 810
BstMAI	GTCTC	3 cut(s)	364, 452, 605
BstMBI	GATC	9 cut(s)	189, 282, 409, 468, 508, 538, 624, 649, 807
BstMCI	CGRYCG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 317, 593
BstNI	CCWGG	4 cut(s)	183, 313, 593, 630
BstNSI	RCATGY	1 cut(s)	618
BstPAI	GACNNNNGTC	1 cut(s)	444
BstPI	GGTNACC	1 cut(s)	764
BstSCI	CCNGG	4 cut(s)	181, 311, 591, 628
BstSFI	CTRYAG	2 cut(s)	384, 783
BstUI	CGCG	2 cut(s)	81, 278
BstV1I	GCAGC	5 cut(s)	109, 370, 392, 653, 694
BstX2I	RGATCY	3 cut(s)	409, 508, 624
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	3 cut(s)	409, 508, 624
BstZI	CGGCCG	1 cut(s)	119
Bsu15I	ATCGAT	1 cut(s)	806
BsuRI	GGCC	5 cut(s)	121, 311, 596, 725, 845
BsuTUI	ATCGAT	1 cut(s)	806
BtgI	CCRYGG	3 cut(s)	134, 164, 298
BtsCI	GGATG	4 cut(s)	130, 160, 352, 476
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	2 cut(s)	95, 378
CaiI	CAGNNNCTG	1 cut(s)	512
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	185, 843
ClaI	ATCGAT	1 cut(s)	806
CseI	GACGC	2 cut(s)	181, 672
Csp6I	GTAC	2 cut(s)	116, 826
CspCI	CAANNNNNGTGG	2 cut(s)	469, 504
CviAII	CATG	5 cut(s)	165, 241, 560, 615, 731
CviQI	GTAC	2 cut(s)	116, 826
DdeI	CTNAG	4 cut(s)	69, 101, 112, 443
DpnI	GATC	9 cut(s)	191, 284, 411, 470, 510, 540, 626, 651, 809
DpnII	GATC	9 cut(s)	189, 282, 409, 468, 508, 538, 624, 649, 807
EaeI	YGGCCR	2 cut(s)	119, 723
EagI	CGGCCG	1 cut(s)	119
EciI	GGCGGA	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	93
EclXI	CGGCCG	1 cut(s)	119
Eco130I	CCWWGG	2 cut(s)	164, 405
Eco147I	AGGCCT	1 cut(s)	596
Eco24I	GRGCYC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	185
Eco52I	CGGCCG	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	93
Eco88I	CYCGRG	1 cut(s)	856
Eco91I	GGTNACC	1 cut(s)	764
EcoICRI	GAGCTC	1 cut(s)	93
EcoO65I	GGTNACC	1 cut(s)	764
EcoRII	CCWGG	4 cut(s)	181, 311, 591, 628
EcoT14I	CCWWGG	2 cut(s)	164, 405
EcoT38I	GRGCYC	1 cut(s)	95
ErhI	CCWWGG	2 cut(s)	164, 405
FaeI	CATG	5 cut(s)	168, 244, 563, 618, 734
FaiI	YATR	9 cut(s)	166, 242, 430, 456, 561, 616, 732, 785, 815
FaqI	GGGAC	1 cut(s)	926
FatI	CATG	5 cut(s)	164, 240, 559, 614, 730
FbaI	TGATCA	1 cut(s)	649
Fnu4HI	GCNGC	7 cut(s)	34, 98, 140, 381, 384, 667, 683
FokI	GGATG	4 cut(s)	117, 147, 359, 463
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	7 cut(s)	34, 98, 140, 381, 384, 667, 683
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	7 cut(s)	34, 98, 140, 381, 384, 667, 683
GsaI	CCCAGC	1 cut(s)	369
HaeIII	GGCC	5 cut(s)	121, 311, 596, 725, 845
HgaI	GACGC	2 cut(s)	181, 672
HhaI	GCGC	1 cut(s)	83
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	5 cut(s)	168, 244, 563, 618, 734
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	3 cut(s)	157, 178, 445
HphI	GGTGA	3 cut(s)	548, 581, 872
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	4 cut(s)	189, 271, 439, 746
Hpy188III	TCNNGA	6 cut(s)	154, 512, 608, 620, 647, 757
Hpy8I	GTNNAC	1 cut(s)	556
Hpy99I	CGWCG	1 cut(s)	666
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	2 cut(s)	326, 499
HpyCH4V	TGCA	7 cut(s)	211, 386, 464, 476, 669, 682, 895
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 317, 593
HpyF3I	CTNAG	4 cut(s)	69, 101, 112, 443
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	5 cut(s)	168, 244, 563, 618, 734
HspAI	GCGC	1 cut(s)	81
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	9 cut(s)	189, 282, 409, 468, 508, 538, 624, 649, 807
LmnI	GCTCC	1 cut(s)	90
Lsp1109I	GCAGC	5 cut(s)	109, 370, 392, 653, 694
LweI	GCATC	2 cut(s)	352, 485
MaeIII	GTNAC	2 cut(s)	502, 764
MalI	GATC	9 cut(s)	191, 284, 411, 470, 510, 540, 626, 651, 809
MboI	GATC	9 cut(s)	189, 282, 409, 468, 508, 538, 624, 649, 807
MboII	GAAGA	3 cut(s)	426, 533, 666
MfeI	CAATTG	1 cut(s)	251
MflI	RGATCY	3 cut(s)	409, 508, 624
MhlI	GDGCHC	2 cut(s)	47, 95
MlsI	TGGCCA	1 cut(s)	725
MluCI	AATT	4 cut(s)	52, 251, 687, 901
MluNI	TGGCCA	1 cut(s)	725
MlyI	GAGTC	1 cut(s)	454
Mox20I	TGGCCA	1 cut(s)	725
MscI	TGGCCA	1 cut(s)	725
MseI	TTAA	3 cut(s)	356, 576, 876
MslI	CAYNNNNRTG	3 cut(s)	345, 481, 534
Msp20I	TGGCCA	1 cut(s)	725
MspA1I	CMGCKG	1 cut(s)	383
MspR9I	CCNGG	4 cut(s)	183, 313, 593, 630
MunI	CAATTG	1 cut(s)	251
MvaI	CCWGG	4 cut(s)	183, 313, 593, 630
MvnI	CGCG	2 cut(s)	81, 278
MwoI	GCNNNNNNNGC	3 cut(s)	42, 317, 593
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	9 cut(s)	189, 282, 409, 468, 508, 538, 624, 649, 807
NlaIII	CATG	5 cut(s)	168, 244, 563, 618, 734
NlaIV	GGNNCC	1 cut(s)	411
NmeAIII	GCCGAG	1 cut(s)	147
NspI	RCATGY	1 cut(s)	618
PasI	CCCWGGG	1 cut(s)	629
PceI	AGGCCT	1 cut(s)	596
PciI	ACATGT	1 cut(s)	614
PcsI	WCGNNNNNNNCGW	2 cut(s)	244, 912
PfeI	GAWTC	2 cut(s)	157, 178
PflMI	CCANNNNNTGG	1 cut(s)	635
PkrI	GCNGC	7 cut(s)	35, 99, 141, 382, 385, 668, 684
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
PscI	ACATGT	1 cut(s)	614
PshAI	GACNNNNGTC	1 cut(s)	444
Psp124BI	GAGCTC	1 cut(s)	95
Psp6I	CCWGG	4 cut(s)	181, 311, 591, 628
PspEI	GGTNACC	1 cut(s)	764
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	4 cut(s)	181, 311, 591, 628
PspN4I	GGNNCC	1 cut(s)	411
PspPI	GGNCC	2 cut(s)	185, 843
PstI	CTGCAG	1 cut(s)	388
PstNI	CAGNNNCTG	1 cut(s)	512
PsuI	RGATCY	3 cut(s)	409, 508, 624
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	2 cut(s)	117, 827
RsaNI	GTAC	2 cut(s)	116, 826
RseI	CAYNNNNRTG	3 cut(s)	345, 481, 534
SacI	GAGCTC	1 cut(s)	95
SaqAI	TTAA	3 cut(s)	356, 576, 876
SatI	GCNGC	7 cut(s)	34, 98, 140, 381, 384, 667, 683
Sau3AI	GATC	9 cut(s)	189, 282, 409, 468, 508, 538, 624, 649, 807
Sau96I	GGNCC	2 cut(s)	185, 843
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	4 cut(s)	183, 313, 593, 630
SduI	GDGCHC	2 cut(s)	47, 95
SfaNI	GCATC	2 cut(s)	352, 485
SfcI	CTRYAG	2 cut(s)	384, 783
SinI	GGWCC	1 cut(s)	185
SmiMI	CAYNNNNRTG	3 cut(s)	345, 481, 534
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
Sse9I	AATT	4 cut(s)	52, 251, 687, 901
SseBI	AGGCCT	1 cut(s)	596
SsiI	CCGC	5 cut(s)	33, 139, 142, 169, 278
SstI	GAGCTC	1 cut(s)	95
StuI	AGGCCT	1 cut(s)	596
StyD4I	CCNGG	4 cut(s)	181, 311, 591, 628
StyI	CCWWGG	2 cut(s)	164, 405
TaaI	ACNGT	2 cut(s)	326, 499
TaqI	TCGA	3 cut(s)	448, 661, 806
TasI	AATT	4 cut(s)	52, 251, 687, 901
TauI	GCSGC	2 cut(s)	36, 142
TfiI	GAWTC	2 cut(s)	157, 178
Tru1I	TTAA	3 cut(s)	356, 576, 876
Tru9I	TTAA	3 cut(s)	356, 576, 876
TscAI	CASTG	1 cut(s)	393
TseI	GCWGC	5 cut(s)	97, 380, 383, 666, 682
TspDTI	ATGAA	4 cut(s)	149, 576, 647, 666
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	393
Van91I	CCANNNNNTGG	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	2 cut(s)	52, 901
XceI	RCATGY	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.