Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007293

Physical Location & Seq

Genomic Coordinates Reverse (-)

15392419 .. 15395823

Gene Structure 3405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G136900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCAACGTCATCAGTGCCCGAGTCGGAGTCCGATTCCAGCTGTGTTGGCTCGGATTACGCAGAGATCATAGTACTGCGTCACGGTGAAACGGCCTGGAACGCTGATGGAAGAATCCAGGGGCATCTGGATGTTGAGTTAAATGATGCCGGGAGGCAGCAAGCAGCTGTAGTGGGTGATAGGTTATCCAAGGAGCCCAAGATCTCCGTTGTATATTCTTCTGACTTAGCACGAGCTTATGAAACTGCACAGATAATTGCAGCCAGGTGTGGCGGGATAAAGGTTGTAACAGATGTTGATTTACGAGAAAGGCATTTAGGGGATCTTCAAGGCCTTGTATTTCGCGACACTGCCAAACTTAATCCTAAGGCTCACCGGGCCTTTGTATCTCGTGAGACATGCCAAGAGATTCCAAAAAGCACTCCATGGAGAAATATTATGGAATTTCCTGCCCATGACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

155

Amino Acids

16.9

Weight (kDa)

5.51

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50520
fragaria_vesca	FvH4_1g15610 FvH4_1g15610 FvH4_1g15610 FvH4_1g15610
malus_domestica	MD02G1168200.v1.1 MD15G1280300.v1.1 MD15G1280400.v1.1 MD15G1280500.v1.1
prunus_persica	Prupe.7G136800_v2.0.a1 Prupe.7G136800_v2.0.a1 Prupe.7G136900_v2.0.a1
pyrus_communis	pycom15g24320 pycom15g24330
rosa_chinensis	RchiOBHm_Chr2g0104951
rosa_laevigata	RLG00000017378
rosa_multiflora	Rmu_sc0001247.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138630
rosa_rugosa	Rorug02G0123900 Rorug02G0124000
rosa_samantha	Rh2AG174800 Rh2BG182600 Rh2CG179300 Rh2DG181200
rosa_wichuraiana	Rw2G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	345
AciI	CCGC	1 cut(s)	273
AclWI	GGATC	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	443
AfaI	GTAC	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	3 cut(s)	95, 117, 263
AluBI	AGCT	4 cut(s)	42, 167, 236, 462
AluI	AGCT	4 cut(s)	42, 167, 236, 462
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	1 cut(s)	330
Ama87I	CYCGRG	1 cut(s)	20
AoxI	GGCC	3 cut(s)	93, 331, 378
ApeKI	GCWGC	3 cut(s)	157, 164, 260
ApoI	RAATTY	1 cut(s)	443
AspS9I	GGNCC	1 cut(s)	378
AsuC2I	CCSGG	2 cut(s)	151, 377
AsuHPI	GGTGA	3 cut(s)	98, 188, 365
AvaI	CYCGRG	1 cut(s)	20
AxyI	CCTNAGG	1 cut(s)	366
BaeGI	GKGCMC	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	198
BauI	CACGAG	2 cut(s)	231, 390
BbvI	GCAGC	3 cut(s)	169, 176, 272
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	108
BciT130I	CCWGG	3 cut(s)	97, 119, 265
BcnI	CCSGG	2 cut(s)	151, 377
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	1 cut(s)	463
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	3 cut(s)	158, 165, 261
BlsI	GCNGC	3 cut(s)	159, 166, 262
BmcAI	AGTACT	1 cut(s)	75
Bme1390I	CCNGG	5 cut(s)	97, 119, 151, 265, 377
BmeT110I	CYCGRG	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	5 cut(s)	97, 119, 151, 265, 377
BmsI	GCATC	2 cut(s)	133, 136
BpuMI	CCSGG	2 cut(s)	151, 377
BsaJI	CCNNGG	3 cut(s)	118, 189, 425
Bse21I	CCTNAGG	1 cut(s)	366
BseBI	CCWGG	3 cut(s)	97, 119, 265
BseDI	CCNNGG	3 cut(s)	118, 189, 425
BseGI	GGATG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	3 cut(s)	169, 176, 272
BsgI	GTGCAG	1 cut(s)	231
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	3 cut(s)	95, 333, 380
BsiHKCI	CYCGRG	1 cut(s)	20
BsiSI	CCGG	2 cut(s)	150, 376
BsmAI	GTCTC	1 cut(s)	389
BsnI	GGCC	3 cut(s)	95, 333, 380
BsoBI	CYCGRG	1 cut(s)	20
Bsp1286I	GDGCHC	2 cut(s)	21, 198
Bsp143I	GATC	3 cut(s)	66, 201, 322
Bsp19I	CCATGG	1 cut(s)	425
Bsp68I	TCGCGA	1 cut(s)	345
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	3 cut(s)	95, 333, 380
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	330
BssECI	CCNNGG	3 cut(s)	118, 189, 425
BssMI	GATC	3 cut(s)	66, 201, 322
BssSI	CACGAG	2 cut(s)	231, 390
BssT1I	CCWWGG	2 cut(s)	189, 425
Bst2BI	CACGAG	2 cut(s)	231, 390
Bst2UI	CCWGG	3 cut(s)	97, 119, 265
Bst4CI	ACNGT	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	2 cut(s)	226, 366
BstDSI	CCRYGG	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	136
BstFNI	CGCG	1 cut(s)	345
BstKTI	GATC	3 cut(s)	69, 204, 325
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	3 cut(s)	66, 201, 322
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 101, 377
BstNI	CCWGG	3 cut(s)	97, 119, 265
BstNSI	RCATGY	1 cut(s)	402
BstSCI	CCNGG	5 cut(s)	95, 117, 149, 263, 375
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	1 cut(s)	21
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	3 cut(s)	169, 176, 272
BstX2I	RGATCY	2 cut(s)	201, 322
BstYI	RGATCY	2 cut(s)	201, 322
Bsu36I	CCTNAGG	1 cut(s)	366
BsuRI	GGCC	3 cut(s)	95, 333, 380
BtgI	CCRYGG	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	136
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	21, 348
BtuMI	TCGCGA	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	378
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	3 cut(s)	399, 426, 455
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	2 cut(s)	226, 366
DpnI	GATC	3 cut(s)	68, 203, 324
DpnII	GATC	3 cut(s)	66, 201, 322
Eco130I	CCWWGG	2 cut(s)	189, 425
Eco147I	AGGCCT	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	198
Eco81I	CCTNAGG	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	20
EcoRII	CCWGG	3 cut(s)	95, 117, 263
EcoT14I	CCWWGG	2 cut(s)	189, 425
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	2 cut(s)	189, 425
FaeI	CATG	3 cut(s)	402, 429, 458
FaiI	YATR	7 cut(s)	71, 214, 240, 400, 427, 440, 456
FatI	CATG	3 cut(s)	398, 425, 454
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	3 cut(s)	158, 165, 261
FokI	GGATG	1 cut(s)	143
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	3 cut(s)	158, 165, 261
FspBI	CTAG	1 cut(s)	463
GluI	GCNGC	3 cut(s)	158, 165, 261
HaeIII	GGCC	3 cut(s)	95, 333, 380
HapII	CCGG	2 cut(s)	150, 376
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	402, 429, 458
HinfI	GANTC	5 cut(s)	23, 29, 35, 114, 409
HpaII	CCGG	2 cut(s)	150, 376
HphI	GGTGA	3 cut(s)	98, 188, 365
Hpy188I	TCNGA	4 cut(s)	28, 34, 55, 223
Hpy188III	TCNNGA	3 cut(s)	128, 344, 392
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	2 cut(s)	248, 260
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 101, 377
HpyF3I	CTNAG	2 cut(s)	226, 366
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	3 cut(s)	402, 429, 458
Kzo9I	GATC	3 cut(s)	66, 201, 322
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	3 cut(s)	169, 176, 272
LweI	GCATC	2 cut(s)	133, 136
MaeI	CTAG	1 cut(s)	463
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	2 cut(s)	80, 286
MalI	GATC	3 cut(s)	68, 203, 324
MboI	GATC	3 cut(s)	66, 201, 322
MboII	GAAGA	3 cut(s)	123, 210, 317
MflI	RGATCY	2 cut(s)	201, 322
MhlI	GDGCHC	2 cut(s)	21, 198
MluCI	AATT	2 cut(s)	255, 443
MlyI	GAGTC	2 cut(s)	32, 38
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	1 cut(s)	147
MseI	TTAA	2 cut(s)	140, 360
MslI	CAYNNNNRTG	1 cut(s)	129
MspA1I	CMGCKG	2 cut(s)	42, 167
MspI	CCGG	2 cut(s)	150, 376
MspR9I	CCNGG	5 cut(s)	97, 119, 151, 265, 377
MvaI	CCWGG	3 cut(s)	97, 119, 265
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	3 cut(s)	48, 101, 377
NciI	CCSGG	2 cut(s)	151, 377
NcoI	CCATGG	1 cut(s)	425
NdeII	GATC	3 cut(s)	66, 201, 322
NlaIII	CATG	3 cut(s)	402, 429, 458
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	80
NruI	TCGCGA	1 cut(s)	345
NspI	RCATGY	1 cut(s)	402
PceI	AGGCCT	1 cut(s)	333
PfeI	GAWTC	3 cut(s)	35, 114, 409
PkrI	GCNGC	3 cut(s)	159, 166, 262
PleI	GAGTC	2 cut(s)	31, 37
PpsI	GAGTC	2 cut(s)	31, 37
Psp6I	CCWGG	3 cut(s)	95, 117, 263
PspGI	CCWGG	3 cut(s)	95, 117, 263
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	378
PsuI	RGATCY	2 cut(s)	201, 322
PvuII	CAGCTG	2 cut(s)	42, 167
RruI	TCGCGA	1 cut(s)	345
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	140, 360
SatI	GCNGC	3 cut(s)	158, 165, 261
Sau3AI	GATC	3 cut(s)	66, 201, 322
Sau96I	GGNCC	1 cut(s)	378
ScaI	AGTACT	1 cut(s)	75
SchI	GAGTC	2 cut(s)	32, 38
ScrFI	CCNGG	5 cut(s)	97, 119, 151, 265, 377
SduI	GDGCHC	2 cut(s)	21, 198
SetI	ASST	8 cut(s)	11, 44, 169, 185, 238, 269, 285, 464
SfaNI	GCATC	2 cut(s)	133, 136
SfcI	CTRYAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	129
Sse9I	AATT	2 cut(s)	255, 443
SseBI	AGGCCT	1 cut(s)	333
SsiI	CCGC	1 cut(s)	273
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	1 cut(s)	463
StuI	AGGCCT	1 cut(s)	333
StyD4I	CCNGG	5 cut(s)	95, 117, 149, 263, 375
StyI	CCWWGG	2 cut(s)	189, 425
TaaI	ACNGT	1 cut(s)	86
TaiI	ACGT	1 cut(s)	11
TasI	AATT	2 cut(s)	255, 443
TatI	WGTACW	1 cut(s)	73
TfiI	GAWTC	3 cut(s)	35, 114, 409
Tru1I	TTAA	2 cut(s)	140, 360
Tru9I	TTAA	2 cut(s)	140, 360
TscAI	CASTG	2 cut(s)	21, 355
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	3 cut(s)	157, 164, 260
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	255
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	2 cut(s)	21, 355
XapI	RAATTY	1 cut(s)	443
XceI	RCATGY	1 cut(s)	402
XspI	CTAG	1 cut(s)	463
ZrmI	AGTACT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.