Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007293

Physical Location & Seq

Genomic Coordinates Forward (+)

14434769 .. 14438487

Gene Structure 3719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1168200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCAGAGGCCGATTCCAGGTCCGATCTCCCTCCCATTCTCCTTGCACCTCTATCCTCCGTTTCCCTCCAGTCGTATACTTCGTCAATTAGGGTTTTGTATATCAAGCCTTCGATGCTGGAAAACTGTGTGACTTCGGATTACGCGGAGATCATCGTAGTTCGTCATGGCGAAACGGCCTGGAACGCTGAGCATAGAATCCAGGGGCATTTGGATGTTGAATTAAATGATGCTGGGAGGCAGCAAGCAGCGGCAGTGGGTAATAGATTATCAAAGGATACCAAAATCTCCCTTGTATATTCTTCTGATCTGAGTCGAGCTTATGAGACTGCACAGATAATTGCAGCCAGGTGTGGTGGGCTAAAGGTTGAAACAGATCCTGATTTACGCGAAAGGCATTTAGGTGATCTTCAAGGACTTGTACACCGTGAACTTGCCAAAGTTAAACCTCAGGCTTACCAGGCCTTTGTATCTCGTGAGACATTTCAAGAAATCCCAGGTGGTGGAGAAAGTCTTGATCAACTTCATCAACGCTGCACGTCTTCATTGCAGCGAATTGGCAGTAAACACAAGGGAGAGCGAGTAGTTGCAGTCGCTCATGGGGGGGTCATCAGAACACTCCTCAAGAAGGGTTACCCAAATGGCAAGTCTGTAGGCAAAGTAGGCAATACATCGATCCACATATTTCGCTTGTACGATGACGGAAAATGGACCGTGAAATCCTCAGGTGATGTTAGTCATCTCAACCAAACAGATTATCTGGAATCAGCTTTCGGTGGGGATGAAAATTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

266

Amino Acids

28.97

Weight (kDa)

6.8

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	51 - 242	1.7e-55	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50520
fragaria_vesca	FvH4_1g15610 FvH4_1g15610 FvH4_1g15610 FvH4_1g15610
malus_domestica	MD02G1168200.v1.1 MD15G1280300.v1.1 MD15G1280400.v1.1 MD15G1280500.v1.1
prunus_persica	Prupe.7G136800_v2.0.a1 Prupe.7G136800_v2.0.a1 Prupe.7G136900_v2.0.a1
pyrus_communis	pycom15g24320 pycom15g24330
rosa_chinensis	RchiOBHm_Chr2g0104951
rosa_laevigata	RLG00000017378
rosa_multiflora	Rmu_sc0001247.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138630
rosa_rugosa	Rorug02G0123900 Rorug02G0124000
rosa_samantha	Rh2AG174800 Rh2BG182600 Rh2CG179300 Rh2DG181200
rosa_wichuraiana	Rw2G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	503
AccI	GTMKAC	1 cut(s)	77
AccII	CGCG	2 cut(s)	146, 390
AciI	CCGC	2 cut(s)	146, 251
AclWI	GGATC	2 cut(s)	371, 670
AcsI	RAATTY	1 cut(s)	787
AfaI	GTAC	2 cut(s)	423, 695
AfiI	CCNNNNNNNGG	3 cut(s)	18, 503, 628
AgsI	TTSAA	4 cut(s)	221, 371, 413, 488
AjiI	CACGTC	1 cut(s)	540
AjnI	CCWGG	6 cut(s)	17, 179, 201, 347, 459, 496
AluBI	AGCT	2 cut(s)	320, 770
AluI	AGCT	2 cut(s)	320, 770
Alw26I	GTCTC	2 cut(s)	320, 473
AlwI	GGATC	2 cut(s)	371, 670
AlwNI	CAGNNNCTG	1 cut(s)	380
AoxI	GGCC	3 cut(s)	9, 177, 462
ApeKI	GCWGC	5 cut(s)	241, 248, 344, 534, 550
ApoI	RAATTY	1 cut(s)	787
ArsI	GACNNNNNNTTYG	2 cut(s)	632, 664
AspS9I	GGNCC	2 cut(s)	21, 711
AsuHPI	GGTGA	2 cut(s)	416, 740
AvaII	GGWCC	2 cut(s)	21, 711
AxyI	CCTNAGG	2 cut(s)	450, 724
BauI	CACGAG	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	534
BbvI	GCAGC	5 cut(s)	253, 260, 356, 521, 562
BceAI	ACGGC	1 cut(s)	192
BciT130I	CCWGG	6 cut(s)	19, 181, 203, 349, 461, 498
BciVI	GTATCC	1 cut(s)	271
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	2 cut(s)	320, 473
BfmI	CTRYAG	1 cut(s)	651
BfuI	GTATCC	1 cut(s)	271
BisI	GCNGC	6 cut(s)	242, 249, 252, 345, 535, 551
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	6 cut(s)	243, 250, 253, 346, 536, 552
Bme1390I	CCNGG	6 cut(s)	19, 181, 203, 349, 461, 498
Bme18I	GGWCC	2 cut(s)	21, 711
BmgBI	CACGTC	1 cut(s)	540
BmgT120I	GGNCC	2 cut(s)	21, 711
BmrFI	CCNGG	6 cut(s)	19, 181, 203, 349, 461, 498
BmsI	GCATC	2 cut(s)	105, 220
BpiI	GAAGAC	1 cut(s)	534
BpmI	CTGGAG	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	608
Bsa29I	ATCGAT	1 cut(s)	674
BsaJI	CCNNGG	2 cut(s)	202, 496
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 503, 628
Bse1I	ACTGG	1 cut(s)	70
Bse21I	CCTNAGG	2 cut(s)	450, 724
Bse3DI	GCAATG	1 cut(s)	545
BseBI	CCWGG	6 cut(s)	19, 181, 203, 349, 461, 498
BseCI	ATCGAT	1 cut(s)	674
BseDI	CCNNGG	2 cut(s)	202, 496
BseGI	GGATG	2 cut(s)	220, 787
BseLI	CCNNNNNNNGG	3 cut(s)	18, 503, 628
BseMI	GCAATG	1 cut(s)	545
BseMII	CTCAG	4 cut(s)	180, 302, 464, 738
BseNI	ACTGG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	611
BseXI	GCAGC	5 cut(s)	253, 260, 356, 521, 562
BseYI	CCCAGC	1 cut(s)	233
BsgI	GTGCAG	2 cut(s)	315, 520
Bsh1236I	CGCG	2 cut(s)	146, 390
BshFI	GGCC	3 cut(s)	11, 179, 464
BshVI	ATCGAT	1 cut(s)	674
BslI	CCNNNNNNNGG	3 cut(s)	18, 503, 628
BsmAI	GTCTC	2 cut(s)	320, 473
BsnI	GGCC	3 cut(s)	11, 179, 464
Bsp1407I	TGTACA	1 cut(s)	421
Bsp143I	GATC	7 cut(s)	25, 150, 307, 376, 406, 517, 675
Bsp1720I	GCTNAGC	1 cut(s)	189
BspACI	CCGC	2 cut(s)	146, 251
BspANI	GGCC	3 cut(s)	11, 179, 464
BspCNI	CTCAG	4 cut(s)	181, 303, 463, 737
BspDI	ATCGAT	1 cut(s)	674
BspFNI	CGCG	2 cut(s)	146, 390
BspPI	GGATC	2 cut(s)	371, 670
BsrDI	GCAATG	1 cut(s)	545
BsrGI	TGTACA	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	202, 496
BssMI	GATC	7 cut(s)	25, 150, 307, 376, 406, 517, 675
BssNAI	GTATAC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	474
Bst1107I	GTATAC	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	474
Bst2UI	CCWGG	6 cut(s)	19, 181, 203, 349, 461, 498
Bst4CI	ACNGT	3 cut(s)	128, 428, 715
BstAUI	TGTACA	1 cut(s)	421
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	4 cut(s)	189, 311, 450, 724
BstEII	GGTNACC	1 cut(s)	632
BstENI	CCTNNNNNAGG	1 cut(s)	626
BstF5I	GGATG	2 cut(s)	220, 787
BstFNI	CGCG	2 cut(s)	146, 390
BstKTI	GATC	7 cut(s)	28, 153, 310, 379, 409, 520, 678
BstMAI	GTCTC	2 cut(s)	320, 473
BstMBI	GATC	7 cut(s)	25, 150, 307, 376, 406, 517, 675
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 185, 461, 663
BstNI	CCWGG	6 cut(s)	19, 181, 203, 349, 461, 498
BstPI	GGTNACC	1 cut(s)	632
BstSCI	CCNGG	6 cut(s)	17, 179, 201, 347, 459, 496
BstSFI	CTRYAG	1 cut(s)	651
BstUI	CGCG	2 cut(s)	146, 390
BstV1I	GCAGC	5 cut(s)	253, 260, 356, 521, 562
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BstZ17I	GTATAC	1 cut(s)	78
Bsu15I	ATCGAT	1 cut(s)	674
Bsu36I	CCTNAGG	2 cut(s)	450, 724
BsuI	GTATCC	1 cut(s)	271
BsuRI	GGCC	3 cut(s)	11, 179, 464
BsuTUI	ATCGAT	1 cut(s)	674
BtrI	CACGTC	1 cut(s)	540
BtsCI	GGATG	2 cut(s)	220, 787
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	246
CaiI	CAGNNNCTG	1 cut(s)	380
Cfr13I	GGNCC	2 cut(s)	21, 711
ClaI	ATCGAT	1 cut(s)	674
Csp6I	GTAC	2 cut(s)	422, 694
CviAII	CATG	2 cut(s)	167, 599
CviJI	RGCY	9 cut(s)	11, 109, 179, 320, 347, 361, 455, 464, 770
CviKI_1	RGCY	9 cut(s)	11, 109, 179, 320, 347, 361, 455, 464, 770
CviQI	GTAC	2 cut(s)	422, 694
DdeI	CTNAG	4 cut(s)	189, 311, 450, 724
DpnI	GATC	7 cut(s)	27, 152, 309, 378, 408, 519, 677
DpnII	GATC	7 cut(s)	25, 150, 307, 376, 406, 517, 675
Eco147I	AGGCCT	1 cut(s)	464
Eco47I	GGWCC	2 cut(s)	21, 711
Eco81I	CCTNAGG	2 cut(s)	450, 724
Eco91I	GGTNACC	1 cut(s)	632
EcoNI	CCTNNNNNAGG	1 cut(s)	626
EcoO65I	GGTNACC	1 cut(s)	632
EcoRII	CCWGG	6 cut(s)	17, 179, 201, 347, 459, 496
FaeI	CATG	2 cut(s)	170, 602
FaiI	YATR	8 cut(s)	78, 102, 168, 195, 298, 324, 600, 683
FatI	CATG	2 cut(s)	166, 598
FbaI	TGATCA	1 cut(s)	517
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	6 cut(s)	242, 249, 252, 345, 535, 551
FokI	GGATG	2 cut(s)	227, 794
Fsp4HI	GCNGC	6 cut(s)	242, 249, 252, 345, 535, 551
GluI	GCNGC	6 cut(s)	242, 249, 252, 345, 535, 551
GsaI	CCCAGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	11, 179, 464
Hin1II	CATG	2 cut(s)	170, 602
HinfI	GANTC	4 cut(s)	14, 198, 313, 764
HphI	GGTGA	2 cut(s)	416, 740
Hpy166II	GTNNAC	4 cut(s)	78, 424, 431, 566
Hpy188I	TCNGA	5 cut(s)	25, 139, 307, 312, 614
Hpy188III	TCNNGA	6 cut(s)	380, 476, 488, 515, 625, 761
Hpy8I	GTNNAC	4 cut(s)	78, 424, 431, 566
HpyAV	CCTTC	2 cut(s)	120, 622
HpyCH4III	ACNGT	3 cut(s)	128, 428, 715
HpyCH4IV	ACGT	1 cut(s)	539
HpyCH4V	TGCA	6 cut(s)	47, 332, 344, 537, 550, 590
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 185, 461, 663
HpyF3I	CTNAG	4 cut(s)	189, 311, 450, 724
HpySE526I	ACGT	1 cut(s)	539
Hsp92II	CATG	2 cut(s)	170, 602
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	7 cut(s)	25, 150, 307, 376, 406, 517, 675
Lsp1109I	GCAGC	5 cut(s)	253, 260, 356, 521, 562
LweI	GCATC	2 cut(s)	105, 220
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	2 cut(s)	130, 632
MalI	GATC	7 cut(s)	27, 152, 309, 378, 408, 519, 677
MboI	GATC	7 cut(s)	25, 150, 307, 376, 406, 517, 675
MboII	GAAGA	3 cut(s)	294, 401, 534
MflI	RGATCY	1 cut(s)	376
MluCI	AATT	5 cut(s)	87, 221, 339, 555, 787
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	8 cut(s)	42, 60, 67, 77, 231, 459, 632, 733
MseI	TTAA	2 cut(s)	224, 444
MslI	CAYNNNNRTG	2 cut(s)	213, 402
MspA1I	CMGCKG	1 cut(s)	251
MspR9I	CCNGG	6 cut(s)	19, 181, 203, 349, 461, 498
MvaI	CCWGG	6 cut(s)	19, 181, 203, 349, 461, 498
MvnI	CGCG	2 cut(s)	146, 390
MwoI	GCNNNNNNNGC	4 cut(s)	115, 185, 461, 663
NdeII	GATC	7 cut(s)	25, 150, 307, 376, 406, 517, 675
NlaIII	CATG	2 cut(s)	170, 602
NmuCI	GTSAC	1 cut(s)	130
PceI	AGGCCT	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PfeI	GAWTC	3 cut(s)	14, 198, 764
PflMI	CCANNNNNTGG	1 cut(s)	503
PkrI	GCNGC	6 cut(s)	243, 250, 253, 346, 536, 552
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
Psp6I	CCWGG	6 cut(s)	17, 179, 201, 347, 459, 496
PspEI	GGTNACC	1 cut(s)	632
PspFI	CCCAGC	1 cut(s)	233
PspGI	CCWGG	6 cut(s)	17, 179, 201, 347, 459, 496
PspPI	GGNCC	2 cut(s)	21, 711
PstNI	CAGNNNCTG	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	2 cut(s)	423, 695
RsaNI	GTAC	2 cut(s)	422, 694
RseI	CAYNNNNRTG	2 cut(s)	213, 402
SaqAI	TTAA	2 cut(s)	224, 444
SatI	GCNGC	6 cut(s)	242, 249, 252, 345, 535, 551
Sau3AI	GATC	7 cut(s)	25, 150, 307, 376, 406, 517, 675
Sau96I	GGNCC	2 cut(s)	21, 711
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	6 cut(s)	19, 181, 203, 349, 461, 498
SfaNI	GCATC	2 cut(s)	105, 220
SfcI	CTRYAG	1 cut(s)	651
SinI	GGWCC	2 cut(s)	21, 711
SmiMI	CAYNNNNRTG	2 cut(s)	213, 402
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
Sse9I	AATT	5 cut(s)	87, 221, 339, 555, 787
SseBI	AGGCCT	1 cut(s)	464
SsiI	CCGC	2 cut(s)	146, 251
StuI	AGGCCT	1 cut(s)	464
StyD4I	CCNGG	6 cut(s)	17, 179, 201, 347, 459, 496
TaaI	ACNGT	3 cut(s)	128, 428, 715
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	3 cut(s)	113, 316, 674
TasI	AATT	5 cut(s)	87, 221, 339, 555, 787
TatI	WGTACW	1 cut(s)	421
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	3 cut(s)	14, 198, 764
Tru1I	TTAA	2 cut(s)	224, 444
Tru9I	TTAA	2 cut(s)	224, 444
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	5 cut(s)	241, 248, 344, 534, 550
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	3 cut(s)	515, 534, 798
TspGWI	ACGGA	2 cut(s)	49, 717
TspRI	CASTG	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	503
VpaK11BI	GGWCC	2 cut(s)	21, 711
XagI	CCTNNNNNAGG	1 cut(s)	626
XapI	RAATTY	1 cut(s)	787
XmiI	GTMKAC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.