Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006769

Physical Location & Seq

Genomic Coordinates Forward (+)

20056664 .. 20059583

Gene Structure 2920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAGTTTTCATCACAAGACGACGATTTTGGAGGAGACGATTCCGCTGCTAATGCCACCAGGGCTTCAGGTAATAGAAGAAGCTTCGGTGATCTTGAAGACGATGAAGATGATATTTTCGGATCAACAACGGTAGCGCCTGGTGTTAGAACTGGGATGATTTTGTCTCTCCGAGGAAGTCTTAAGAATTGTAAAGATGATCTTGCTTCATGTCAAAATGAGCTCGAGTCAGCAAAAACAGAGATTCAGAAGTGGAAGTCAGCGTTTCAGAATGAGTCCTTTGTTCCCGCTGGAAAATCTCCTGAACCAAGATTTTTGATTGATTATATTCAAAACCTAAAATCTTCTGAGAAATCTTTGAAAGAACAGTTAGAAATCGCAAAGAGAAAAGAAGCGTCATGCATTGTACAATATGCGAAACGGGAACAAGAAATGGCAGAATTGAAGTCAGCTGTTCGCGATTTGAAATCTCAACTCAAGCCAGCGTCAATGCAGGCGAGGAGGTTGTTACTGGATCCAGCAATTCATGAAGAATTTTCACGTCTGAAGAATCTAGTAGAGGAAAAAGACAAGAAGATCAAGGAACTCCAGGACAACATTGCAGCAGTTACTTTTACTCCTCAAAGCAAGAATGGAAAGATGCTTATGGCAAAGTGCAGAACCCTGCAAGAGGAAAATGAGGAGATTGGGCACCAAGCTGCCGAAGGAAAGATTCATGAACTAGCAATAAAGCTTGCAATGCAGAAGTCTCAAAACGCGGAACTTAGAAGTCAATTTGAAGGACTGTACAAACACATGGAGGAATTAACTAATGATGTTGAGAGATCAAATGAAACGGTGATAATATTGCAAGAGAAACTGGAAGAGAAAGAGAAGGAGATAGAGAGAGTAAAGAAAGGACTGGAAATTGTGTCTGAGCTAGTAGGTGACAAGAAAGATGAAGTTGATGAAATTGATGAAGATGCAAAAGAAGAAATTGCTGGTGGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0001510 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009506 GO:0009888 GO:0009987 GO:0010073 GO:0010468 GO:0016070 GO:0016071 GO:0016556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043484 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048507 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0071704 GO:0080009 GO:0080090 GO:0090304 GO:1901360 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Wtap

Protein Analysis

330

Amino Acids

37.21

Weight (kDa)

4.94

Isoelectric Point (pI)

55.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Wtap	PF17098	127 - 280	7.6e-55	WTAP/Mum2p family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54170
fragaria_vesca	FvH4_5g05840 FvH4_5g05840 FvH4_5g05840 FvH4_5g05840
malus_domestica	MD06G1169900.v1.1
prunus_persica	Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1
pyrus_communis	pycom06g15130
rosa_chinensis	RchiOBHm_Chr3g0448991 RchiOBHm_Chr7g0192981
rosa_laevigata	RLG00000004305 RLG00000014553
rosa_multiflora	Rmu_sc0002040.1_g000066 Rmu_sc0027188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262480
rosa_rugosa	Rorug05G0014700 Rorug07G0007000 Rorug07G0007100 Rorug07G0007200
rosa_samantha	Rh7AG132000 Rh7BG132800 Rh7CG136000 Rh7DG133900
rosa_wichuraiana	Rw7G011260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	690
AccII	CGCG	2 cut(s)	459, 758
AciI	CCGC	3 cut(s)	45, 288, 758
AclWI	GGATC	3 cut(s)	130, 509, 522
AcsI	RAATTY	1 cut(s)	533
AcuI	CTGAAG	2 cut(s)	51, 566
AfaI	GTAC	2 cut(s)	408, 788
AfiI	CCNNNNNNNGG	1 cut(s)	670
AflII	CTTAAG	1 cut(s)	182
AgsI	TTSAA	6 cut(s)	98, 332, 361, 445, 466, 779
AjiI	CACGTC	1 cut(s)	542
AjnI	CCWGG	3 cut(s)	59, 139, 588
AluBI	AGCT	6 cut(s)	84, 223, 452, 698, 733, 919
AluI	AGCT	6 cut(s)	84, 223, 452, 698, 733, 919
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	3 cut(s)	30, 171, 753
AlwI	GGATC	3 cut(s)	130, 509, 522
Ama87I	CYCGRG	1 cut(s)	224
ApeKI	GCWGC	3 cut(s)	47, 602, 698
ApoI	RAATTY	1 cut(s)	533
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AspLEI	GCGC	1 cut(s)	139
AsuHPI	GGTGA	3 cut(s)	101, 850, 938
AvaI	CYCGRG	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	693
BamHI	GGATCC	1 cut(s)	514
BanI	GGYRCC	1 cut(s)	690
BanII	GRGCYC	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	3 cut(s)	34, 614, 685
BcgI	CGANNNNNNTGC	2 cut(s)	29, 63
BciT130I	CCWGG	3 cut(s)	61, 141, 590
BcoDI	GTCTC	3 cut(s)	30, 171, 753
BfaI	CTAG	3 cut(s)	554, 722, 920
BfoI	RGCGCY	1 cut(s)	140
BfrI	CTTAAG	1 cut(s)	182
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	3 cut(s)	48, 603, 699
BlsI	GCNGC	3 cut(s)	49, 604, 700
Bme1390I	CCNGG	3 cut(s)	61, 141, 590
BmeT110I	CYCGRG	1 cut(s)	224
BmgBI	CACGTC	1 cut(s)	542
BmiI	GGNNCC	2 cut(s)	516, 692
BmrFI	CCNGG	3 cut(s)	61, 141, 590
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	2 cut(s)	630, 952
BmuI	ACTGGG	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	572
BpuEI	CTTGAG	1 cut(s)	461
BsaJI	CCNNGG	2 cut(s)	60, 172
BsaXI	ACNNNNNCTCC	2 cut(s)	601, 631
Bsc4I	CCNNNNNNNGG	1 cut(s)	670
Bse1I	ACTGG	4 cut(s)	157, 516, 864, 906
Bse3DI	GCAATG	2 cut(s)	597, 744
BseBI	CCWGG	3 cut(s)	61, 141, 590
BseDI	CCNNGG	2 cut(s)	60, 172
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	670
BseMI	GCAATG	2 cut(s)	597, 744
BseMII	CTCAG	2 cut(s)	339, 906
BseNI	ACTGG	4 cut(s)	157, 516, 864, 906
BseRI	GAGGAG	4 cut(s)	48, 514, 609, 695
BseSI	GKGCMC	1 cut(s)	693
BseXI	GCAGC	3 cut(s)	34, 614, 685
BsgI	GTGCAG	1 cut(s)	676
Bsh1236I	CGCG	2 cut(s)	459, 758
BshNI	GGYRCC	1 cut(s)	690
BsiHKAI	GWGCWC	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	670
BsmAI	GTCTC	3 cut(s)	30, 171, 753
BsmBI	CGTCTC	1 cut(s)	30
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	2 cut(s)	225, 693
Bsp1407I	TGTACA	2 cut(s)	406, 786
Bsp143I	GATC	6 cut(s)	91, 122, 199, 514, 576, 824
Bsp68I	TCGCGA	1 cut(s)	459
BspACI	CCGC	3 cut(s)	45, 288, 758
BspCNI	CTCAG	2 cut(s)	340, 907
BspFNI	CGCG	2 cut(s)	459, 758
BspHI	TCATGA	2 cut(s)	526, 715
BspLI	GGNNCC	2 cut(s)	516, 692
BspPI	GGATC	3 cut(s)	130, 509, 522
BspT107I	GGYRCC	1 cut(s)	690
BspTI	CTTAAG	1 cut(s)	182
BsrDI	GCAATG	2 cut(s)	597, 744
BsrGI	TGTACA	2 cut(s)	406, 786
BsrI	ACTGG	4 cut(s)	157, 516, 864, 906
BssECI	CCNNGG	2 cut(s)	60, 172
BssMI	GATC	6 cut(s)	91, 122, 199, 514, 576, 824
Bst2UI	CCWGG	3 cut(s)	61, 141, 590
Bst4CI	ACNGT	4 cut(s)	133, 369, 786, 838
Bst6I	CTCTTC	1 cut(s)	858
BstAFI	CTTAAG	1 cut(s)	182
BstAUI	TGTACA	2 cut(s)	406, 786
BstC8I	GCNNGC	3 cut(s)	483, 495, 735
BstDEI	CTNAG	3 cut(s)	348, 764, 915
BstENI	CCTNNNNNAGG	1 cut(s)	668
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	2 cut(s)	459, 758
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	6 cut(s)	94, 125, 202, 517, 579, 827
BstMAI	GTCTC	3 cut(s)	30, 171, 753
BstMBI	GATC	6 cut(s)	91, 122, 199, 514, 576, 824
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 62, 739
BstNI	CCWGG	3 cut(s)	61, 141, 590
BstSCI	CCNGG	3 cut(s)	59, 139, 588
BstSLI	GKGCMC	1 cut(s)	693
BstUI	CGCG	2 cut(s)	459, 758
BstV1I	GCAGC	3 cut(s)	34, 614, 685
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BtrI	CACGTC	1 cut(s)	542
BtsCI	GGATG	1 cut(s)	162
BtuMI	TCGCGA	1 cut(s)	459
Cac8I	GCNNGC	3 cut(s)	483, 495, 735
CciI	TCATGA	2 cut(s)	526, 715
CfoI	GCGC	1 cut(s)	139
CseI	GACGC	2 cut(s)	384, 474
Csp6I	GTAC	2 cut(s)	407, 787
CviAII	CATG	5 cut(s)	210, 399, 527, 716, 796
CviJI	RGCY	8 cut(s)	65, 84, 223, 452, 481, 698, 733, 919
CviKI_1	RGCY	8 cut(s)	65, 84, 223, 452, 481, 698, 733, 919
CviQI	GTAC	2 cut(s)	407, 787
DdeI	CTNAG	3 cut(s)	348, 764, 915
DpnI	GATC	6 cut(s)	93, 124, 201, 516, 578, 826
DpnII	GATC	6 cut(s)	91, 122, 199, 514, 576, 824
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
Ecl136II	GAGCTC	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	223
Eco57I	CTGAAG	2 cut(s)	51, 566
Eco88I	CYCGRG	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	223
EcoNI	CCTNNNNNAGG	1 cut(s)	668
EcoRII	CCWGG	3 cut(s)	59, 139, 588
EcoT22I	ATGCAT	1 cut(s)	404
EcoT38I	GRGCYC	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	30
FaeI	CATG	5 cut(s)	213, 402, 530, 719, 799
FaiI	YATR	8 cut(s)	211, 327, 400, 414, 528, 647, 717, 797
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FatI	CATG	5 cut(s)	209, 398, 526, 715, 795
FauI	CCCGC	1 cut(s)	295
Fnu4HI	GCNGC	3 cut(s)	48, 603, 699
FokI	GGATG	1 cut(s)	169
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	3 cut(s)	48, 603, 699
FspBI	CTAG	3 cut(s)	554, 722, 920
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	3 cut(s)	48, 603, 699
GsuI	CTGGAG	1 cut(s)	572
HaeII	RGCGCY	1 cut(s)	140
HgaI	GACGC	2 cut(s)	384, 474
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	5 cut(s)	213, 402, 530, 719, 799
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HindIII	AAGCTT	2 cut(s)	82, 731
HinfI	GANTC	6 cut(s)	41, 227, 244, 275, 550, 712
HphI	GGTGA	3 cut(s)	101, 850, 938
Hpy188I	TCNGA	7 cut(s)	122, 173, 249, 270, 349, 546, 916
Hpy188III	TCNNGA	5 cut(s)	95, 302, 458, 527, 716
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	698, 773, 868
HpyCH4III	ACNGT	4 cut(s)	133, 369, 786, 838
HpyCH4IV	ACGT	1 cut(s)	541
HpyCH4V	TGCA	9 cut(s)	402, 493, 602, 657, 667, 737, 742, 850, 965
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 62, 739
HpyF3I	CTNAG	3 cut(s)	348, 764, 915
HpySE526I	ACGT	1 cut(s)	541
Hsp92II	CATG	5 cut(s)	213, 402, 530, 719, 799
HspAI	GCGC	1 cut(s)	137
Kzo9I	GATC	6 cut(s)	91, 122, 199, 514, 576, 824
Lsp1109I	GCAGC	3 cut(s)	34, 614, 685
LweI	GCATC	2 cut(s)	630, 952
MaeI	CTAG	3 cut(s)	554, 722, 920
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	3 cut(s)	507, 607, 926
MalI	GATC	6 cut(s)	93, 124, 201, 516, 578, 826
MboI	GATC	6 cut(s)	91, 122, 199, 514, 576, 824
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	2 cut(s)	225, 693
MluCI	AATT	9 cut(s)	187, 440, 522, 533, 773, 803, 906, 951, 975
MlyI	GAGTC	2 cut(s)	236, 284
MnlI	CCTC	9 cut(s)	26, 167, 492, 495, 553, 630, 664, 673, 793
Mph1103I	ATGCAT	1 cut(s)	404
MseI	TTAA	2 cut(s)	183, 806
MspA1I	CMGCKG	3 cut(s)	47, 290, 452
MspCI	CTTAAG	1 cut(s)	182
MspR9I	CCNGG	3 cut(s)	61, 141, 590
MvaI	CCWGG	3 cut(s)	61, 141, 590
MvnI	CGCG	2 cut(s)	459, 758
MwoI	GCNNNNNNNGC	3 cut(s)	53, 62, 739
NdeII	GATC	6 cut(s)	91, 122, 199, 514, 576, 824
NlaIII	CATG	5 cut(s)	213, 402, 530, 719, 799
NlaIV	GGNNCC	2 cut(s)	516, 692
NmuCI	GTSAC	1 cut(s)	926
NruI	TCGCGA	1 cut(s)	459
NsiI	ATGCAT	1 cut(s)	404
PaeR7I	CTCGAG	1 cut(s)	224
PagI	TCATGA	2 cut(s)	526, 715
PfeI	GAWTC	4 cut(s)	41, 244, 550, 712
PfoI	TCCNGGA	1 cut(s)	588
PkrI	GCNGC	3 cut(s)	49, 604, 700
PleI	GAGTC	2 cut(s)	235, 283
PpsI	GAGTC	2 cut(s)	235, 283
Psp124BI	GAGCTC	1 cut(s)	225
Psp6I	CCWGG	3 cut(s)	59, 139, 588
PspGI	CCWGG	3 cut(s)	59, 139, 588
PspN4I	GGNNCC	2 cut(s)	516, 692
PspXI	VCTCGAGB	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	514
PvuII	CAGCTG	1 cut(s)	452
RruI	TCGCGA	1 cut(s)	459
RsaI	GTAC	2 cut(s)	408, 788
RsaNI	GTAC	2 cut(s)	407, 787
SacI	GAGCTC	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	183, 806
SatI	GCNGC	3 cut(s)	48, 603, 699
Sau3AI	GATC	6 cut(s)	91, 122, 199, 514, 576, 824
SchI	GAGTC	2 cut(s)	236, 284
ScrFI	CCNGG	3 cut(s)	61, 141, 590
SduI	GDGCHC	2 cut(s)	225, 693
SfaNI	GCATC	2 cut(s)	630, 952
Sfr274I	CTCGAG	1 cut(s)	224
SlaI	CTCGAG	1 cut(s)	224
SmlI	CTYRAG	3 cut(s)	182, 224, 476
SmoI	CTYRAG	3 cut(s)	182, 224, 476
Sse9I	AATT	9 cut(s)	187, 440, 522, 533, 773, 803, 906, 951, 975
SsiI	CCGC	3 cut(s)	45, 288, 758
SspI	AATATT	1 cut(s)	846
SspMI	CTAG	3 cut(s)	554, 722, 920
SstI	GAGCTC	1 cut(s)	225
StyD4I	CCNGG	3 cut(s)	59, 139, 588
TaaI	ACNGT	4 cut(s)	133, 369, 786, 838
TaiI	ACGT	1 cut(s)	544
TaqI	TCGA	1 cut(s)	225
TasI	AATT	9 cut(s)	187, 440, 522, 533, 773, 803, 906, 951, 975
TatI	WGTACW	2 cut(s)	406, 786
TfiI	GAWTC	4 cut(s)	41, 244, 550, 712
Tru1I	TTAA	2 cut(s)	183, 806
Tru9I	TTAA	2 cut(s)	183, 806
TseFI	GTSAC	1 cut(s)	926
TseI	GCWGC	3 cut(s)	47, 602, 698
Tsp45I	GTSAC	1 cut(s)	926
Vha464I	CTTAAG	1 cut(s)	182
XagI	CCTNNNNNAGG	1 cut(s)	668
XapI	RAATTY	1 cut(s)	533
XhoI	CTCGAG	1 cut(s)	224
XspI	CTAG	3 cut(s)	554, 722, 920
Zsp2I	ATGCAT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.