Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006769

Physical Location & Seq

Genomic Coordinates Forward (+)

543320 .. 543983

Gene Structure 664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0007100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTCTAAAGCTATTCCTGCCCTAGTTCTTGTATTCAGGATCCTTACCCTTGCAGCATGTGTTGCTTCTGGGCTGCTTCTCGTTCTCGACAACTTTAAAGATGAGGATGGTACGTATGTGCTTTCTGCAGCAGCAATTGGAGCAGCATACAGCCTACTACAGCTACCCTTTAACATATACTATGCTTCCACCAATAAGCGCTTGATACGCAACAGATGCATGCCGGAGTTTGATTTCTATTCCGACAAGGTAGTGACCTTGGTTCTAGCTTCGGGTGTGGGAGCTGGTTTTGCAGCGGGATTTGAGCTCAAAAAGTTTTTCAAACTATTACTTCAAGTGGCGTCACTAGGAATTGAAGACAACAACTTCGATCAAGAACTAGCCAAGTTCAATGACTTCTTTGAGAAGTCAATTATTTCCAGCGGAATTCTCTTGGTTGGAGCTGTTTGCATGGCTGTGGTTTCGATTCTCACTTCCATTACTCGGACTTCAAATTCGGGTTTCTTCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0001510 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009506 GO:0009888 GO:0009987 GO:0010073 GO:0010468 GO:0016070 GO:0016071 GO:0016556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043484 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048507 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0071704 GO:0080009 GO:0080090 GO:0090304 GO:1901360 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Wtap

Protein Analysis

170

Amino Acids

18.36

Weight (kDa)

6.23

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	6 - 100	2.9e-08	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54170
fragaria_vesca	FvH4_5g05840 FvH4_5g05840 FvH4_5g05840 FvH4_5g05840
malus_domestica	MD06G1169900.v1.1
prunus_persica	Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1
pyrus_communis	pycom06g15130
rosa_chinensis	RchiOBHm_Chr3g0448991 RchiOBHm_Chr7g0192981
rosa_laevigata	RLG00000004305 RLG00000014553
rosa_multiflora	Rmu_sc0002040.1_g000066 Rmu_sc0027188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262480
rosa_rugosa	Rorug05G0014700 Rorug07G0007000 Rorug07G0007100 Rorug07G0007200
rosa_samantha	Rh7AG132000 Rh7BG132800 Rh7CG136000 Rh7DG133900
rosa_wichuraiana	Rw7G011260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	296, 423
AclWI	GGATC	2 cut(s)	34, 47
AcsI	RAATTY	2 cut(s)	426, 493
AcyI	GRCGYC	1 cut(s)	341
AfaI	GTAC	1 cut(s)	112
AfeI	AGCGCT	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	483
AgsI	TTSAA	5 cut(s)	322, 335, 356, 391, 492
AluBI	AGCT	6 cut(s)	11, 163, 269, 284, 307, 443
AluI	AGCT	6 cut(s)	11, 163, 269, 284, 307, 443
Alw21I	GWGCWC	1 cut(s)	309
AlwI	GGATC	2 cut(s)	34, 47
Aor51HI	AGCGCT	1 cut(s)	200
ApeKI	GCWGC	6 cut(s)	53, 73, 128, 131, 143, 293
ApoI	RAATTY	2 cut(s)	426, 493
ArsI	GACNNNNNNTTYG	4 cut(s)	350, 382, 478, 510
AspLEI	GCGC	1 cut(s)	201
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BamHI	GGATCC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	6 cut(s)	60, 65, 140, 143, 155, 305
BccI	CCATC	1 cut(s)	101
BfaI	CTAG	4 cut(s)	23, 266, 347, 380
BfmI	CTRYAG	2 cut(s)	126, 158
BfoI	RGCGCY	1 cut(s)	202
BisI	GCNGC	6 cut(s)	54, 74, 129, 132, 144, 294
BlsI	GCNGC	6 cut(s)	55, 75, 130, 133, 145, 295
BmiI	GGNNCC	1 cut(s)	41
BmsI	GCATC	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	363
BsaAI	YACGTR	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	483
BseXI	GCAGC	6 cut(s)	60, 65, 140, 143, 155, 305
BsiHKAI	GWGCWC	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	39, 370
BspACI	CCGC	2 cut(s)	296, 423
BspLI	GGNNCC	1 cut(s)	41
BspMAI	CTGCAG	1 cut(s)	130
BspPI	GGATC	2 cut(s)	34, 47
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	39, 370
BssNI	GRCGYC	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	258
BstACI	GRCGYC	1 cut(s)	341
BstAPI	GCANNNNNTGC	2 cut(s)	62, 216
BstBAI	YACGTR	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	112
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	2 cut(s)	42, 373
BstMBI	GATC	2 cut(s)	39, 370
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 62, 140, 207, 216, 290
BstNSI	RCATGY	2 cut(s)	60, 223
BstSFI	CTRYAG	2 cut(s)	126, 158
BstSNI	TACGTA	1 cut(s)	114
BstV1I	GCAGC	6 cut(s)	60, 65, 140, 143, 155, 305
BstV2I	GAAGAC	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	221
CfoI	GCGC	1 cut(s)	201
CseI	GACGC	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	3 cut(s)	57, 220, 451
CviQI	GTAC	1 cut(s)	111
DpnI	GATC	2 cut(s)	41, 372
DpnII	GATC	2 cut(s)	39, 370
DraI	TTTAAA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	307
Eco105I	TACGTA	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	309
Eco47III	AGCGCT	1 cut(s)	200
Eco53kI	GAGCTC	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	307
EcoRI	GAATTC	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	3 cut(s)	60, 223, 454
FaiI	YATR	8 cut(s)	58, 117, 148, 176, 178, 183, 221, 452
FatI	CATG	3 cut(s)	56, 219, 450
FauI	CCCGC	1 cut(s)	289
Fnu4HI	GCNGC	6 cut(s)	54, 74, 129, 132, 144, 294
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	6 cut(s)	54, 74, 129, 132, 144, 294
FspBI	CTAG	4 cut(s)	23, 266, 347, 380
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	6 cut(s)	54, 74, 129, 132, 144, 294
HaeII	RGCGCY	1 cut(s)	202
HapII	CCGG	1 cut(s)	224
HgaI	GACGC	1 cut(s)	330
HhaI	GCGC	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	341
Hin1II	CATG	3 cut(s)	60, 223, 454
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	466
HpaII	CCGG	1 cut(s)	224
Hpy188I	TCNGA	3 cut(s)	244, 486, 509
Hpy188III	TCNNGA	3 cut(s)	37, 86, 374
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	5 cut(s)	53, 128, 219, 293, 450
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 62, 140, 207, 216, 290
HpySE526I	ACGT	1 cut(s)	113
Hsp92I	GRCGYC	1 cut(s)	341
Hsp92II	CATG	3 cut(s)	60, 223, 454
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	39, 370
LmnI	GCTCC	3 cut(s)	140, 281, 440
LpnPI	CCDG	6 cut(s)	22, 30, 54, 237, 270, 433
Lsp1109I	GCAGC	6 cut(s)	60, 65, 140, 143, 155, 305
LweI	GCATC	1 cut(s)	206
MaeI	CTAG	4 cut(s)	23, 266, 347, 380
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	2 cut(s)	253, 342
MalI	GATC	2 cut(s)	41, 372
MboI	GATC	2 cut(s)	39, 370
MboII	GAAGA	2 cut(s)	368, 496
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	5 cut(s)	135, 351, 411, 426, 493
MmeI	TCCRAC	2 cut(s)	267, 418
MnlI	CCTC	1 cut(s)	97
Mph1103I	ATGCAT	1 cut(s)	221
MseI	TTAA	2 cut(s)	96, 171
MslI	CAYNNNNRTG	1 cut(s)	455
MspA1I	CMGCKG	2 cut(s)	296, 423
MspI	CCGG	1 cut(s)	224
MunI	CAATTG	1 cut(s)	135
MwoI	GCNNNNNNNGC	6 cut(s)	17, 62, 140, 207, 216, 290
NdeII	GATC	2 cut(s)	39, 370
NlaIII	CATG	3 cut(s)	60, 223, 454
NlaIV	GGNNCC	1 cut(s)	41
NmuCI	GTSAC	2 cut(s)	253, 342
NsiI	ATGCAT	1 cut(s)	221
NspI	RCATGY	2 cut(s)	60, 223
PaeI	GCATGC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	466
PkrI	GCNGC	6 cut(s)	55, 75, 130, 133, 145, 295
Ppu21I	YACGTR	1 cut(s)	114
Psp124BI	GAGCTC	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	39
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	1 cut(s)	455
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	96, 171
SatI	GCNGC	6 cut(s)	54, 74, 129, 132, 144, 294
Sau3AI	GATC	2 cut(s)	39, 370
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	9 cut(s)	13, 116, 165, 252, 260, 271, 286, 309, 445
SfaNI	GCATC	1 cut(s)	206
SfcI	CTRYAG	2 cut(s)	126, 158
SmiMI	CAYNNNNRTG	1 cut(s)	455
SnaBI	TACGTA	1 cut(s)	114
SphI	GCATGC	1 cut(s)	223
Sse9I	AATT	5 cut(s)	135, 351, 411, 426, 493
SsiI	CCGC	2 cut(s)	296, 423
SspMI	CTAG	4 cut(s)	23, 266, 347, 380
SstI	GAGCTC	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	258
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	3 cut(s)	87, 369, 464
TasI	AATT	5 cut(s)	135, 351, 411, 426, 493
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	2 cut(s)	96, 171
Tru9I	TTAA	2 cut(s)	96, 171
TseFI	GTSAC	2 cut(s)	253, 342
TseI	GCWGC	6 cut(s)	53, 73, 128, 131, 143, 293
Tsp45I	GTSAC	2 cut(s)	253, 342
XapI	RAATTY	2 cut(s)	426, 493
XceI	RCATGY	2 cut(s)	60, 223
XspI	CTAG	4 cut(s)	23, 266, 347, 380
Zsp2I	ATGCAT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.