Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006769

Physical Location & Seq

Genomic Coordinates Forward (+)

54623197 .. 54625584

Gene Structure 2388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014553

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGACTATTTTGACATTGGTTGTCTTCCAGTTTCATAGCCTCAGACGCTCACTGCCTCACTCTCTGCCCTCACTCCATTCTCTAACCCAGACGAGCAAGACGATCGAAAGATTCAAAACCCAGACGAGCAAGACGTTCGCACTCAAAGATCGGACGATCACCCCGACGAGCAAGACCATTGCGTCTTCGATTTGCTATCTGGACCCCAGTCTTCGACCACCATCAATCCGTCTTCTTGAAGGCAGAGGCCGACCTGGAAAGCAGGTGCAGGCGTGCAGCTATCGGACTCCAAGATCCGACAACTATCGGAGTCCGGAAAGCAGGTGCAGGTGCAGGCTCTGTTTTGAGAAATTTGTGATTCTGTGCAGCCAAAACTGGGCAGTTAGCATGTACCTACAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.43

Weight (kDa)

10.25

Isoelectric Point (pI)

55.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54170
fragaria_vesca	FvH4_5g05840 FvH4_5g05840 FvH4_5g05840 FvH4_5g05840
malus_domestica	MD06G1169900.v1.1
prunus_persica	Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1
pyrus_communis	pycom06g15130
rosa_chinensis	RchiOBHm_Chr3g0448991 RchiOBHm_Chr7g0192981
rosa_laevigata	RLG00000004305 RLG00000014553
rosa_multiflora	Rmu_sc0002040.1_g000066 Rmu_sc0027188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262480
rosa_rugosa	Rorug05G0014700 Rorug07G0007000 Rorug07G0007100 Rorug07G0007200
rosa_samantha	Rh7AG132000 Rh7BG132800 Rh7CG136000 Rh7DG133900
rosa_wichuraiana	Rw7G011260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	253, 312, 318
AasI	GACNNNNNNGTC	1 cut(s)	181
Acc36I	ACCTGC	3 cut(s)	253, 312, 318
AccIII	TCCGGA	1 cut(s)	313
AclWI	GGATC	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	350
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	115, 239
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	1 cut(s)	279
AluI	AGCT	1 cut(s)	279
AlwI	GGATC	1 cut(s)	288
AlwNI	CAGNNNCTG	1 cut(s)	339
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	2 cut(s)	276, 366
ApoI	RAATTY	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	202
BbsI	GAAGAC	4 cut(s)	16, 177, 203, 224
BbvI	GCAGC	2 cut(s)	288, 378
BccI	CCATC	1 cut(s)	229
BcgI	CGANNNNNNTGC	4 cut(s)	85, 118, 119, 152
BciT130I	CCWGG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	395
BfuAI	ACCTGC	3 cut(s)	253, 312, 318
BisI	GCNGC	2 cut(s)	277, 367
BlsI	GCNGC	2 cut(s)	278, 368
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	255
BmrI	ACTGGG	2 cut(s)	201, 385
BmuI	ACTGGG	2 cut(s)	201, 385
BoxI	GACNNNNGTC	1 cut(s)	207
BpiI	GAAGAC	4 cut(s)	16, 177, 203, 224
BsaWI	WCCGGW	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse1I	ACTGG	3 cut(s)	28, 207, 380
Bse3DI	GCAATG	1 cut(s)	177
BseAI	TCCGGA	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	55
BseNI	ACTGG	3 cut(s)	28, 207, 380
BseXI	GCAGC	2 cut(s)	288, 378
BsgI	GTGCAG	5 cut(s)	287, 295, 346, 352, 385
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	249
BsiEI	CGRYCG	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	376
BsnI	GGCC	1 cut(s)	249
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	102, 148, 156, 293
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	1 cut(s)	54
BspEI	TCCGGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	204
BspMI	ACCTGC	3 cut(s)	253, 312, 318
BspPI	GGATC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	3 cut(s)	28, 207, 380
BssMI	GATC	4 cut(s)	102, 148, 156, 293
Bst2UI	CCWGG	1 cut(s)	255
BstC8I	GCNNGC	3 cut(s)	270, 274, 335
BstDEI	CTNAG	1 cut(s)	41
BstKTI	GATC	4 cut(s)	105, 151, 159, 296
BstMBI	GATC	4 cut(s)	102, 148, 156, 293
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	391
BstPAI	GACNNNNGTC	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	253
BstSFI	CTRYAG	1 cut(s)	395
BstV1I	GCAGC	2 cut(s)	288, 378
BstV2I	GAAGAC	4 cut(s)	16, 177, 203, 224
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	249
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	50
BveI	ACCTGC	3 cut(s)	253, 312, 318
Cac8I	GCNNGC	3 cut(s)	270, 274, 335
CaiI	CAGNNNCTG	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	202
CseI	GACGC	2 cut(s)	54, 171
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	1 cut(s)	388
CviJI	RGCY	5 cut(s)	39, 249, 279, 337, 369
CviKI_1	RGCY	5 cut(s)	39, 249, 279, 337, 369
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	4 cut(s)	104, 150, 158, 295
DpnII	GATC	4 cut(s)	102, 148, 156, 293
DrdI	GACNNNNNNGTC	1 cut(s)	181
DseDI	GACNNNNNNGTC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	253
FaeI	CATG	1 cut(s)	391
FaiI	YATR	2 cut(s)	36, 389
FatI	CATG	1 cut(s)	387
Fnu4HI	GCNGC	2 cut(s)	277, 367
Fsp4HI	GCNGC	2 cut(s)	277, 367
GluI	GCNGC	2 cut(s)	277, 367
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	1 cut(s)	314
HgaI	GACGC	2 cut(s)	54, 171
Hin1II	CATG	1 cut(s)	391
HinfI	GANTC	4 cut(s)	111, 286, 310, 358
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	1 cut(s)	151
Hpy188I	TCNGA	5 cut(s)	44, 153, 285, 298, 309
Hpy188III	TCNNGA	3 cut(s)	200, 236, 314
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	5 cut(s)	268, 276, 327, 333, 366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	134
Hsp92II	CATG	1 cut(s)	391
Kpn2I	TCCGGA	1 cut(s)	313
Kzo9I	GATC	4 cut(s)	102, 148, 156, 293
Lsp1109I	GCAGC	2 cut(s)	288, 378
MaeII	ACGT	1 cut(s)	134
MalI	GATC	4 cut(s)	104, 150, 158, 295
MboI	GATC	4 cut(s)	102, 148, 156, 293
MboII	GAAGA	4 cut(s)	16, 177, 203, 224
MflI	RGATCY	1 cut(s)	293
MluCI	AATT	1 cut(s)	350
MlyI	GAGTC	2 cut(s)	280, 319
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	4 cut(s)	50, 66, 79, 239
MroI	TCCGGA	1 cut(s)	313
MspI	CCGG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	45
NdeII	GATC	4 cut(s)	102, 148, 156, 293
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	1 cut(s)	204
NspI	RCATGY	1 cut(s)	391
PaqCI	CACCTGC	3 cut(s)	253, 312, 318
PcsI	WCGNNNNNNNCGW	3 cut(s)	98, 131, 161
PfeI	GAWTC	2 cut(s)	111, 358
PkrI	GCNGC	2 cut(s)	278, 368
Ple19I	CGATCG	1 cut(s)	105
PleI	GAGTC	2 cut(s)	280, 318
PpsI	GAGTC	2 cut(s)	280, 318
PshAI	GACNNNNGTC	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	293
PvuI	CGATCG	1 cut(s)	105
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SatI	GCNGC	2 cut(s)	277, 367
Sau3AI	GATC	4 cut(s)	102, 148, 156, 293
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	2 cut(s)	280, 319
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	7 cut(s)	137, 256, 267, 281, 326, 332, 396
SfcI	CTRYAG	1 cut(s)	395
SinI	GGWCC	1 cut(s)	202
Sse9I	AATT	1 cut(s)	350
StyD4I	CCNGG	1 cut(s)	253
TaiI	ACGT	1 cut(s)	137
TaqI	TCGA	3 cut(s)	105, 188, 214
TasI	AATT	1 cut(s)	350
TfiI	GAWTC	2 cut(s)	111, 358
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	2 cut(s)	276, 366
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	1 cut(s)	350
XceI	RCATGY	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.