Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006769

Physical Location & Seq

Genomic Coordinates Reverse (-)

14538585 .. 14543195

Gene Structure 4611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G169400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCTACCCACACTCGTATCGATGACGATGATGATTTTGGAGGCGATTTTCCTGGAGCTCACAATAACAGGCGGCCTGGTAAAAAGAGAAGCTTTGGGGATCTTGAGGACGAAGAAGACGATTTTTTTGGCTCAAAACAGGGTAACTCAAAAGTTGAAGAAACTGCTCCTGGTGTTGCAACAGGAATGATTTTGTCTCTTCGTGAGAGTCTTCAAAACTGTAAAGATACTCTTGCAACATGCCAAACGGAACTTGAAGCTGCAAAATCTGAGATTCGAAAGTGGCATTCTTCATTTCAGAATGAACACTTCATAACTCCCGGAACTTCTCCCGATCCTAAATTGGTCATCAATTATCTTCAATCCCTGAAGAACTCCGAGGAATTGTTAAAAGAACAGTTAGAGAAAGCAAAGAAAAAGGAAGCTGCGTTTATTGTCACATTTGCAAAACGGGAGCAGGAGATAGCAGAGCTCAAGTCTGCAGTTCGGGATCTTAAAGCTCAACTGAAGCCACCATCAATGCAGGCAAGAAGATTGTTACTTGATCCAGCAATTCATGAAGAGTTTACTCGTCTAAAGAATTTGGTTGAGGAGAAGGAGAAAAAGGTGAAGGAGTTGAATGACAACATTGCTGCTGTTCAATTTACTCCTACAAGCAAGATGGGGAAGCAGTTAATGGCTAAATGTAGGACCCTGCAAGAGGAAAATGAGGAGATAGGCAATGAAGCTTCTGAGGGAAAGATGCATGAATTATCTATGAAACTTGCTTTGCAAAAATCCCAAAATGCAGAACTGAGAAGTCAATTTGAAGGATTGCACAAACATATGGAGGGGCTCACAAATGACGTTGAAAGATCAAATGAAATGGTGCGTATCATGCAAGAGCAGCTAGATGAGAGAGATTGTGAGATCAAACGGTTAAAGCAGGAGCTGGAGCAGAAGAGCTTAATAGAGGAGGAGAAAGCAGAGCCATCTTCTGATAGTAGGAAAGTCAGCGACGAAGTGATTGAGTCTGAGGAAGTCACCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0001510 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009506 GO:0009888 GO:0009987 GO:0010073 GO:0010468 GO:0016070 GO:0016071 GO:0016556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043484 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048507 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0071704 GO:0080009 GO:0080090 GO:0090304 GO:1901360 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Wtap

Protein Analysis

344

Amino Acids

39.09

Weight (kDa)

5.18

Isoelectric Point (pI)

60.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54170
fragaria_vesca	FvH4_5g05840 FvH4_5g05840 FvH4_5g05840 FvH4_5g05840
malus_domestica	MD06G1169900.v1.1
prunus_persica	Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1
pyrus_communis	pycom06g15130
rosa_chinensis	RchiOBHm_Chr3g0448991 RchiOBHm_Chr7g0192981
rosa_laevigata	RLG00000004305 RLG00000014553
rosa_multiflora	Rmu_sc0002040.1_g000066 Rmu_sc0027188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262480
rosa_rugosa	Rorug05G0014700 Rorug07G0007000 Rorug07G0007100 Rorug07G0007200
rosa_samantha	Rh7AG132000 Rh7BG132800 Rh7CG136000 Rh7DG133900
rosa_wichuraiana	Rw7G011260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	4 cut(s)	108, 329, 498, 539
AcsI	RAATTY	1 cut(s)	580
AcuI	CTGAAG	2 cut(s)	389, 527
AfiI	CCNNNNNNNGG	1 cut(s)	700
AgsI	TTSAA	8 cut(s)	158, 215, 257, 362, 619, 641, 809, 851
AjnI	CCWGG	3 cut(s)	52, 76, 169
Alw21I	GWGCWC	2 cut(s)	61, 474
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	4 cut(s)	108, 329, 498, 539
AlwNI	CAGNNNCTG	1 cut(s)	931
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	4 cut(s)	260, 425, 632, 886
ApoI	RAATTY	1 cut(s)	580
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspS9I	GGNCC	1 cut(s)	690
AsuC2I	CCSGG	1 cut(s)	321
AsuHPI	GGTGA	2 cut(s)	619, 1015
AsuII	TTCGAA	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	690
BaeI	ACNNNNGTAYC	1 cut(s)	34
BanII	GRGCYC	3 cut(s)	61, 474, 837
BbsI	GAAGAC	2 cut(s)	123, 203
Bbv12I	GWGCWC	2 cut(s)	61, 474
BbvI	GCAGC	4 cut(s)	247, 412, 619, 898
BccI	CCATC	3 cut(s)	523, 655, 979
BciT130I	CCWGG	3 cut(s)	54, 78, 171
BcnI	CCSGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	890
BfmI	CTRYAG	1 cut(s)	480
BisI	GCNGC	5 cut(s)	74, 261, 426, 633, 887
BlsI	GCNGC	5 cut(s)	75, 262, 427, 634, 888
Bme1390I	CCNGG	4 cut(s)	54, 78, 171, 321
Bme18I	GGWCC	1 cut(s)	690
BmgT120I	GGNCC	1 cut(s)	690
BmiI	GGNNCC	1 cut(s)	692
BmrFI	CCNGG	4 cut(s)	54, 78, 171, 321
BmsI	GCATC	1 cut(s)	732
BpiI	GAAGAC	2 cut(s)	123, 203
BpmI	CTGGAG	2 cut(s)	75, 953
Bpu14I	TTCGAA	1 cut(s)	277
BpuEI	CTTGAG	2 cut(s)	125, 458
BpuMI	CCSGG	1 cut(s)	321
Bsa29I	ATCGAT	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	1 cut(s)	700
Bse3DI	GCAATG	2 cut(s)	627, 727
BseBI	CCWGG	3 cut(s)	54, 78, 171
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	700
BseMI	GCAATG	2 cut(s)	627, 727
BseMII	CTCAG	4 cut(s)	261, 723, 785, 1005
BseRI	GAGGAG	4 cut(s)	605, 725, 968, 971
BseXI	GCAGC	4 cut(s)	247, 412, 619, 898
BshFI	GGCC	1 cut(s)	76
BshVI	ATCGAT	1 cut(s)	21
BsiHKAI	GWGCWC	2 cut(s)	61, 474
BsiSI	CCGG	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	700
BsmAI	GTCTC	1 cut(s)	201
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	76
Bsp119I	TTCGAA	1 cut(s)	277
Bsp1286I	GDGCHC	3 cut(s)	61, 474, 837
Bsp143I	GATC	6 cut(s)	100, 334, 490, 544, 854, 909
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	4 cut(s)	262, 724, 786, 1006
BspDI	ATCGAT	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	1 cut(s)	692
BspMAI	CTGCAG	1 cut(s)	484
BspPI	GGATC	4 cut(s)	108, 329, 498, 539
BspQI	GCTCTTC	1 cut(s)	935
BspT104I	TTCGAA	1 cut(s)	277
BsrDI	GCAATG	2 cut(s)	627, 727
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	6 cut(s)	100, 334, 490, 544, 854, 909
Bst2UI	CCWGG	3 cut(s)	54, 78, 171
Bst4CI	ACNGT	3 cut(s)	221, 399, 918
Bst6I	CTCTTC	3 cut(s)	204, 555, 935
BstBI	TTCGAA	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	525
BstDEI	CTNAG	4 cut(s)	270, 732, 794, 1014
BstENI	CCTNNNNNAGG	1 cut(s)	698
BstKTI	GATC	6 cut(s)	103, 337, 493, 547, 857, 912
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	6 cut(s)	100, 334, 490, 544, 854, 909
BstMWI	GCNNNNNNNGC	2 cut(s)	877, 886
BstNI	CCWGG	3 cut(s)	54, 78, 171
BstNSI	RCATGY	1 cut(s)	243
BstSCI	CCNGG	4 cut(s)	52, 76, 169, 319
BstSFI	CTRYAG	1 cut(s)	480
BstV1I	GCAGC	4 cut(s)	247, 412, 619, 898
BstV2I	GAAGAC	2 cut(s)	123, 203
BstX2I	RGATCY	2 cut(s)	100, 490
BstYI	RGATCY	2 cut(s)	100, 490
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	76
BsuTUI	ATCGAT	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	525
CaiI	CAGNNNCTG	1 cut(s)	931
CciI	TCATGA	1 cut(s)	556
Cfr13I	GGNCC	1 cut(s)	690
ClaI	ATCGAT	1 cut(s)	21
CviAII	CATG	4 cut(s)	240, 557, 746, 877
DdeI	CTNAG	4 cut(s)	270, 732, 794, 1014
DpnI	GATC	6 cut(s)	102, 336, 492, 546, 856, 911
DpnII	GATC	6 cut(s)	100, 334, 490, 544, 854, 909
Eam1104I	CTCTTC	3 cut(s)	204, 555, 935
EarI	CTCTTC	3 cut(s)	204, 555, 935
Ecl136II	GAGCTC	2 cut(s)	59, 472
Eco24I	GRGCYC	3 cut(s)	61, 474, 837
Eco47I	GGWCC	1 cut(s)	690
Eco53kI	GAGCTC	2 cut(s)	59, 472
Eco57I	CTGAAG	2 cut(s)	389, 527
EcoICRI	GAGCTC	2 cut(s)	59, 472
EcoNI	CCTNNNNNAGG	1 cut(s)	698
EcoO109I	RGGNCCY	1 cut(s)	690
EcoRII	CCWGG	3 cut(s)	52, 76, 169
EcoT22I	ATGCAT	1 cut(s)	747
EcoT38I	GRGCYC	3 cut(s)	61, 474, 837
FaeI	CATG	4 cut(s)	243, 560, 749, 880
FaiI	YATR	8 cut(s)	241, 314, 558, 747, 758, 825, 827, 878
FalI	AAGNNNNNCTT	4 cut(s)	77, 109, 216, 248
FatI	CATG	4 cut(s)	239, 556, 745, 876
FauNDI	CATATG	1 cut(s)	825
Fnu4HI	GCNGC	5 cut(s)	74, 261, 426, 633, 887
FriOI	GRGCYC	3 cut(s)	61, 474, 837
Fsp4HI	GCNGC	5 cut(s)	74, 261, 426, 633, 887
FspBI	CTAG	1 cut(s)	890
GluI	GCNGC	5 cut(s)	74, 261, 426, 633, 887
GsuI	CTGGAG	2 cut(s)	75, 953
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	1 cut(s)	321
Hin1II	CATG	4 cut(s)	243, 560, 749, 880
HindIII	AAGCTT	2 cut(s)	91, 726
HinfI	GANTC	3 cut(s)	208, 274, 1010
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	2 cut(s)	619, 1015
Hpy166II	GTNNAC	1 cut(s)	567
Hpy188I	TCNGA	6 cut(s)	271, 300, 379, 733, 979, 1015
Hpy188III	TCNNGA	5 cut(s)	104, 203, 332, 488, 557
Hpy8I	GTNNAC	1 cut(s)	567
Hpy99I	CGWCG	1 cut(s)	1001
HpyAV	CCTTC	3 cut(s)	589, 604, 803
HpyCH4III	ACNGT	3 cut(s)	221, 399, 918
HpyCH4IV	ACGT	1 cut(s)	846
HpyF10VI	GCNNNNNNNGC	2 cut(s)	877, 886
HpyF3I	CTNAG	4 cut(s)	270, 732, 794, 1014
HpySE526I	ACGT	1 cut(s)	846
Hsp92II	CATG	4 cut(s)	243, 560, 749, 880
Kzo9I	GATC	6 cut(s)	100, 334, 490, 544, 854, 909
LguI	GCTCTTC	1 cut(s)	935
LmnI	GCTCC	5 cut(s)	56, 172, 454, 928, 934
Lsp1109I	GCAGC	4 cut(s)	247, 412, 619, 898
LweI	GCATC	1 cut(s)	732
MaeI	CTAG	1 cut(s)	890
MaeII	ACGT	1 cut(s)	846
MaeIII	GTNAC	4 cut(s)	143, 436, 537, 1021
MalI	GATC	6 cut(s)	102, 336, 492, 546, 856, 911
MboI	GATC	6 cut(s)	100, 334, 490, 544, 854, 909
MflI	RGATCY	2 cut(s)	100, 490
MhlI	GDGCHC	3 cut(s)	61, 474, 837
MluCI	AATT	8 cut(s)	341, 352, 383, 552, 580, 641, 749, 803
MlyI	GAGTC	2 cut(s)	217, 1019
Mph1103I	ATGCAT	1 cut(s)	747
MseI	TTAA	5 cut(s)	389, 495, 674, 920, 947
MspI	CCGG	1 cut(s)	321
MspR9I	CCNGG	4 cut(s)	54, 78, 171, 321
Mva1269I	GAATGC	1 cut(s)	286
MvaI	CCWGG	3 cut(s)	54, 78, 171
MwoI	GCNNNNNNNGC	2 cut(s)	877, 886
NciI	CCSGG	1 cut(s)	321
NdeI	CATATG	1 cut(s)	825
NdeII	GATC	6 cut(s)	100, 334, 490, 544, 854, 909
NlaIII	CATG	4 cut(s)	243, 560, 749, 880
NlaIV	GGNNCC	1 cut(s)	692
NmuCI	GTSAC	2 cut(s)	436, 1021
NsiI	ATGCAT	1 cut(s)	747
NspI	RCATGY	1 cut(s)	243
NspV	TTCGAA	1 cut(s)	277
PagI	TCATGA	1 cut(s)	556
PciSI	GCTCTTC	1 cut(s)	935
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	274
PfoI	TCCNGGA	2 cut(s)	52, 319
PkrI	GCNGC	5 cut(s)	75, 262, 427, 634, 888
PleI	GAGTC	2 cut(s)	216, 1018
PpsI	GAGTC	2 cut(s)	216, 1018
PpuMI	RGGWCCY	1 cut(s)	690
Psp124BI	GAGCTC	2 cut(s)	61, 474
Psp5II	RGGWCCY	1 cut(s)	690
Psp6I	CCWGG	3 cut(s)	52, 76, 169
PspGI	CCWGG	3 cut(s)	52, 76, 169
PspN4I	GGNNCC	1 cut(s)	692
PspPI	GGNCC	1 cut(s)	690
PspPPI	RGGWCCY	1 cut(s)	690
PstI	CTGCAG	1 cut(s)	484
PstNI	CAGNNNCTG	1 cut(s)	931
PsuI	RGATCY	2 cut(s)	100, 490
SacI	GAGCTC	2 cut(s)	61, 474
SapI	GCTCTTC	1 cut(s)	935
SaqAI	TTAA	5 cut(s)	389, 495, 674, 920, 947
SatI	GCNGC	5 cut(s)	74, 261, 426, 633, 887
Sau3AI	GATC	6 cut(s)	100, 334, 490, 544, 854, 909
Sau96I	GGNCC	1 cut(s)	690
SchI	GAGTC	2 cut(s)	217, 1019
ScrFI	CCNGG	4 cut(s)	54, 78, 171, 321
SduI	GDGCHC	3 cut(s)	61, 474, 837
SfaNI	GCATC	1 cut(s)	732
SfcI	CTRYAG	1 cut(s)	480
SfuI	TTCGAA	1 cut(s)	277
SinI	GGWCC	1 cut(s)	690
SmlI	CTYRAG	2 cut(s)	104, 473
SmoI	CTYRAG	2 cut(s)	104, 473
Sse9I	AATT	8 cut(s)	341, 352, 383, 552, 580, 641, 749, 803
SsiI	CCGC	1 cut(s)	73
SspMI	CTAG	1 cut(s)	890
SstI	GAGCTC	2 cut(s)	61, 474
StyD4I	CCNGG	4 cut(s)	52, 76, 169, 319
TaaI	ACNGT	3 cut(s)	221, 399, 918
TaiI	ACGT	1 cut(s)	849
TaqI	TCGA	2 cut(s)	21, 277
TasI	AATT	8 cut(s)	341, 352, 383, 552, 580, 641, 749, 803
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	274
Tru1I	TTAA	5 cut(s)	389, 495, 674, 920, 947
Tru9I	TTAA	5 cut(s)	389, 495, 674, 920, 947
TseFI	GTSAC	2 cut(s)	436, 1021
TseI	GCWGC	4 cut(s)	260, 425, 632, 886
Tsp45I	GTSAC	2 cut(s)	436, 1021
TspDTI	ATGAA	9 cut(s)	282, 301, 318, 545, 573, 738, 762, 773, 876
TspGWI	ACGGA	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	690
XagI	CCTNNNNNAGG	1 cut(s)	698
XapI	RAATTY	1 cut(s)	580
XceI	RCATGY	1 cut(s)	243
XspI	CTAG	1 cut(s)	890
Zsp2I	ATGCAT	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.