Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006769

Physical Location & Seq

Genomic Coordinates Reverse (-)

9890827 .. 9895591

Gene Structure 4765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG132800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGATCCCCACACTCGCCTCGATGACGATGACGATTTCGGAGGTGACTTTCCGGGAACTAGCGGTGCCCGCCGGTCAGGTAACAAGAGAAGCTTTGGGGAGATTGAGGACGAAGATGATTTCTTTGGCTCAAAGCAGGTTAAAGCAAAAGTCGAAGAAACTGCTCCTGGTGTTGCAACAGGAATGATTTTGTCTCTGCGTGAGAGTCTCCAGACCTGTAAGGATGATCTTGCAAAGTGCCAAATGGAATATGATGCTGCAAAATCTGAGGTTCAGAAGTGGCATTCTGCATTTCAGAATGAACCCTTTATAAATCCGGGGACTTCTCCTGATCCTACATTAGTCATCAATTATCTTCAGACCCTGAAAAACTCCGAGGAGTCACTGAAAGAACAGTTGGAGAAAGCAAAGAAAAAGGAAGCTGCATTCATAGTTACATTTGCAAAACGGGAGCAGGAGGTCGCAGAGCTCAAGTCTGCAGTTCGGGATCTTAGAGCTCAACTCAAGCCACCATCATTGCAGGCAAGAAAATTGTTGCTTGATCCAGCAATTCATGAAGAATTTACTCGTCTAAAGAATTTGGTTGAGGAGAAAGAAAAAAGATTGAAGCAGTTCCAGGAAGATGTCGCTGCCAATAATTTTACTCCAACAAGCAAGATGGGGAAACAGTTAATGGCTAAATGTAAGACCCTGCAAGAGGAAAATGAGGAGATCGGCAATGAAGCATCTGAGGGAAAGGTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0001510 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009506 GO:0009888 GO:0009987 GO:0010073 GO:0010468 GO:0016070 GO:0016071 GO:0016556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043484 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048507 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0071704 GO:0080009 GO:0080090 GO:0090304 GO:1901360 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Wtap

Protein Analysis

248

Amino Acids

27.9

Weight (kDa)

5.21

Isoelectric Point (pI)

54.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Wtap	PF17098	135 - 247	6.6e-40	WTAP/Mum2p family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54170
fragaria_vesca	FvH4_5g05840 FvH4_5g05840 FvH4_5g05840 FvH4_5g05840
malus_domestica	MD06G1169900.v1.1
prunus_persica	Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1
pyrus_communis	pycom06g15130
rosa_chinensis	RchiOBHm_Chr3g0448991 RchiOBHm_Chr7g0192981
rosa_laevigata	RLG00000004305 RLG00000014553
rosa_multiflora	Rmu_sc0002040.1_g000066 Rmu_sc0027188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262480
rosa_rugosa	Rorug05G0014700 Rorug07G0007000 Rorug07G0007100 Rorug07G0007200
rosa_samantha	Rh7AG132000 Rh7BG132800 Rh7CG136000 Rh7DG133900
rosa_wichuraiana	Rw7G011260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	127
AccB1I	GGYRCC	1 cut(s)	65
AciI	CCGC	2 cut(s)	63, 70
AclWI	GGATC	4 cut(s)	12, 326, 495, 536
AcsI	RAATTY	2 cut(s)	560, 577
AcuI	CTGAAG	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	697
AgsI	TTSAA	1 cut(s)	607
AjnI	CCWGG	2 cut(s)	166, 615
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	4 cut(s)	93, 422, 469, 497
AluI	AGCT	4 cut(s)	93, 422, 469, 497
Alw21I	GWGCWC	2 cut(s)	471, 499
Alw26I	GTCTC	2 cut(s)	198, 212
AlwI	GGATC	4 cut(s)	12, 326, 495, 536
AlwNI	CAGNNNCTG	1 cut(s)	364
ApeKI	GCWGC	3 cut(s)	257, 422, 629
ApoI	RAATTY	2 cut(s)	560, 577
Asp700I	GAANNNNTTC	1 cut(s)	611
AsuC2I	CCSGG	2 cut(s)	54, 318
AsuHPI	GGTGA	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	70
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	2 cut(s)	471, 499
Bbv12I	GWGCWC	2 cut(s)	471, 499
BbvI	GCAGC	3 cut(s)	244, 409, 616
BccI	CCATC	2 cut(s)	520, 652
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	2 cut(s)	168, 617
BcnI	CCSGG	2 cut(s)	54, 318
BcoDI	GTCTC	2 cut(s)	198, 212
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	3 cut(s)	258, 423, 630
BlsI	GCNGC	3 cut(s)	259, 424, 631
Bme1390I	CCNGG	4 cut(s)	54, 168, 318, 617
BmiI	GGNNCC	2 cut(s)	6, 67
BmrFI	CCNGG	4 cut(s)	54, 168, 318, 617
BmsI	GCATC	2 cut(s)	244, 734
BplI	GAGNNNNNCTC	2 cut(s)	486, 518
BpmI	CTGGAG	1 cut(s)	194
BpuEI	CTTGAG	2 cut(s)	455, 488
BpuMI	CCSGG	2 cut(s)	54, 318
BsaJI	CCNNGG	2 cut(s)	317, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse118I	RCCGGY	1 cut(s)	72
Bse3DI	GCAATG	2 cut(s)	515, 724
BseBI	CCWGG	2 cut(s)	168, 617
BseDI	CCNNGG	2 cut(s)	317, 375
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMI	GCAATG	2 cut(s)	515, 724
BseMII	CTCAG	2 cut(s)	258, 720
BseRI	GAGGAG	3 cut(s)	392, 602, 722
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	3 cut(s)	244, 409, 616
BshNI	GGYRCC	1 cut(s)	65
BsiHKAI	GWGCWC	2 cut(s)	471, 499
BsiSI	CCGG	3 cut(s)	53, 73, 317
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmAI	GTCTC	2 cut(s)	198, 212
BsmFI	GGGAC	1 cut(s)	334
BsmI	GAATGC	2 cut(s)	283, 425
Bsp1286I	GDGCHC	3 cut(s)	70, 471, 499
Bsp143I	GATC	6 cut(s)	4, 226, 331, 487, 541, 711
BspACI	CCGC	2 cut(s)	63, 70
BspCNI	CTCAG	2 cut(s)	259, 721
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	2 cut(s)	6, 67
BspMAI	CTGCAG	1 cut(s)	481
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	4 cut(s)	12, 326, 495, 536
BspT107I	GGYRCC	1 cut(s)	65
BsrDI	GCAATG	2 cut(s)	515, 724
BsrFI	RCCGGY	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	317, 375
BssMI	GATC	6 cut(s)	4, 226, 331, 487, 541, 711
Bst2UI	CCWGG	2 cut(s)	168, 617
Bst4CI	ACNGT	2 cut(s)	396, 669
BstC8I	GCNNGC	2 cut(s)	70, 522
BstDEI	CTNAG	3 cut(s)	267, 491, 729
BstENI	CCTNNNNNAGG	1 cut(s)	695
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	6 cut(s)	7, 229, 334, 490, 544, 714
BstMAI	GTCTC	2 cut(s)	198, 212
BstMBI	GATC	6 cut(s)	4, 226, 331, 487, 541, 711
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	2 cut(s)	168, 617
BstSCI	CCNGG	4 cut(s)	52, 166, 316, 615
BstSFI	CTRYAG	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	3 cut(s)	244, 409, 616
BstX2I	RGATCY	2 cut(s)	4, 487
BstYI	RGATCY	2 cut(s)	4, 487
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	383
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	70, 522
CaiI	CAGNNNCTG	1 cut(s)	364
CciI	TCATGA	1 cut(s)	553
Cfr10I	RCCGGY	1 cut(s)	72
CspCI	CAANNNNNGTGG	2 cut(s)	498, 533
CviAII	CATG	1 cut(s)	554
CviJI	RGCY	7 cut(s)	93, 129, 422, 469, 497, 508, 677
CviKI_1	RGCY	7 cut(s)	93, 129, 422, 469, 497, 508, 677
DdeI	CTNAG	3 cut(s)	267, 491, 729
DpnI	GATC	6 cut(s)	6, 228, 333, 489, 543, 713
DpnII	GATC	6 cut(s)	4, 226, 331, 487, 541, 711
Ecl136II	GAGCTC	2 cut(s)	469, 497
Eco24I	GRGCYC	2 cut(s)	471, 499
Eco53kI	GAGCTC	2 cut(s)	469, 497
Eco57I	CTGAAG	1 cut(s)	341
EcoICRI	GAGCTC	2 cut(s)	469, 497
EcoNI	CCTNNNNNAGG	1 cut(s)	695
EcoRII	CCWGG	2 cut(s)	166, 615
EcoT38I	GRGCYC	2 cut(s)	471, 499
FaeI	CATG	1 cut(s)	557
FaiI	YATR	5 cut(s)	252, 311, 431, 555, 745
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	1 cut(s)	553
FauI	CCCGC	1 cut(s)	77
Fnu4HI	GCNGC	3 cut(s)	258, 423, 630
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	2 cut(s)	471, 499
Fsp4HI	GCNGC	3 cut(s)	258, 423, 630
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	3 cut(s)	258, 423, 630
GsuI	CTGGAG	1 cut(s)	194
HapII	CCGG	3 cut(s)	53, 73, 317
Hin1II	CATG	1 cut(s)	557
HindIII	AAGCTT	1 cut(s)	91
HinfI	GANTC	2 cut(s)	205, 380
HpaII	CCGG	3 cut(s)	53, 73, 317
HphI	GGTGA	1 cut(s)	56
Hpy188I	TCNGA	7 cut(s)	41, 268, 276, 297, 360, 376, 730
Hpy188III	TCNNGA	4 cut(s)	211, 329, 485, 554
HpyCH4III	ACNGT	2 cut(s)	396, 669
HpyCH4V	TGCA	9 cut(s)	176, 233, 260, 290, 425, 443, 479, 520, 694
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	3 cut(s)	267, 491, 729
Hsp92II	CATG	1 cut(s)	557
Kzo9I	GATC	6 cut(s)	4, 226, 331, 487, 541, 711
LmnI	GCTCC	2 cut(s)	169, 451
Lsp1109I	GCAGC	3 cut(s)	244, 409, 616
LweI	GCATC	2 cut(s)	244, 734
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	4 cut(s)	44, 80, 381, 433
MalI	GATC	6 cut(s)	6, 228, 333, 489, 543, 713
MboI	GATC	6 cut(s)	4, 226, 331, 487, 541, 711
MboII	GAAGA	5 cut(s)	125, 167, 347, 569, 632
MflI	RGATCY	2 cut(s)	4, 487
MhlI	GDGCHC	3 cut(s)	70, 471, 499
MluCI	AATT	6 cut(s)	349, 530, 549, 560, 577, 637
MlyI	GAGTC	2 cut(s)	214, 389
MmeI	TCCRAC	2 cut(s)	378, 671
MroXI	GAANNNNTTC	1 cut(s)	611
MseI	TTAA	2 cut(s)	141, 671
MspI	CCGG	3 cut(s)	53, 73, 317
MspR9I	CCNGG	4 cut(s)	54, 168, 318, 617
Mva1269I	GAATGC	2 cut(s)	283, 425
MvaI	CCWGG	2 cut(s)	168, 617
MwoI	GCNNNNNNNGC	1 cut(s)	69
NciI	CCSGG	2 cut(s)	54, 318
NdeII	GATC	6 cut(s)	4, 226, 331, 487, 541, 711
NlaIII	CATG	1 cut(s)	557
NlaIV	GGNNCC	2 cut(s)	6, 67
NmuCI	GTSAC	2 cut(s)	44, 381
PagI	TCATGA	1 cut(s)	553
PctI	GAATGC	2 cut(s)	283, 425
PdmI	GAANNNNTTC	1 cut(s)	611
PfoI	TCCNGGA	2 cut(s)	52, 615
PkrI	GCNGC	3 cut(s)	259, 424, 631
PleI	GAGTC	2 cut(s)	213, 388
PpsI	GAGTC	2 cut(s)	213, 388
PsiI	TTATAA	1 cut(s)	311
Psp124BI	GAGCTC	2 cut(s)	471, 499
Psp6I	CCWGG	2 cut(s)	166, 615
PspGI	CCWGG	2 cut(s)	166, 615
PspN4I	GGNNCC	2 cut(s)	6, 67
PstI	CTGCAG	1 cut(s)	481
PstNI	CAGNNNCTG	1 cut(s)	364
PsuI	RGATCY	2 cut(s)	4, 487
SacI	GAGCTC	2 cut(s)	471, 499
SaqAI	TTAA	2 cut(s)	141, 671
SatI	GCNGC	3 cut(s)	258, 423, 630
Sau3AI	GATC	6 cut(s)	4, 226, 331, 487, 541, 711
SchI	GAGTC	2 cut(s)	214, 389
ScrFI	CCNGG	4 cut(s)	54, 168, 318, 617
SduI	GDGCHC	3 cut(s)	70, 471, 499
SfaNI	GCATC	2 cut(s)	244, 734
SfcI	CTRYAG	1 cut(s)	477
SmlI	CTYRAG	2 cut(s)	470, 503
SmoI	CTYRAG	2 cut(s)	470, 503
Sse9I	AATT	6 cut(s)	349, 530, 549, 560, 577, 637
SsiI	CCGC	2 cut(s)	63, 70
SspMI	CTAG	1 cut(s)	60
SstI	GAGCTC	2 cut(s)	471, 499
StyD4I	CCNGG	4 cut(s)	52, 166, 316, 615
TaaI	ACNGT	2 cut(s)	396, 669
TaqI	TCGA	2 cut(s)	21, 153
TasI	AATT	6 cut(s)	349, 530, 549, 560, 577, 637
Tru1I	TTAA	2 cut(s)	141, 671
Tru9I	TTAA	2 cut(s)	141, 671
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	2 cut(s)	44, 381
TseI	GCWGC	3 cut(s)	257, 422, 629
Tsp45I	GTSAC	2 cut(s)	44, 381
TspDTI	ATGAA	5 cut(s)	315, 418, 542, 570, 735
TspRI	CASTG	1 cut(s)	390
XagI	CCTNNNNNAGG	1 cut(s)	695
XapI	RAATTY	2 cut(s)	560, 577
XmnI	GAANNNNTTC	1 cut(s)	611
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.