Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006769

Physical Location & Seq

Genomic Coordinates Reverse (-)

540740 .. 542636

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0007000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGATGAGAGAGGCAAGAAAGTAGTCGTCATCCCGGAAGTAGTACTGAATTCCGGGAAGAAGATGCCGGTGCTAGGCTTTGGCACCGGAGTTTTCGGGAGTCCTCCACCGGCTCAAACCCTGGCTCGTATTCTCCTTGACGCCATTGAGCTTGGCTACCGTCACTTTGACACTGCTGCTCTCTATGGAACCGAAGAAGCCGTAGGTCTCGCCATCACCCAAGCCCTAGACCGAGGTCTCATCAAGACTCGCGATGAGTTGTTCATCACTTCCAAGCTCTGGTGCACTGACGCCCATCATGATCTTGTTCTCCCAGCTCTCAAATTGACACTACAGAGGCTGGGATTGGAGTATGTGGATCTATACCTGATTCATTGGCCGGTGAGGATGAAACAAGGAACTCCGGCAGTACCAAATTCGAAAGAGGACTTGCTTCCCTTTGATATAATGGGGACATGGGAGGCGATGGAAGAGTGCTACAGGCTGGGATTGGCCAAGTCTATTGGCGTCAGCAACTTTGGTACCAAAAAGCTCTCTCAAATCCTTGACAACGGGACCATCCCTCCAGCGGTCAATCAGGTGGAAATGAACCCGTCCTGGCAGCAAGGAAATCTGCGAGACTTCTGTAAAGGGAAAGGAATTCATGTGACTGCATGGTCTCCCTTGGGGTTTTATGGAGCTACCAGCTGGGCTCCAAAACCCTGGATAGACTATGCCATCATTAAGGACATCGCTGCTGCAAAGGGGAAGAGTGTACCACAGGTTATACTGAGATCCATCATCCAACAAGGAGAGGTGAGTGCAATTTCGAGGAGTTTCAACAAGGAGAGGATGAAGGATAATGCTCAAATATTTGATTGGGAGCTAAGTGAGGATGAAATGAACAAGATCAAGGAAATTCCCCAGCGCAGGCTGGGTGTAGGAGACTTCTTCGTTTCCGACGACAGTCAATACAAATCCGTCGACGACCTTTGGGATGGCAACCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0001510 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009506 GO:0009888 GO:0009987 GO:0010073 GO:0010468 GO:0016070 GO:0016071 GO:0016556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043484 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048507 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0071704 GO:0080009 GO:0080090 GO:0090304 GO:1901360 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Wtap

Protein Analysis

329

Amino Acids

36.67

Weight (kDa)

5.82

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	25 - 300	1.8e-48	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54170
fragaria_vesca	FvH4_5g05840 FvH4_5g05840 FvH4_5g05840 FvH4_5g05840
malus_domestica	MD06G1169900.v1.1
prunus_persica	Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1
pyrus_communis	pycom06g15130
rosa_chinensis	RchiOBHm_Chr3g0448991 RchiOBHm_Chr7g0192981
rosa_laevigata	RLG00000004305 RLG00000014553
rosa_multiflora	Rmu_sc0002040.1_g000066 Rmu_sc0027188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262480
rosa_rugosa	Rorug05G0014700 Rorug07G0007000 Rorug07G0007100 Rorug07G0007200
rosa_samantha	Rh7AG132000 Rh7BG132800 Rh7CG136000 Rh7DG133900
rosa_wichuraiana	Rw7G011260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	655
Acc65I	GGTACC	1 cut(s)	521
AccB1I	GGYRCC	2 cut(s)	83, 521
AccB7I	CCANNNNNTGG	1 cut(s)	279
AccI	GTMKAC	1 cut(s)	963
AccII	CGCG	1 cut(s)	252
AciI	CCGC	1 cut(s)	569
AclWI	GGATC	2 cut(s)	366, 768
AcoI	YGGCCR	2 cut(s)	377, 492
AcsI	RAATTY	4 cut(s)	49, 415, 639, 897
AcyI	GRCGYC	3 cut(s)	141, 291, 507
AfaI	GTAC	4 cut(s)	45, 411, 523, 756
AfiI	CCNNNNNNNGG	4 cut(s)	74, 279, 568, 909
AgsI	TTSAA	1 cut(s)	820
AjnI	CCWGG	3 cut(s)	120, 596, 701
AluBI	AGCT	7 cut(s)	151, 277, 317, 532, 680, 687, 865
AluI	AGCT	7 cut(s)	151, 277, 317, 532, 680, 687, 865
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	5 cut(s)	212, 242, 612, 663, 918
Alw44I	GTGCAC	1 cut(s)	283
AlwI	GGATC	2 cut(s)	366, 768
AlwNI	CAGNNNCTG	1 cut(s)	340
AoxI	GGCC	2 cut(s)	377, 492
ApaLI	GTGCAC	1 cut(s)	283
ApeKI	GCWGC	4 cut(s)	176, 601, 734, 737
ApoI	RAATTY	4 cut(s)	49, 415, 639, 897
Asp718I	GGTACC	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	909
AspS9I	GGNCC	1 cut(s)	555
AsuC2I	CCSGG	2 cut(s)	35, 55
AsuHPI	GGTGA	3 cut(s)	208, 394, 808
AsuII	TTCGAA	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	555
BaeGI	GKGCMC	1 cut(s)	287
BaeI	ACNNNNGTAYC	2 cut(s)	505, 538
BalI	TGGCCA	1 cut(s)	494
BanI	GGYRCC	2 cut(s)	83, 521
BanII	GRGCYC	1 cut(s)	694
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	4 cut(s)	163, 613, 721, 724
BccI	CCATC	7 cut(s)	221, 303, 460, 566, 725, 785, 971
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	3 cut(s)	122, 598, 703
BcnI	CCSGG	2 cut(s)	35, 55
BcoDI	GTCTC	5 cut(s)	212, 242, 612, 663, 918
BfaI	CTAG	2 cut(s)	74, 227
BfmI	CTRYAG	2 cut(s)	332, 478
BisI	GCNGC	4 cut(s)	177, 602, 735, 738
BlsI	GCNGC	4 cut(s)	178, 603, 736, 739
BmcAI	AGTACT	1 cut(s)	45
Bme1390I	CCNGG	5 cut(s)	35, 55, 122, 598, 703
Bme18I	GGWCC	1 cut(s)	555
BmgT120I	GGNCC	1 cut(s)	555
BmiI	GGNNCC	5 cut(s)	85, 190, 523, 556, 693
BmrFI	CCNGG	5 cut(s)	35, 55, 122, 598, 703
BmsI	GCATC	1 cut(s)	54
BoxI	GACNNNNGTC	2 cut(s)	234, 945
BpmI	CTGGAG	1 cut(s)	549
Bpu14I	TTCGAA	1 cut(s)	419
BpuMI	CCSGG	2 cut(s)	35, 55
BsaHI	GRCGYC	3 cut(s)	141, 291, 507
BsaI	GGTCTC	3 cut(s)	212, 242, 663
BsaJI	CCNNGG	4 cut(s)	120, 232, 663, 701
BsaWI	WCCGGW	1 cut(s)	86
BsaXI	ACNNNNNCTCC	2 cut(s)	547, 577
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 279, 568, 909
Bse118I	RCCGGY	3 cut(s)	67, 109, 379
BseBI	CCWGG	3 cut(s)	122, 598, 703
BseDI	CCNNGG	4 cut(s)	120, 232, 663, 701
BseGI	GGATG	8 cut(s)	10, 30, 393, 558, 780, 837, 880, 982
BseLI	CCNNNNNNNGG	4 cut(s)	74, 279, 568, 909
BseMII	CTCAG	1 cut(s)	761
BseRI	GAGGAG	1 cut(s)	826
BseSI	GKGCMC	1 cut(s)	287
BseXI	GCAGC	4 cut(s)	163, 613, 721, 724
BseYI	CCCAGC	6 cut(s)	313, 340, 484, 687, 903, 913
Bsh1236I	CGCG	1 cut(s)	252
BshFI	GGCC	2 cut(s)	379, 494
BshNI	GGYRCC	2 cut(s)	83, 521
BsiHKAI	GWGCWC	1 cut(s)	287
BsiSI	CCGG	7 cut(s)	35, 54, 68, 87, 110, 380, 404
BslFI	GGGAC	2 cut(s)	466, 568
BslI	CCNNNNNNNGG	4 cut(s)	74, 279, 568, 909
BsmAI	GTCTC	5 cut(s)	212, 242, 612, 663, 918
BsmFI	GGGAC	2 cut(s)	466, 568
BsnI	GGCC	2 cut(s)	379, 494
Bso31I	GGTCTC	3 cut(s)	212, 242, 663
Bsp119I	TTCGAA	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	287, 694
Bsp143I	GATC	4 cut(s)	301, 358, 773, 888
Bsp68I	TCGCGA	1 cut(s)	252
BspACI	CCGC	1 cut(s)	569
BspANI	GGCC	2 cut(s)	379, 494
BspCNI	CTCAG	1 cut(s)	762
BspFNI	CGCG	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	5 cut(s)	85, 190, 523, 556, 693
BspPI	GGATC	2 cut(s)	366, 768
BspT104I	TTCGAA	1 cut(s)	419
BspT107I	GGYRCC	2 cut(s)	83, 521
BspTNI	GGTCTC	3 cut(s)	212, 242, 663
BsrFI	RCCGGY	3 cut(s)	67, 109, 379
BssAI	RCCGGY	3 cut(s)	67, 109, 379
BssECI	CCNNGG	4 cut(s)	120, 232, 663, 701
BssMI	GATC	4 cut(s)	301, 358, 773, 888
BssNI	GRCGYC	3 cut(s)	141, 291, 507
BssT1I	CCWWGG	1 cut(s)	663
Bst2UI	CCWGG	3 cut(s)	122, 598, 703
Bst4CI	ACNGT	2 cut(s)	161, 947
Bst6I	CTCTTC	2 cut(s)	465, 743
BstACI	GRCGYC	3 cut(s)	141, 291, 507
BstBI	TTCGAA	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	911
BstDEI	CTNAG	2 cut(s)	770, 866
BstF5I	GGATG	8 cut(s)	10, 30, 393, 558, 780, 837, 880, 982
BstFNI	CGCG	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	909
BstKTI	GATC	4 cut(s)	304, 361, 776, 891
BstMAI	GTCTC	5 cut(s)	212, 242, 612, 663, 918
BstMBI	GATC	4 cut(s)	301, 358, 773, 888
BstNI	CCWGG	3 cut(s)	122, 598, 703
BstPAI	GACNNNNGTC	2 cut(s)	234, 945
BstSCI	CCNGG	5 cut(s)	33, 53, 120, 596, 701
BstSFI	CTRYAG	2 cut(s)	332, 478
BstSLI	GKGCMC	1 cut(s)	287
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	4 cut(s)	163, 613, 721, 724
BstX2I	RGATCY	2 cut(s)	358, 773
BstXI	CCANNNNNNTGG	1 cut(s)	702
BstYI	RGATCY	2 cut(s)	358, 773
BsuRI	GGCC	2 cut(s)	379, 494
BtgZI	GCGATG	3 cut(s)	267, 479, 715
BtsCI	GGATG	8 cut(s)	10, 30, 393, 558, 780, 837, 880, 982
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	171, 285
BtuMI	TCGCGA	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	911
CaiI	CAGNNNCTG	1 cut(s)	340
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	1 cut(s)	909
Cfr10I	RCCGGY	3 cut(s)	67, 109, 379
Cfr13I	GGNCC	1 cut(s)	555
CseI	GACGC	3 cut(s)	149, 299, 496
Csp6I	GTAC	4 cut(s)	44, 410, 522, 755
CviAII	CATG	4 cut(s)	299, 456, 644, 654
CviQI	GTAC	4 cut(s)	44, 410, 522, 755
DdeI	CTNAG	2 cut(s)	770, 866
DpnI	GATC	4 cut(s)	303, 360, 775, 890
DpnII	GATC	4 cut(s)	301, 358, 773, 888
DrdI	GACNNNNNNGTC	1 cut(s)	655
DseDI	GACNNNNNNGTC	1 cut(s)	655
EaeI	YGGCCR	2 cut(s)	377, 492
Eam1104I	CTCTTC	2 cut(s)	465, 743
EarI	CTCTTC	2 cut(s)	465, 743
Eco130I	CCWWGG	1 cut(s)	663
Eco24I	GRGCYC	1 cut(s)	694
Eco31I	GGTCTC	3 cut(s)	212, 242, 663
Eco47I	GGWCC	1 cut(s)	555
EcoRI	GAATTC	2 cut(s)	49, 639
EcoRII	CCWGG	3 cut(s)	120, 596, 701
EcoT14I	CCWWGG	1 cut(s)	663
EcoT38I	GRGCYC	1 cut(s)	694
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	4 cut(s)	302, 459, 647, 657
FaqI	GGGAC	2 cut(s)	466, 568
FatI	CATG	4 cut(s)	298, 455, 643, 653
FblI	GTMKAC	1 cut(s)	963
Fnu4HI	GCNGC	4 cut(s)	177, 602, 735, 738
FokI	GGATG	7 cut(s)	17, 17, 400, 545, 767, 844, 887
FriOI	GRGCYC	1 cut(s)	694
Fsp4HI	GCNGC	4 cut(s)	177, 602, 735, 738
FspBI	CTAG	2 cut(s)	74, 227
GlaI	GCGC	1 cut(s)	908
GluI	GCNGC	4 cut(s)	177, 602, 735, 738
GsaI	CCCAGC	6 cut(s)	317, 344, 488, 691, 907, 917
GsuI	CTGGAG	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	379, 494
HapII	CCGG	7 cut(s)	35, 54, 68, 87, 110, 380, 404
HgaI	GACGC	3 cut(s)	149, 299, 496
HhaI	GCGC	1 cut(s)	909
Hin1I	GRCGYC	3 cut(s)	141, 291, 507
Hin1II	CATG	4 cut(s)	302, 459, 647, 657
Hin6I	GCGC	1 cut(s)	907
HinP1I	GCGC	1 cut(s)	907
HincII	GTYRAC	1 cut(s)	964
HindII	GTYRAC	1 cut(s)	964
HinfI	GANTC	3 cut(s)	100, 247, 370
HpaII	CCGG	7 cut(s)	35, 54, 68, 87, 110, 380, 404
HphI	GGTGA	3 cut(s)	208, 394, 808
Hpy166II	GTNNAC	3 cut(s)	285, 755, 964
Hpy188I	TCNGA	1 cut(s)	940
Hpy188III	TCNNGA	4 cut(s)	97, 244, 251, 299
Hpy8I	GTNNAC	3 cut(s)	285, 755, 964
Hpy99I	CGWCG	3 cut(s)	944, 965, 968
HpyAV	CCTTC	1 cut(s)	829
HpyCH4III	ACNGT	2 cut(s)	161, 947
HpyCH4V	TGCA	4 cut(s)	285, 653, 740, 803
HpyF3I	CTNAG	2 cut(s)	770, 866
Hsp92I	GRCGYC	3 cut(s)	141, 291, 507
Hsp92II	CATG	4 cut(s)	302, 459, 647, 657
HspAI	GCGC	1 cut(s)	907
KpnI	GGTACC	1 cut(s)	525
Kzo9I	GATC	4 cut(s)	301, 358, 773, 888
LmnI	GCTCC	3 cut(s)	677, 697, 862
Lsp1109I	GCAGC	4 cut(s)	163, 613, 721, 724
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	2 cut(s)	74, 227
MaeIII	GTNAC	2 cut(s)	161, 646
MalI	GATC	4 cut(s)	303, 360, 775, 890
MboI	GATC	4 cut(s)	301, 358, 773, 888
MboII	GAAGA	6 cut(s)	70, 73, 206, 482, 760, 922
MflI	RGATCY	2 cut(s)	358, 773
MhlI	GDGCHC	2 cut(s)	287, 694
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	6 cut(s)	49, 323, 415, 639, 804, 897
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	2 cut(s)	109, 241
MmeI	TCCRAC	2 cut(s)	808, 963
Mox20I	TGGCCA	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	1 cut(s)	723
Msp20I	TGGCCA	1 cut(s)	494
MspA1I	CMGCKG	2 cut(s)	569, 687
MspI	CCGG	7 cut(s)	35, 54, 68, 87, 110, 380, 404
MspR9I	CCNGG	5 cut(s)	35, 55, 122, 598, 703
MvaI	CCWGG	3 cut(s)	122, 598, 703
MvnI	CGCG	1 cut(s)	252
NciI	CCSGG	2 cut(s)	35, 55
NdeII	GATC	4 cut(s)	301, 358, 773, 888
NlaIII	CATG	4 cut(s)	302, 459, 647, 657
NlaIV	GGNNCC	5 cut(s)	85, 190, 523, 556, 693
NmuCI	GTSAC	2 cut(s)	161, 646
NruI	TCGCGA	1 cut(s)	252
NspV	TTCGAA	1 cut(s)	419
PagI	TCATGA	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	939
PfeI	GAWTC	1 cut(s)	370
PflMI	CCANNNNNTGG	1 cut(s)	279
PfoI	TCCNGGA	2 cut(s)	33, 53
PkrI	GCNGC	4 cut(s)	178, 603, 736, 739
PleI	GAGTC	2 cut(s)	108, 241
PpsI	GAGTC	2 cut(s)	108, 241
PshAI	GACNNNNGTC	2 cut(s)	234, 945
Psp6I	CCWGG	3 cut(s)	120, 596, 701
PspFI	CCCAGC	6 cut(s)	313, 340, 484, 687, 903, 913
PspGI	CCWGG	3 cut(s)	120, 596, 701
PspN4I	GGNNCC	5 cut(s)	85, 190, 523, 556, 693
PspPI	GGNCC	1 cut(s)	555
PstNI	CAGNNNCTG	1 cut(s)	340
PsuI	RGATCY	2 cut(s)	358, 773
PvuII	CAGCTG	1 cut(s)	687
RruI	TCGCGA	1 cut(s)	252
RsaI	GTAC	4 cut(s)	45, 411, 523, 756
RsaNI	GTAC	4 cut(s)	44, 410, 522, 755
SalI	GTCGAC	1 cut(s)	962
SaqAI	TTAA	1 cut(s)	723
SatI	GCNGC	4 cut(s)	177, 602, 735, 738
Sau3AI	GATC	4 cut(s)	301, 358, 773, 888
Sau96I	GGNCC	1 cut(s)	555
ScaI	AGTACT	1 cut(s)	45
SchI	GAGTC	2 cut(s)	109, 241
ScrFI	CCNGG	5 cut(s)	35, 55, 122, 598, 703
SduI	GDGCHC	2 cut(s)	287, 694
SfaNI	GCATC	1 cut(s)	54
SfcI	CTRYAG	2 cut(s)	332, 478
SfuI	TTCGAA	1 cut(s)	419
SgrDI	CGTCGACG	1 cut(s)	962
SinI	GGWCC	1 cut(s)	555
Sse9I	AATT	6 cut(s)	49, 323, 415, 639, 804, 897
SsiI	CCGC	1 cut(s)	569
SspI	AATATT	1 cut(s)	852
SspMI	CTAG	2 cut(s)	74, 227
StyD4I	CCNGG	5 cut(s)	33, 53, 120, 596, 701
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	2 cut(s)	161, 947
TaqI	TCGA	3 cut(s)	419, 809, 963
TaqII	GACCGA	1 cut(s)	246
TasI	AATT	6 cut(s)	49, 323, 415, 639, 804, 897
TatI	WGTACW	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	1 cut(s)	723
Tru9I	TTAA	1 cut(s)	723
TscAI	CASTG	2 cut(s)	178, 292
TseFI	GTSAC	2 cut(s)	161, 646
TseI	GCWGC	4 cut(s)	176, 601, 734, 737
Tsp45I	GTSAC	2 cut(s)	161, 646
TspDTI	ATGAA	8 cut(s)	253, 362, 404, 602, 632, 848, 891, 896
TspGWI	ACGGA	1 cut(s)	949
TspRI	CASTG	2 cut(s)	178, 292
Van91I	CCANNNNNTGG	1 cut(s)	279
VneI	GTGCAC	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	555
XapI	RAATTY	4 cut(s)	49, 415, 639, 897
XmiI	GTMKAC	1 cut(s)	963
XspI	CTAG	2 cut(s)	74, 227
ZrmI	AGTACT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.