Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006769

Physical Location & Seq

Genomic Coordinates Forward (+)

3444894 .. 3449417

Gene Structure 4524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGATCCCCACACTCGTCTCGATGACGATGATGATTTCGGAGGAGATTTTCCGGGGACTAGCGGTGCCCGCCGGTCAGGAAATAAGAGAAACTTTGGGGAGATTGACGACGAAGATGACTTGTTTGGCTCAAAGCAGGCTAAAGCAAAAATCGAGGAAACTGCTCCTGGTGTTGCAACAGGAATGATTTTGTCTCTTCGTGAGAGTCTCCAGACCTGTAAGGATGATCTTGCAAAATGTCAAATGGAACATGATGTTGCAAAATCTGAGGTTCAAAAATGGCATTCTGCATTTCAGAATGAACCCTTCATAAATCCAGGGTCTTCTCCTGATCCTACATTAGTCATCAATTACCTTCAGACCCTGAAAAACTCTGAGGAGTCACTGAAAGAACAGTTGGAGAAAGCAAAGAAAAAGGAAGCTGCATTCATAGTTACATTTGCAAAACGGGAGCAGGAGATTGCAGAGCTCAAGTCTGCAGTTCGGGATCTTAGAGCTCAACTCAAGCCACCATCATTGCAGGCAAGAAAATTACTGCTTGATCCAGCAATTCATGAAGAGTTTACTCGTCTAAAGAATTTGGTTGAGGAGAAAGAAAAAAAATTGAAGGAGTTCCAGGAAAATGCCGCTGCCAATAATTTTACTCCAACAAGCAAGATGGGGAAACAGTTAATGGCTAAATGTAAGACTCTGCAAGAGGAAAATGAGGAGATTGGCATGGAAGCATCTGAGGGAAAGATGCATGAATTATCCATGAAACTTGCTTTGCAAAAGAACCAAAATGCAGAACTTAGAAGTCAATTTGAAGCATTGTACAAGCATATGGAGGGCCTCACAAATGATGTGGAAAGATCAAATGAAATGGTGGTCATCATGCAAGAGAAGCTTGAACATAAGGATAGTGAAATCAAAAGATTAAAGGACGAGCTAGAGCAGAAGAGCATAATAGTGGAGGAGAAAATTGATCCAGCTTCTGATAACGGAAAATCCAGCGATGAAGTGATGGTATCTGGGGAAGCCAATGGCTCAGATAATAAAGATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0001510 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009506 GO:0009888 GO:0009987 GO:0010073 GO:0010468 GO:0016070 GO:0016071 GO:0016556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043484 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048507 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0071704 GO:0080009 GO:0080090 GO:0090304 GO:1901360 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Wtap

Protein Analysis

349

Amino Acids

39.24

Weight (kDa)

5.07

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Wtap	PF17098	135 - 289	1.3e-50	WTAP/Mum2p family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54170
fragaria_vesca	FvH4_5g05840 FvH4_5g05840 FvH4_5g05840 FvH4_5g05840
malus_domestica	MD06G1169900.v1.1
prunus_persica	Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1
pyrus_communis	pycom06g15130
rosa_chinensis	RchiOBHm_Chr3g0448991 RchiOBHm_Chr7g0192981
rosa_laevigata	RLG00000004305 RLG00000014553
rosa_multiflora	Rmu_sc0002040.1_g000066 Rmu_sc0027188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262480
rosa_rugosa	Rorug05G0014700 Rorug07G0007000 Rorug07G0007100 Rorug07G0007200
rosa_samantha	Rh7AG132000 Rh7BG132800 Rh7CG136000 Rh7DG133900
rosa_wichuraiana	Rw7G011260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AciI	CCGC	3 cut(s)	63, 70, 627
AclWI	GGATC	5 cut(s)	12, 326, 495, 536, 959
AcsI	RAATTY	1 cut(s)	577
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	1 cut(s)	815
AgsI	TTSAA	4 cut(s)	275, 607, 806, 890
AjnI	CCWGG	3 cut(s)	166, 316, 615
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	6 cut(s)	422, 469, 497, 886, 928, 971
AluI	AGCT	6 cut(s)	422, 469, 497, 886, 928, 971
Alw21I	GWGCWC	2 cut(s)	471, 499
Alw26I	GTCTC	3 cut(s)	23, 198, 212
AlwI	GGATC	5 cut(s)	12, 326, 495, 536, 959
AlwNI	CAGNNNCTG	2 cut(s)	364, 974
AoxI	GGCC	1 cut(s)	829
ApeKI	GCWGC	2 cut(s)	422, 629
ApoI	RAATTY	1 cut(s)	577
Asp700I	GAANNNNTTC	1 cut(s)	611
AspS9I	GGNCC	1 cut(s)	829
AsuC2I	CCSGG	1 cut(s)	54
BaeGI	GKGCMC	1 cut(s)	70
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	2 cut(s)	471, 499
BbsI	GAAGAC	1 cut(s)	315
Bbv12I	GWGCWC	2 cut(s)	471, 499
BbvI	GCAGC	2 cut(s)	409, 616
BccI	CCATC	3 cut(s)	520, 652, 997
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	3 cut(s)	168, 318, 617
BcnI	CCSGG	1 cut(s)	54
BcoDI	GTCTC	3 cut(s)	23, 198, 212
BfaI	CTAG	2 cut(s)	60, 929
BfmI	CTRYAG	1 cut(s)	477
BisI	GCNGC	3 cut(s)	423, 627, 630
BlsI	GCNGC	3 cut(s)	424, 628, 631
Bme1390I	CCNGG	4 cut(s)	54, 168, 318, 617
BmgT120I	GGNCC	1 cut(s)	829
BmiI	GGNNCC	2 cut(s)	6, 67
BmrFI	CCNGG	4 cut(s)	54, 168, 318, 617
BmsI	GCATC	2 cut(s)	729, 734
BpiI	GAAGAC	1 cut(s)	315
BplI	GAGNNNNNCTC	2 cut(s)	486, 518
BpmI	CTGGAG	1 cut(s)	194
BpuEI	CTTGAG	2 cut(s)	455, 488
BpuMI	CCSGG	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	53, 317
Bse118I	RCCGGY	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	515
BseBI	CCWGG	3 cut(s)	168, 318, 617
BseDI	CCNNGG	2 cut(s)	53, 317
BseGI	GGATG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	515
BseMII	CTCAG	4 cut(s)	258, 366, 720, 1041
BseRI	GAGGAG	5 cut(s)	57, 392, 602, 722, 968
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	409, 616
BshFI	GGCC	1 cut(s)	831
BshNI	GGYRCC	1 cut(s)	65
BsiHKAI	GWGCWC	2 cut(s)	471, 499
BsiSI	CCGG	2 cut(s)	53, 73
BslFI	GGGAC	1 cut(s)	70
BsmAI	GTCTC	3 cut(s)	23, 198, 212
BsmBI	CGTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	70
BsmI	GAATGC	2 cut(s)	283, 425
BsnI	GGCC	1 cut(s)	831
Bsp1286I	GDGCHC	3 cut(s)	70, 471, 499
Bsp1407I	TGTACA	1 cut(s)	813
Bsp143I	GATC	7 cut(s)	4, 226, 331, 487, 541, 851, 964
BspACI	CCGC	3 cut(s)	63, 70, 627
BspANI	GGCC	1 cut(s)	831
BspCNI	CTCAG	4 cut(s)	259, 367, 721, 1040
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	2 cut(s)	6, 67
BspMAI	CTGCAG	1 cut(s)	481
BspPI	GGATC	5 cut(s)	12, 326, 495, 536, 959
BspQI	GCTCTTC	1 cut(s)	932
BspT107I	GGYRCC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	515
BsrFI	RCCGGY	1 cut(s)	72
BsrGI	TGTACA	1 cut(s)	813
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	53, 317
BssMI	GATC	7 cut(s)	4, 226, 331, 487, 541, 851, 964
Bst2UI	CCWGG	3 cut(s)	168, 318, 617
Bst4CI	ACNGT	2 cut(s)	396, 669
Bst6I	CTCTTC	3 cut(s)	201, 552, 932
BstAUI	TGTACA	1 cut(s)	813
BstC8I	GCNNGC	3 cut(s)	70, 138, 522
BstDEI	CTNAG	6 cut(s)	267, 375, 491, 729, 791, 1027
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	7 cut(s)	7, 229, 334, 490, 544, 854, 967
BstMAI	GTCTC	3 cut(s)	23, 198, 212
BstMBI	GATC	7 cut(s)	4, 226, 331, 487, 541, 851, 964
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 883
BstNI	CCWGG	3 cut(s)	168, 318, 617
BstSCI	CCNGG	4 cut(s)	52, 166, 316, 615
BstSFI	CTRYAG	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	409, 616
BstV2I	GAAGAC	1 cut(s)	315
BstX2I	RGATCY	2 cut(s)	4, 487
BstYI	RGATCY	2 cut(s)	4, 487
BsuRI	GGCC	1 cut(s)	831
BtgZI	GCGATG	1 cut(s)	1008
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	383
Cac8I	GCNNGC	3 cut(s)	70, 138, 522
CaiI	CAGNNNCTG	2 cut(s)	364, 974
CciI	TCATGA	1 cut(s)	553
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	829
Csp6I	GTAC	1 cut(s)	814
CspCI	CAANNNNNGTGG	4 cut(s)	498, 533, 825, 860
CviAII	CATG	6 cut(s)	251, 554, 718, 743, 754, 874
CviQI	GTAC	1 cut(s)	814
DdeI	CTNAG	6 cut(s)	267, 375, 491, 729, 791, 1027
DpnI	GATC	7 cut(s)	6, 228, 333, 489, 543, 853, 966
DpnII	GATC	7 cut(s)	4, 226, 331, 487, 541, 851, 964
Eam1104I	CTCTTC	3 cut(s)	201, 552, 932
EarI	CTCTTC	3 cut(s)	201, 552, 932
Ecl136II	GAGCTC	2 cut(s)	469, 497
Eco24I	GRGCYC	2 cut(s)	471, 499
Eco53kI	GAGCTC	2 cut(s)	469, 497
Eco57I	CTGAAG	1 cut(s)	341
EcoICRI	GAGCTC	2 cut(s)	469, 497
EcoO109I	RGGNCCY	1 cut(s)	829
EcoRII	CCWGG	3 cut(s)	166, 316, 615
EcoT22I	ATGCAT	1 cut(s)	744
EcoT38I	GRGCYC	2 cut(s)	471, 499
Esp3I	CGTCTC	1 cut(s)	23
FaeI	CATG	6 cut(s)	254, 557, 721, 746, 757, 877
FalI	AAGNNNNNCTT	4 cut(s)	77, 109, 870, 902
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	6 cut(s)	250, 553, 717, 742, 753, 873
FauI	CCCGC	1 cut(s)	77
FauNDI	CATATG	1 cut(s)	822
Fnu4HI	GCNGC	3 cut(s)	423, 627, 630
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	2 cut(s)	471, 499
Fsp4HI	GCNGC	3 cut(s)	423, 627, 630
FspBI	CTAG	2 cut(s)	60, 929
GluI	GCNGC	3 cut(s)	423, 627, 630
GsuI	CTGGAG	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	831
HapII	CCGG	2 cut(s)	53, 73
Hin1II	CATG	6 cut(s)	254, 557, 721, 746, 757, 877
HindIII	AAGCTT	1 cut(s)	884
HinfI	GANTC	3 cut(s)	205, 380, 688
HpaII	CCGG	2 cut(s)	53, 73
Hpy166II	GTNNAC	1 cut(s)	564
Hpy188I	TCNGA	8 cut(s)	41, 268, 297, 360, 376, 730, 976, 1030
Hpy188III	TCNNGA	7 cut(s)	20, 78, 200, 211, 329, 485, 554
Hpy8I	GTNNAC	1 cut(s)	564
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	3 cut(s)	316, 365, 601
HpyCH4III	ACNGT	2 cut(s)	396, 669
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 883
HpyF3I	CTNAG	6 cut(s)	267, 375, 491, 729, 791, 1027
Hsp92II	CATG	6 cut(s)	254, 557, 721, 746, 757, 877
Kzo9I	GATC	7 cut(s)	4, 226, 331, 487, 541, 851, 964
LguI	GCTCTTC	1 cut(s)	932
LmnI	GCTCC	2 cut(s)	169, 451
Lsp1109I	GCAGC	2 cut(s)	409, 616
LweI	GCATC	2 cut(s)	729, 734
MaeI	CTAG	2 cut(s)	60, 929
MaeIII	GTNAC	2 cut(s)	381, 433
MalI	GATC	7 cut(s)	6, 228, 333, 489, 543, 853, 966
MboI	GATC	7 cut(s)	4, 226, 331, 487, 541, 851, 964
MboII	GAAGA	5 cut(s)	125, 188, 315, 569, 949
MflI	RGATCY	2 cut(s)	4, 487
MhlI	GDGCHC	3 cut(s)	70, 471, 499
MluCI	AATT	9 cut(s)	349, 530, 549, 577, 602, 637, 746, 800, 960
MlyI	GAGTC	3 cut(s)	214, 389, 682
MmeI	TCCRAC	2 cut(s)	378, 671
Mph1103I	ATGCAT	1 cut(s)	744
MroXI	GAANNNNTTC	1 cut(s)	611
MseI	TTAA	2 cut(s)	671, 917
MslI	CAYNNNNRTG	1 cut(s)	947
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	2 cut(s)	53, 73
MspR9I	CCNGG	4 cut(s)	54, 168, 318, 617
Mva1269I	GAATGC	2 cut(s)	283, 425
MvaI	CCWGG	3 cut(s)	168, 318, 617
MwoI	GCNNNNNNNGC	2 cut(s)	69, 883
NciI	CCSGG	1 cut(s)	54
NdeI	CATATG	1 cut(s)	822
NdeII	GATC	7 cut(s)	4, 226, 331, 487, 541, 851, 964
NlaIII	CATG	6 cut(s)	254, 557, 721, 746, 757, 877
NlaIV	GGNNCC	2 cut(s)	6, 67
NmuCI	GTSAC	1 cut(s)	381
NsiI	ATGCAT	1 cut(s)	744
PagI	TCATGA	1 cut(s)	553
PciSI	GCTCTTC	1 cut(s)	932
PctI	GAATGC	2 cut(s)	283, 425
PdmI	GAANNNNTTC	1 cut(s)	611
PfoI	TCCNGGA	1 cut(s)	615
PkrI	GCNGC	3 cut(s)	424, 628, 631
PleI	GAGTC	3 cut(s)	213, 388, 682
PpsI	GAGTC	3 cut(s)	213, 388, 682
Psp124BI	GAGCTC	2 cut(s)	471, 499
Psp6I	CCWGG	3 cut(s)	166, 316, 615
PspGI	CCWGG	3 cut(s)	166, 316, 615
PspN4I	GGNNCC	2 cut(s)	6, 67
PspPI	GGNCC	1 cut(s)	829
PstI	CTGCAG	1 cut(s)	481
PstNI	CAGNNNCTG	2 cut(s)	364, 974
PsuI	RGATCY	2 cut(s)	4, 487
RsaI	GTAC	1 cut(s)	815
RsaNI	GTAC	1 cut(s)	814
RseI	CAYNNNNRTG	1 cut(s)	947
SacI	GAGCTC	2 cut(s)	471, 499
SapI	GCTCTTC	1 cut(s)	932
SaqAI	TTAA	2 cut(s)	671, 917
SatI	GCNGC	3 cut(s)	423, 627, 630
Sau3AI	GATC	7 cut(s)	4, 226, 331, 487, 541, 851, 964
Sau96I	GGNCC	1 cut(s)	829
SchI	GAGTC	3 cut(s)	214, 389, 682
ScrFI	CCNGG	4 cut(s)	54, 168, 318, 617
SduI	GDGCHC	3 cut(s)	70, 471, 499
SetI	ASST	9 cut(s)	218, 273, 357, 424, 471, 499, 888, 930, 973
SfaNI	GCATC	2 cut(s)	729, 734
SfcI	CTRYAG	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	947
SmlI	CTYRAG	2 cut(s)	470, 503
SmoI	CTYRAG	2 cut(s)	470, 503
Sse9I	AATT	9 cut(s)	349, 530, 549, 577, 602, 637, 746, 800, 960
SsiI	CCGC	3 cut(s)	63, 70, 627
SspMI	CTAG	2 cut(s)	60, 929
SstI	GAGCTC	2 cut(s)	471, 499
StyD4I	CCNGG	4 cut(s)	52, 166, 316, 615
TaaI	ACNGT	2 cut(s)	396, 669
TaqI	TCGA	2 cut(s)	21, 153
TasI	AATT	9 cut(s)	349, 530, 549, 577, 602, 637, 746, 800, 960
TatI	WGTACW	1 cut(s)	813
TauI	GCSGC	1 cut(s)	629
Tru1I	TTAA	2 cut(s)	671, 917
Tru9I	TTAA	2 cut(s)	671, 917
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	381
TseI	GCWGC	2 cut(s)	422, 629
Tsp45I	GTSAC	1 cut(s)	381
TspDTI	ATGAA	9 cut(s)	298, 315, 418, 542, 570, 759, 770, 873, 1011
TspGWI	ACGGA	1 cut(s)	996
TspRI	CASTG	1 cut(s)	390
XapI	RAATTY	1 cut(s)	577
XmnI	GAANNNNTTC	1 cut(s)	611
XspI	CTAG	2 cut(s)	60, 929
Zsp2I	ATGCAT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.