Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006769

Physical Location & Seq

Genomic Coordinates Forward (+)

56496297 .. 56500946

Gene Structure 4650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00262480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGATCCCCACACTCGCCTCGATGACGATGACGATTTCGGAGGTGACTTTCCGGGAACTAGCGGTGCCCGCCGGTCAGGTAACAAGAGGAGCTTTGGGGAGATTGAGGACGAAGATGATTTCTTTGGCTCAAAGCAGGTTAAAGCAAAAGTCGAAGAAACTGCTCCTGGTGTTGCAACAGGAATGATTTTGTCTCTGCGTGAGAGTCTCCAGACCTGTAAGGATGATCTTGCAAAGTGCCAAATGGAATATGATGTTGCAAAATCTGAGGTTCAGAAGTGGCATTCTGCATTTCAGAATGAACCCTTTATAAATCCGGGGACTTCTCCTGATCCTACATTAGTCATCAATTATCTTCAGACCCTGAAAAACTCCGAGGAGTCACTGAAAGAACAGTTGGAGAAAGCAAAGAAAAAGGAAGCTGCATTCATAGTTACATTTGCAAAACGGGAGCAGGAGGTCGCAGAGCTCAAGTCTGCAGTTCGGGATCTTAGAGCTCAACTCAAGCCACCATCATTGCAGGCAAGAAAATTGTTGCTTGATCCAGCAATTCATGAAGAATTTACTCGTCTAAAGAATTTGGTTGAGGAGAAAGAAAAAAGATTGAAGCAGTTCCAGGAAGATGTCGCTGCCAATACTTTTACTCCAACAAGCAAGATGGGGAAACAGTTAATGGCTAAATGTAAGACCCTGCAAGAGGAAAATGAGGAGATCGGCAATGAAGCATCTGAGGGAAAGATGCATGAATTATCCTTGAAACTTGCTTTGCAAAAGAATCAAAATGCAGAACTTAGAAGTCAATTTGAAGCATTGCACATGCATATGGAGGGCCTCACTAATGATGTGGAAAGATCAAATGAAATGGTGGTCATCATGCAAGAGAAGCTTGAACAGAAGGATAGTGAAATCAAAAGATTAAAGGACGAGCTAGAGCAGAAGAGCGTAATGGTGGAGGAGAAAATTGATCCAGCTTCTGATAATGGAAAATTCAGCGATGAAGTGATGGTATCCGGGGAAGCCAATGGCTCAGCTGATAAAGATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0001510 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009506 GO:0009888 GO:0009987 GO:0010073 GO:0010468 GO:0016070 GO:0016071 GO:0016556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043484 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048507 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0071704 GO:0080009 GO:0080090 GO:0090304 GO:1901360 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Wtap

Protein Analysis

348

Amino Acids

39.3

Weight (kDa)

4.99

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Wtap	PF17098	135 - 289	2.4e-50	WTAP/Mum2p family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54170
fragaria_vesca	FvH4_5g05840 FvH4_5g05840 FvH4_5g05840 FvH4_5g05840
malus_domestica	MD06G1169900.v1.1
prunus_persica	Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1
pyrus_communis	pycom06g15130
rosa_chinensis	RchiOBHm_Chr3g0448991 RchiOBHm_Chr7g0192981
rosa_laevigata	RLG00000004305 RLG00000014553
rosa_multiflora	Rmu_sc0002040.1_g000066 Rmu_sc0027188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262480
rosa_rugosa	Rorug05G0014700 Rorug07G0007000 Rorug07G0007100 Rorug07G0007200
rosa_samantha	Rh7AG132000 Rh7BG132800 Rh7CG136000 Rh7DG133900
rosa_wichuraiana	Rw7G011260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	127
AccB1I	GGYRCC	1 cut(s)	65
AciI	CCGC	2 cut(s)	63, 70
AclWI	GGATC	5 cut(s)	12, 326, 495, 536, 959
AcsI	RAATTY	3 cut(s)	560, 577, 986
AcuI	CTGAAG	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	697
AgsI	TTSAA	4 cut(s)	607, 757, 806, 890
AjnI	CCWGG	2 cut(s)	166, 615
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	8 cut(s)	93, 422, 469, 497, 886, 928, 971, 1031
AluI	AGCT	8 cut(s)	93, 422, 469, 497, 886, 928, 971, 1031
Alw21I	GWGCWC	2 cut(s)	471, 499
Alw26I	GTCTC	2 cut(s)	198, 212
AlwI	GGATC	5 cut(s)	12, 326, 495, 536, 959
AlwNI	CAGNNNCTG	2 cut(s)	364, 974
AoxI	GGCC	1 cut(s)	829
ApeKI	GCWGC	2 cut(s)	422, 629
ApoI	RAATTY	3 cut(s)	560, 577, 986
Asp700I	GAANNNNTTC	1 cut(s)	611
AspS9I	GGNCC	1 cut(s)	829
AsuC2I	CCSGG	3 cut(s)	54, 318, 1012
AsuHPI	GGTGA	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	70
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	2 cut(s)	471, 499
Bbv12I	GWGCWC	2 cut(s)	471, 499
BbvI	GCAGC	2 cut(s)	409, 616
BccI	CCATC	3 cut(s)	520, 652, 997
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	2 cut(s)	168, 617
BciVI	GTATCC	1 cut(s)	1018
BcnI	CCSGG	3 cut(s)	54, 318, 1012
BcoDI	GTCTC	2 cut(s)	198, 212
BfaI	CTAG	2 cut(s)	60, 929
BfmI	CTRYAG	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	1018
BisI	GCNGC	2 cut(s)	423, 630
BlpI	GCTNAGC	1 cut(s)	1027
BlsI	GCNGC	2 cut(s)	424, 631
Bme1390I	CCNGG	5 cut(s)	54, 168, 318, 617, 1012
BmgT120I	GGNCC	1 cut(s)	829
BmiI	GGNNCC	2 cut(s)	6, 67
BmrFI	CCNGG	5 cut(s)	54, 168, 318, 617, 1012
BmsI	GCATC	2 cut(s)	729, 734
BplI	GAGNNNNNCTC	2 cut(s)	486, 518
BpmI	CTGGAG	1 cut(s)	194
Bpu1102I	GCTNAGC	1 cut(s)	1027
BpuEI	CTTGAG	2 cut(s)	455, 488
BpuMI	CCSGG	3 cut(s)	54, 318, 1012
BsaJI	CCNNGG	3 cut(s)	317, 375, 1011
BsaXI	ACNNNNNCTCC	2 cut(s)	628, 658
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse118I	RCCGGY	1 cut(s)	72
Bse3DI	GCAATG	3 cut(s)	515, 724, 809
BseBI	CCWGG	2 cut(s)	168, 617
BseDI	CCNNGG	3 cut(s)	317, 375, 1011
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMI	GCAATG	3 cut(s)	515, 724, 809
BseMII	CTCAG	3 cut(s)	258, 720, 1041
BseRI	GAGGAG	5 cut(s)	103, 392, 602, 722, 968
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	409, 616
BshFI	GGCC	1 cut(s)	831
BshNI	GGYRCC	1 cut(s)	65
BsiHKAI	GWGCWC	2 cut(s)	471, 499
BsiSI	CCGG	4 cut(s)	53, 73, 317, 1011
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmAI	GTCTC	2 cut(s)	198, 212
BsmFI	GGGAC	1 cut(s)	334
BsmI	GAATGC	2 cut(s)	283, 425
BsnI	GGCC	1 cut(s)	831
Bsp1286I	GDGCHC	3 cut(s)	70, 471, 499
Bsp143I	GATC	8 cut(s)	4, 226, 331, 487, 541, 711, 851, 964
Bsp1720I	GCTNAGC	1 cut(s)	1027
BspACI	CCGC	2 cut(s)	63, 70
BspANI	GGCC	1 cut(s)	831
BspCNI	CTCAG	3 cut(s)	259, 721, 1040
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	2 cut(s)	6, 67
BspMAI	CTGCAG	1 cut(s)	481
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	5 cut(s)	12, 326, 495, 536, 959
BspQI	GCTCTTC	1 cut(s)	932
BspT107I	GGYRCC	1 cut(s)	65
BsrDI	GCAATG	3 cut(s)	515, 724, 809
BsrFI	RCCGGY	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	3 cut(s)	317, 375, 1011
BssMI	GATC	8 cut(s)	4, 226, 331, 487, 541, 711, 851, 964
Bst2UI	CCWGG	2 cut(s)	168, 617
Bst4CI	ACNGT	2 cut(s)	396, 669
Bst6I	CTCTTC	1 cut(s)	932
BstC8I	GCNNGC	2 cut(s)	70, 522
BstDEI	CTNAG	5 cut(s)	267, 491, 729, 791, 1027
BstENI	CCTNNNNNAGG	1 cut(s)	695
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	8 cut(s)	7, 229, 334, 490, 544, 714, 854, 967
BstMAI	GTCTC	2 cut(s)	198, 212
BstMBI	GATC	8 cut(s)	4, 226, 331, 487, 541, 711, 851, 964
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 883
BstNI	CCWGG	2 cut(s)	168, 617
BstNSI	RCATGY	1 cut(s)	820
BstSCI	CCNGG	5 cut(s)	52, 166, 316, 615, 1010
BstSFI	CTRYAG	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	409, 616
BstX2I	RGATCY	2 cut(s)	4, 487
BstYI	RGATCY	2 cut(s)	4, 487
BsuI	GTATCC	1 cut(s)	1018
BsuRI	GGCC	1 cut(s)	831
BtgZI	GCGATG	1 cut(s)	1008
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	383
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	70, 522
CaiI	CAGNNNCTG	2 cut(s)	364, 974
CciI	TCATGA	1 cut(s)	553
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	829
CspCI	CAANNNNNGTGG	2 cut(s)	498, 533
CviAII	CATG	4 cut(s)	554, 743, 817, 874
DdeI	CTNAG	5 cut(s)	267, 491, 729, 791, 1027
DpnI	GATC	8 cut(s)	6, 228, 333, 489, 543, 713, 853, 966
DpnII	GATC	8 cut(s)	4, 226, 331, 487, 541, 711, 851, 964
Eam1104I	CTCTTC	1 cut(s)	932
EarI	CTCTTC	1 cut(s)	932
Ecl136II	GAGCTC	2 cut(s)	469, 497
Eco24I	GRGCYC	2 cut(s)	471, 499
Eco53kI	GAGCTC	2 cut(s)	469, 497
Eco57I	CTGAAG	1 cut(s)	341
EcoICRI	GAGCTC	2 cut(s)	469, 497
EcoNI	CCTNNNNNAGG	1 cut(s)	695
EcoO109I	RGGNCCY	1 cut(s)	829
EcoRII	CCWGG	2 cut(s)	166, 615
EcoT22I	ATGCAT	2 cut(s)	744, 822
EcoT38I	GRGCYC	2 cut(s)	471, 499
FaeI	CATG	4 cut(s)	557, 746, 820, 877
FaiI	YATR	9 cut(s)	252, 311, 431, 555, 744, 818, 822, 824, 875
FalI	AAGNNNNNCTT	4 cut(s)	77, 109, 870, 902
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	4 cut(s)	553, 742, 816, 873
FauI	CCCGC	1 cut(s)	77
FauNDI	CATATG	1 cut(s)	822
Fnu4HI	GCNGC	2 cut(s)	423, 630
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	2 cut(s)	471, 499
Fsp4HI	GCNGC	2 cut(s)	423, 630
FspBI	CTAG	2 cut(s)	60, 929
GluI	GCNGC	2 cut(s)	423, 630
GsuI	CTGGAG	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	831
HapII	CCGG	4 cut(s)	53, 73, 317, 1011
Hin1II	CATG	4 cut(s)	557, 746, 820, 877
HindIII	AAGCTT	1 cut(s)	884
HinfI	GANTC	3 cut(s)	205, 380, 775
HpaII	CCGG	4 cut(s)	53, 73, 317, 1011
HphI	GGTGA	1 cut(s)	56
Hpy188I	TCNGA	8 cut(s)	41, 268, 276, 297, 360, 376, 730, 976
Hpy188III	TCNNGA	4 cut(s)	211, 329, 485, 554
HpyAV	CCTTC	1 cut(s)	889
HpyCH4III	ACNGT	2 cut(s)	396, 669
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 883
HpyF3I	CTNAG	5 cut(s)	267, 491, 729, 791, 1027
Hsp92II	CATG	4 cut(s)	557, 746, 820, 877
Kzo9I	GATC	8 cut(s)	4, 226, 331, 487, 541, 711, 851, 964
LguI	GCTCTTC	1 cut(s)	932
LmnI	GCTCC	3 cut(s)	90, 169, 451
Lsp1109I	GCAGC	2 cut(s)	409, 616
LweI	GCATC	2 cut(s)	729, 734
MaeI	CTAG	2 cut(s)	60, 929
MaeIII	GTNAC	4 cut(s)	44, 80, 381, 433
MalI	GATC	8 cut(s)	6, 228, 333, 489, 543, 713, 853, 966
MboI	GATC	8 cut(s)	4, 226, 331, 487, 541, 711, 851, 964
MboII	GAAGA	6 cut(s)	125, 167, 347, 569, 632, 949
MflI	RGATCY	2 cut(s)	4, 487
MhlI	GDGCHC	3 cut(s)	70, 471, 499
MluCI	AATT	9 cut(s)	349, 530, 549, 560, 577, 746, 800, 960, 986
MlyI	GAGTC	2 cut(s)	214, 389
MmeI	TCCRAC	2 cut(s)	378, 671
Mph1103I	ATGCAT	2 cut(s)	744, 822
MroXI	GAANNNNTTC	1 cut(s)	611
MseI	TTAA	3 cut(s)	141, 671, 917
MslI	CAYNNNNRTG	1 cut(s)	821
MspA1I	CMGCKG	1 cut(s)	1031
MspI	CCGG	4 cut(s)	53, 73, 317, 1011
MspR9I	CCNGG	5 cut(s)	54, 168, 318, 617, 1012
Mva1269I	GAATGC	2 cut(s)	283, 425
MvaI	CCWGG	2 cut(s)	168, 617
MwoI	GCNNNNNNNGC	2 cut(s)	69, 883
NciI	CCSGG	3 cut(s)	54, 318, 1012
NdeI	CATATG	1 cut(s)	822
NdeII	GATC	8 cut(s)	4, 226, 331, 487, 541, 711, 851, 964
NlaIII	CATG	4 cut(s)	557, 746, 820, 877
NlaIV	GGNNCC	2 cut(s)	6, 67
NmuCI	GTSAC	2 cut(s)	44, 381
NsiI	ATGCAT	2 cut(s)	744, 822
NspI	RCATGY	1 cut(s)	820
PagI	TCATGA	1 cut(s)	553
PciSI	GCTCTTC	1 cut(s)	932
PctI	GAATGC	2 cut(s)	283, 425
PdmI	GAANNNNTTC	1 cut(s)	611
PfeI	GAWTC	1 cut(s)	775
PfoI	TCCNGGA	2 cut(s)	52, 615
PkrI	GCNGC	2 cut(s)	424, 631
PleI	GAGTC	2 cut(s)	213, 388
PpsI	GAGTC	2 cut(s)	213, 388
PsiI	TTATAA	1 cut(s)	311
Psp124BI	GAGCTC	2 cut(s)	471, 499
Psp6I	CCWGG	2 cut(s)	166, 615
PspGI	CCWGG	2 cut(s)	166, 615
PspN4I	GGNNCC	2 cut(s)	6, 67
PspPI	GGNCC	1 cut(s)	829
PstI	CTGCAG	1 cut(s)	481
PstNI	CAGNNNCTG	2 cut(s)	364, 974
PsuI	RGATCY	2 cut(s)	4, 487
PvuII	CAGCTG	1 cut(s)	1031
RseI	CAYNNNNRTG	1 cut(s)	821
SacI	GAGCTC	2 cut(s)	471, 499
SapI	GCTCTTC	1 cut(s)	932
SaqAI	TTAA	3 cut(s)	141, 671, 917
SatI	GCNGC	2 cut(s)	423, 630
Sau3AI	GATC	8 cut(s)	4, 226, 331, 487, 541, 711, 851, 964
Sau96I	GGNCC	1 cut(s)	829
SchI	GAGTC	2 cut(s)	214, 389
ScrFI	CCNGG	5 cut(s)	54, 168, 318, 617, 1012
SduI	GDGCHC	3 cut(s)	70, 471, 499
SfaNI	GCATC	2 cut(s)	729, 734
SfcI	CTRYAG	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	821
SmlI	CTYRAG	2 cut(s)	470, 503
SmoI	CTYRAG	2 cut(s)	470, 503
Sse9I	AATT	9 cut(s)	349, 530, 549, 560, 577, 746, 800, 960, 986
SsiI	CCGC	2 cut(s)	63, 70
SspMI	CTAG	2 cut(s)	60, 929
SstI	GAGCTC	2 cut(s)	471, 499
StyD4I	CCNGG	5 cut(s)	52, 166, 316, 615, 1010
TaaI	ACNGT	2 cut(s)	396, 669
TaqI	TCGA	2 cut(s)	21, 153
TasI	AATT	9 cut(s)	349, 530, 549, 560, 577, 746, 800, 960, 986
TfiI	GAWTC	1 cut(s)	775
Tru1I	TTAA	3 cut(s)	141, 671, 917
Tru9I	TTAA	3 cut(s)	141, 671, 917
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	2 cut(s)	44, 381
TseI	GCWGC	2 cut(s)	422, 629
Tsp45I	GTSAC	2 cut(s)	44, 381
TspDTI	ATGAA	8 cut(s)	315, 418, 542, 570, 735, 759, 873, 1011
TspRI	CASTG	1 cut(s)	390
XagI	CCTNNNNNAGG	1 cut(s)	695
XapI	RAATTY	3 cut(s)	560, 577, 986
XceI	RCATGY	1 cut(s)	820
XmnI	GAANNNNTTC	1 cut(s)	611
XspI	CTAG	2 cut(s)	60, 929
Zsp2I	ATGCAT	2 cut(s)	744, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.