Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006769

Physical Location & Seq

Genomic Coordinates Forward (+)

545941 .. 546872

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0007200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCGTCTGAAGCTATTCCTTGCGCAGTTCTGGTATTCAGGATATTTACCCTTGCGGCCTGCGTTGCTTCTGGCTGGTTACTTGTTCTCGACCACTTTACAATTTCTAATCAGAAATTACGTTTTCAGGATCTGGTTACGTTCAGGTATGTGCTTTCTGCAGCAGTAATTGGAGCAGCATACAGCATACTACAGCTACCTTTTAATATATACTATGCTTCCACCCAAAAGCTTTTGATACGCAACGGATGCATGCCGGATTTTGATTTCTATGCCGACAAGGTAGTGAGCTTGATTCTATCTTCGGCTGTGGGAGCTGGTTTTGGAGCGGGAGTTGAGCTCAAAAAGTTTATCGAAGCGTTACTTCCTCTGCTCCGCCTTGACAACTTGAGGGAAGCACAAACCAAGAACGATGACTTCTATGAGAAGGCTCTTGTCGCTACCGGAATTCTCTTGGTTGGAGCTGTTTGCATGGCTGTGGTTTCAATCCTCACTTCCATTGCTCGAACTCCCGGTTTCTTCGGGTACCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0001510 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009506 GO:0009888 GO:0009987 GO:0010073 GO:0010468 GO:0016070 GO:0016071 GO:0016556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043484 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048507 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0071704 GO:0080009 GO:0080090 GO:0090304 GO:1901360 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Wtap

Protein Analysis

177

Amino Acids

19.34

Weight (kDa)

8.35

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	8 - 112	3e-16	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54170
fragaria_vesca	FvH4_5g05840 FvH4_5g05840 FvH4_5g05840 FvH4_5g05840
malus_domestica	MD06G1169900.v1.1
prunus_persica	Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1
pyrus_communis	pycom06g15130
rosa_chinensis	RchiOBHm_Chr3g0448991 RchiOBHm_Chr7g0192981
rosa_laevigata	RLG00000004305 RLG00000014553
rosa_multiflora	Rmu_sc0002040.1_g000066 Rmu_sc0027188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262480
rosa_rugosa	Rorug05G0014700 Rorug07G0007000 Rorug07G0007100 Rorug07G0007200
rosa_samantha	Rh7AG132000 Rh7BG132800 Rh7CG136000 Rh7DG133900
rosa_wichuraiana	Rw7G011260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	25
Acc65I	GGTACC	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	525
AccBSI	CCGCTC	1 cut(s)	329
AciI	CCGC	3 cut(s)	56, 329, 376
AclWI	GGATC	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	447
AcuI	CTGAAG	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	527
AgeI	ACCGGT	1 cut(s)	528
AgsI	TTSAA	1 cut(s)	486
AluBI	AGCT	7 cut(s)	14, 196, 232, 291, 317, 340, 464
AluI	AGCT	7 cut(s)	14, 196, 232, 291, 317, 340, 464
Alw21I	GWGCWC	1 cut(s)	342
AlwI	GGATC	1 cut(s)	138
AlwNI	CAGNNNCTG	1 cut(s)	133
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	2 cut(s)	161, 176
ApoI	RAATTY	1 cut(s)	447
AsiGI	ACCGGT	1 cut(s)	528
Asp700I	GAANNNNTTC	1 cut(s)	15
Asp718I	GGTACC	1 cut(s)	525
AspLEI	GCGC	1 cut(s)	26
AsuC2I	CCSGG	1 cut(s)	513
BanI	GGYRCC	1 cut(s)	525
BanII	GRGCYC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	173, 188
BcnI	CCSGG	1 cut(s)	513
BfmI	CTRYAG	2 cut(s)	159, 191
BisI	GCNGC	3 cut(s)	57, 162, 177
BlsI	GCNGC	3 cut(s)	58, 163, 178
Bme1390I	CCNGG	1 cut(s)	513
BmiI	GGNNCC	1 cut(s)	527
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	239
BplI	GAGNNNNNCTC	2 cut(s)	324, 356
BpuEI	CTTGAG	1 cut(s)	409
BpuMI	CCSGG	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	2 cut(s)	443, 528
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bse118I	RCCGGY	1 cut(s)	528
Bse3DI	GCAATG	1 cut(s)	498
BseGI	GGATG	1 cut(s)	254
BseMI	GCAATG	1 cut(s)	498
BseXI	GCAGC	2 cut(s)	173, 188
BshFI	GGCC	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	525
BshTI	ACCGGT	1 cut(s)	528
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	4 cut(s)	257, 444, 513, 529
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	3 cut(s)	56, 329, 376
BspANI	GGCC	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	527
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	525
BsrBI	CCGCTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	498
BsrFI	RCCGGY	1 cut(s)	528
BssAI	RCCGGY	1 cut(s)	528
BssMI	GATC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	61, 254
BstF5I	GGATG	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 65, 249, 314, 437
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	2 cut(s)	159, 191
BstV1I	GCAGC	2 cut(s)	173, 188
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	254
Cac8I	GCNNGC	2 cut(s)	61, 254
CaiI	CAGNNNCTG	1 cut(s)	133
CfoI	GCGC	1 cut(s)	26
Cfr10I	RCCGGY	1 cut(s)	528
Csp6I	GTAC	1 cut(s)	526
CspAI	ACCGGT	1 cut(s)	528
CviAII	CATG	2 cut(s)	253, 472
CviQI	GTAC	1 cut(s)	526
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EciI	GGCGGA	1 cut(s)	365
Ecl136II	GAGCTC	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	342
Eco53kI	GAGCTC	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	340
EcoRI	GAATTC	1 cut(s)	447
EcoT22I	ATGCAT	1 cut(s)	254
EcoT38I	GRGCYC	1 cut(s)	342
FaeI	CATG	2 cut(s)	256, 475
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FatI	CATG	2 cut(s)	252, 471
FauI	CCCGC	1 cut(s)	322
Fnu4HI	GCNGC	3 cut(s)	57, 162, 177
FokI	GGATG	1 cut(s)	261
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	3 cut(s)	57, 162, 177
FspI	TGCGCA	1 cut(s)	25
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	3 cut(s)	57, 162, 177
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	4 cut(s)	257, 444, 513, 529
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	256, 475
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	1 cut(s)	295
HpaII	CCGG	4 cut(s)	257, 444, 513, 529
Hpy188I	TCNGA	2 cut(s)	10, 114
Hpy188III	TCNNGA	3 cut(s)	40, 89, 128
HpyAV	CCTTC	1 cut(s)	421
HpyCH4IV	ACGT	2 cut(s)	121, 140
HpyCH4V	TGCA	3 cut(s)	161, 252, 471
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 65, 249, 314, 437
HpySE526I	ACGT	2 cut(s)	121, 140
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	256, 475
HspAI	GCGC	1 cut(s)	24
KpnI	GGTACC	1 cut(s)	529
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	5 cut(s)	173, 314, 326, 378, 461
Lsp1109I	GCAGC	2 cut(s)	173, 188
LweI	GCATC	1 cut(s)	239
MaeII	ACGT	2 cut(s)	121, 140
MaeIII	GTNAC	3 cut(s)	78, 136, 360
MalI	GATC	1 cut(s)	132
MbiI	CCGCTC	1 cut(s)	329
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	294, 511
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	4 cut(s)	102, 116, 168, 447
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	3 cut(s)	378, 384, 500
Mph1103I	ATGCAT	1 cut(s)	254
MroXI	GAANNNNTTC	1 cut(s)	15
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	476
MspI	CCGG	4 cut(s)	257, 444, 513, 529
MspR9I	CCNGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	5 cut(s)	11, 65, 249, 314, 437
NciI	CCSGG	1 cut(s)	513
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	256, 475
NlaIV	GGNNCC	1 cut(s)	527
NsbI	TGCGCA	1 cut(s)	25
NsiI	ATGCAT	1 cut(s)	254
NspI	RCATGY	1 cut(s)	256
PaeI	GCATGC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	295
PinAI	ACCGGT	1 cut(s)	528
PkrI	GCNGC	3 cut(s)	58, 163, 178
Psp124BI	GAGCTC	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	527
PstI	CTGCAG	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
RseI	CAYNNNNRTG	1 cut(s)	476
SacI	GAGCTC	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	3 cut(s)	57, 162, 177
Sau3AI	GATC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	1 cut(s)	342
SfaNI	GCATC	1 cut(s)	239
SfcI	CTRYAG	2 cut(s)	159, 191
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
SphI	GCATGC	1 cut(s)	256
Sse9I	AATT	4 cut(s)	102, 116, 168, 447
SsiI	CCGC	3 cut(s)	56, 329, 376
SstI	GAGCTC	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	511
TaiI	ACGT	2 cut(s)	124, 143
TaqI	TCGA	3 cut(s)	90, 354, 505
TasI	AATT	4 cut(s)	102, 116, 168, 447
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	2 cut(s)	161, 176
TspGWI	ACGGA	1 cut(s)	261
XapI	RAATTY	1 cut(s)	447
XceI	RCATGY	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	15
Zsp2I	ATGCAT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.