Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027188.1

Orthogroup ID

OG0006769

Physical Location & Seq

Genomic Coordinates Forward (+)

30 .. 548

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027188.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atggaatatgatgctgcaaaatctgaggttcagaagtggcattctgcatttctgaatgaaccctttataaatccggggacttctcctgatcctacattagtcatcaattatcttcagaccctgaaaaactccgaggagtcactgaaagaacagttggagaaagcaaagaaaaaggaagctgcattcatagttacatttgcaaaacgggagcaggaggtcgcagagctcaaggtaatgtcttttgatgtctggtcccttttaaatccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0001510 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009506 GO:0009888 GO:0009987 GO:0010073 GO:0010468 GO:0016070 GO:0016071 GO:0016556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043484 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048507 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0071704 GO:0080009 GO:0080090 GO:0090304 GO:1901360 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Wtap

Protein Analysis

89

Amino Acids

10.22

Weight (kDa)

5.13

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54170
fragaria_vesca	FvH4_5g05840 FvH4_5g05840 FvH4_5g05840 FvH4_5g05840
malus_domestica	MD06G1169900.v1.1
prunus_persica	Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1
pyrus_communis	pycom06g15130
rosa_chinensis	RchiOBHm_Chr3g0448991 RchiOBHm_Chr7g0192981
rosa_laevigata	RLG00000004305 RLG00000014553
rosa_multiflora	Rmu_sc0002040.1_g000066 Rmu_sc0027188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262480
rosa_rugosa	Rorug05G0014700 Rorug07G0007000 Rorug07G0007100 Rorug07G0007200
rosa_samantha	Rh7AG132000 Rh7BG132800 Rh7CG136000 Rh7DG133900
rosa_wichuraiana	Rw7G011260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	68
AclWI	GGATC	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	98
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	2 cut(s)	179, 226
AluI	AGCT	2 cut(s)	179, 226
Alw21I	GWGCWC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	83
AlwNI	CAGNNNCTG	1 cut(s)	121
ApeKI	GCWGC	2 cut(s)	14, 179
AspS9I	GGNCC	1 cut(s)	252
AsuC2I	CCSGG	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	75
BisI	GCNGC	2 cut(s)	15, 180
BlsI	GCNGC	2 cut(s)	16, 181
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	74, 132
BseDI	CCNNGG	2 cut(s)	74, 132
BseMII	CTCAG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	2 cut(s)	91, 238
BsmFI	GGGAC	2 cut(s)	91, 238
BsmI	GAATGC	2 cut(s)	40, 182
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	254
BspPI	GGATC	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	74, 132
BssMI	GATC	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	24
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	140
CaiI	CAGNNNCTG	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	252
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	2 cut(s)	179, 226
CviKI_1	RGCY	2 cut(s)	179, 226
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
DraI	TTTAAA	1 cut(s)	261
Ecl136II	GAGCTC	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	228
FaeI	CATG	1 cut(s)	270
FaiI	YATR	4 cut(s)	9, 68, 188, 268
FaqI	GGGAC	2 cut(s)	91, 238
FatI	CATG	1 cut(s)	266
Fnu4HI	GCNGC	2 cut(s)	15, 180
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	15, 180
GluI	GCNGC	2 cut(s)	15, 180
HapII	CCGG	1 cut(s)	74
Hin1II	CATG	1 cut(s)	270
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	1 cut(s)	74
Hpy188I	TCNGA	5 cut(s)	25, 33, 54, 117, 133
Hpy188III	TCNNGA	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4V	TGCA	4 cut(s)	17, 47, 182, 200
HpyF3I	CTNAG	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	5 cut(s)	87, 99, 134, 197, 235
Lsp1109I	GCAGC	1 cut(s)	166
MaeIII	GTNAC	2 cut(s)	138, 190
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	3 cut(s)	19, 127, 208
MseI	TTAA	1 cut(s)	260
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	75
Mva1269I	GAATGC	2 cut(s)	40, 182
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	138
PctI	GAATGC	2 cut(s)	40, 182
PkrI	GCNGC	2 cut(s)	16, 181
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PsiI	TTATAA	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	252
PstNI	CAGNNNCTG	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	2 cut(s)	15, 180
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	1 cut(s)	252
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	5 cut(s)	30, 181, 219, 228, 234
SgeI	CNNG	9 cut(s)	86, 87, 98, 133, 145, 218, 224, 241, 262
SinI	GGWCC	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	106
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	153
TasI	AATT	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TscAI	CASTG	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	2 cut(s)	14, 179
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	2 cut(s)	72, 175
TspRI	CASTG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.