Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006769

Physical Location & Seq

Genomic Coordinates Reverse (-)

11048290 .. 11053080

Gene Structure 4791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG136000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGATTTTGTCTCTGCGTGAGAGTCTCCAGACCTGTAAGGATGATCTTGCAAAGTGCCAAATGGAATATGATGCTGCAAAATCTGAGGTTCAGAAGTGGCATTCTGCATTTCAGAATGAACCCTTTATAAATCCGGGGACTTCTCCTGATCCTACATTAGTCATCAATTATCTTCAGACCCTGAAAAACTCCGAGGAGTCACTGAAAGAACAGTTGGAGAAAGCAAAGAAAAAGGAAGCTGCATTCATAGTTACATTTGCAAAACGGGAGCAGGAGGTCGCAGAGCTCAAGTCTGCAGTTCGGGATCTTAGAGCTCAACTCAAGCCACCATCATTGCAGGCAAGAAAATTGTTGCTTGATCCAGCAATTCATGAGGAATTTACTCGTCTAAAGAATTTGGTTGAGGAGAAAGAAAAAAGATTGAAGCAGTTCCAGGAAGATGTCGCTGCCAATAATTTTACTCCAACAAGCAAGATGGGGAAACAGTTAATGGCTAAATGTAAGACCCTGCAAGAGGAAAATGAGGAGATCGGCAATGAAGCATCTGAGGGAAAGATGCATGAATTATCCATGAAACTTGCTTTACAAAAGAACCAAAATGCAGAACTTAGAAGTCAATTTGAAGCATTGCACATGCATATGGAGGGCCTCACAAATGATGTGGAAAGATCAAATGAAATGGTGGTCATCATGCAAGAGAAGCTTGAACAGAAGGATAGTGAAATCAAAAGATTAAAGGACGAGCTAGAGCAGAAGAGCGTAATGGTGGAGGAGAAAATTGATCCAGCTTCTGATAATGGAAAATTCAGCGATGAAGTGATGGTATCTGGGGAAGCCAATGGCTCAGATGATAAAGATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0001510 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009506 GO:0009888 GO:0009987 GO:0010073 GO:0010468 GO:0016070 GO:0016071 GO:0016556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043484 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048507 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0071704 GO:0080009 GO:0080090 GO:0090304 GO:1901360 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Wtap

Protein Analysis

287

Amino Acids

32.8

Weight (kDa)

5.15

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Wtap	PF17098	74 - 228	1.4e-51	WTAP/Mum2p family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54170
fragaria_vesca	FvH4_5g05840 FvH4_5g05840 FvH4_5g05840 FvH4_5g05840
malus_domestica	MD06G1169900.v1.1
prunus_persica	Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1
pyrus_communis	pycom06g15130
rosa_chinensis	RchiOBHm_Chr3g0448991 RchiOBHm_Chr7g0192981
rosa_laevigata	RLG00000004305 RLG00000014553
rosa_multiflora	Rmu_sc0002040.1_g000066 Rmu_sc0027188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262480
rosa_rugosa	Rorug05G0014700 Rorug07G0007000 Rorug07G0007100 Rorug07G0007200
rosa_samantha	Rh7AG132000 Rh7BG132800 Rh7CG136000 Rh7DG133900
rosa_wichuraiana	Rw7G011260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	128
AclWI	GGATC	4 cut(s)	143, 312, 353, 776
AcsI	RAATTY	3 cut(s)	377, 394, 803
AcuI	CTGAAG	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	514
AgsI	TTSAA	3 cut(s)	424, 623, 707
AjnI	CCWGG	1 cut(s)	432
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	6 cut(s)	239, 286, 314, 703, 745, 788
AluI	AGCT	6 cut(s)	239, 286, 314, 703, 745, 788
Alw21I	GWGCWC	2 cut(s)	288, 316
Alw26I	GTCTC	2 cut(s)	15, 29
AlwI	GGATC	4 cut(s)	143, 312, 353, 776
AlwNI	CAGNNNCTG	2 cut(s)	181, 791
AoxI	GGCC	1 cut(s)	646
ApeKI	GCWGC	3 cut(s)	74, 239, 446
ApoI	RAATTY	3 cut(s)	377, 394, 803
Asp700I	GAANNNNTTC	1 cut(s)	428
AspS9I	GGNCC	1 cut(s)	646
AsuC2I	CCSGG	1 cut(s)	135
BanII	GRGCYC	2 cut(s)	288, 316
Bbv12I	GWGCWC	2 cut(s)	288, 316
BbvI	GCAGC	3 cut(s)	61, 226, 433
BccI	CCATC	3 cut(s)	337, 469, 814
BciT130I	CCWGG	1 cut(s)	434
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	15, 29
BfaI	CTAG	1 cut(s)	746
BfmI	CTRYAG	1 cut(s)	294
BisI	GCNGC	3 cut(s)	75, 240, 447
BlsI	GCNGC	3 cut(s)	76, 241, 448
Bme1390I	CCNGG	2 cut(s)	135, 434
BmgT120I	GGNCC	1 cut(s)	646
BmrFI	CCNGG	2 cut(s)	135, 434
BmsI	GCATC	3 cut(s)	61, 546, 551
BplI	GAGNNNNNCTC	2 cut(s)	303, 335
BpmI	CTGGAG	1 cut(s)	11
BpuEI	CTTGAG	2 cut(s)	272, 305
BpuMI	CCSGG	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	134, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	514
Bse3DI	GCAATG	3 cut(s)	332, 541, 626
BseBI	CCWGG	1 cut(s)	434
BseDI	CCNNGG	2 cut(s)	134, 192
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	514
BseMI	GCAATG	3 cut(s)	332, 541, 626
BseMII	CTCAG	3 cut(s)	75, 537, 858
BseRI	GAGGAG	4 cut(s)	209, 419, 539, 785
BseXI	GCAGC	3 cut(s)	61, 226, 433
BshFI	GGCC	1 cut(s)	648
BsiHKAI	GWGCWC	2 cut(s)	288, 316
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	514
BsmAI	GTCTC	2 cut(s)	15, 29
BsmFI	GGGAC	1 cut(s)	151
BsmI	GAATGC	2 cut(s)	100, 242
BsnI	GGCC	1 cut(s)	648
Bsp1286I	GDGCHC	2 cut(s)	288, 316
Bsp143I	GATC	7 cut(s)	43, 148, 304, 358, 528, 668, 781
BspANI	GGCC	1 cut(s)	648
BspCNI	CTCAG	3 cut(s)	76, 538, 857
BspHI	TCATGA	1 cut(s)	370
BspMAI	CTGCAG	1 cut(s)	298
BspPI	GGATC	4 cut(s)	143, 312, 353, 776
BspQI	GCTCTTC	1 cut(s)	749
BsrDI	GCAATG	3 cut(s)	332, 541, 626
BssECI	CCNNGG	2 cut(s)	134, 192
BssMI	GATC	7 cut(s)	43, 148, 304, 358, 528, 668, 781
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	2 cut(s)	213, 486
Bst6I	CTCTTC	1 cut(s)	749
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	5 cut(s)	84, 308, 546, 608, 844
BstENI	CCTNNNNNAGG	1 cut(s)	512
BstF5I	GGATG	1 cut(s)	46
BstKTI	GATC	7 cut(s)	46, 151, 307, 361, 531, 671, 784
BstMAI	GTCTC	2 cut(s)	15, 29
BstMBI	GATC	7 cut(s)	43, 148, 304, 358, 528, 668, 781
BstMWI	GCNNNNNNNGC	1 cut(s)	700
BstNI	CCWGG	1 cut(s)	434
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	2 cut(s)	133, 432
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	3 cut(s)	61, 226, 433
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	648
BtgZI	GCGATG	1 cut(s)	825
BtsCI	GGATG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	339
CaiI	CAGNNNCTG	2 cut(s)	181, 791
CciI	TCATGA	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	646
CspCI	CAANNNNNGTGG	4 cut(s)	315, 350, 642, 677
CviAII	CATG	5 cut(s)	371, 560, 571, 634, 691
DdeI	CTNAG	5 cut(s)	84, 308, 546, 608, 844
DpnI	GATC	7 cut(s)	45, 150, 306, 360, 530, 670, 783
DpnII	GATC	7 cut(s)	43, 148, 304, 358, 528, 668, 781
Eam1104I	CTCTTC	1 cut(s)	749
EarI	CTCTTC	1 cut(s)	749
Ecl136II	GAGCTC	2 cut(s)	286, 314
Eco24I	GRGCYC	2 cut(s)	288, 316
Eco53kI	GAGCTC	2 cut(s)	286, 314
Eco57I	CTGAAG	1 cut(s)	158
EcoICRI	GAGCTC	2 cut(s)	286, 314
EcoNI	CCTNNNNNAGG	1 cut(s)	512
EcoO109I	RGGNCCY	1 cut(s)	646
EcoRII	CCWGG	1 cut(s)	432
EcoT22I	ATGCAT	2 cut(s)	561, 639
EcoT38I	GRGCYC	2 cut(s)	288, 316
FaeI	CATG	5 cut(s)	374, 563, 574, 637, 694
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	5 cut(s)	370, 559, 570, 633, 690
FauNDI	CATATG	1 cut(s)	639
Fnu4HI	GCNGC	3 cut(s)	75, 240, 447
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	2 cut(s)	288, 316
Fsp4HI	GCNGC	3 cut(s)	75, 240, 447
FspBI	CTAG	1 cut(s)	746
GluI	GCNGC	3 cut(s)	75, 240, 447
GsuI	CTGGAG	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	648
HapII	CCGG	1 cut(s)	134
Hin1II	CATG	5 cut(s)	374, 563, 574, 637, 694
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	2 cut(s)	22, 197
HpaII	CCGG	1 cut(s)	134
Hpy188I	TCNGA	8 cut(s)	85, 93, 114, 177, 193, 547, 793, 847
Hpy188III	TCNNGA	4 cut(s)	28, 146, 302, 371
HpyAV	CCTTC	1 cut(s)	706
HpyCH4III	ACNGT	2 cut(s)	213, 486
HpyF10VI	GCNNNNNNNGC	1 cut(s)	700
HpyF3I	CTNAG	5 cut(s)	84, 308, 546, 608, 844
Hsp92II	CATG	5 cut(s)	374, 563, 574, 637, 694
Kzo9I	GATC	7 cut(s)	43, 148, 304, 358, 528, 668, 781
LguI	GCTCTTC	1 cut(s)	749
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	3 cut(s)	61, 226, 433
LweI	GCATC	3 cut(s)	61, 546, 551
MaeI	CTAG	1 cut(s)	746
MaeIII	GTNAC	2 cut(s)	198, 250
MalI	GATC	7 cut(s)	45, 150, 306, 360, 530, 670, 783
MboI	GATC	7 cut(s)	43, 148, 304, 358, 528, 668, 781
MboII	GAAGA	3 cut(s)	164, 449, 766
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	2 cut(s)	288, 316
MlyI	GAGTC	2 cut(s)	31, 206
MmeI	TCCRAC	2 cut(s)	195, 488
Mph1103I	ATGCAT	2 cut(s)	561, 639
MroXI	GAANNNNTTC	1 cut(s)	428
MseI	TTAA	2 cut(s)	488, 734
MslI	CAYNNNNRTG	1 cut(s)	638
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	2 cut(s)	135, 434
Mva1269I	GAATGC	2 cut(s)	100, 242
MvaI	CCWGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	1 cut(s)	700
NciI	CCSGG	1 cut(s)	135
NdeI	CATATG	1 cut(s)	639
NdeII	GATC	7 cut(s)	43, 148, 304, 358, 528, 668, 781
NlaIII	CATG	5 cut(s)	374, 563, 574, 637, 694
NmuCI	GTSAC	1 cut(s)	198
NsiI	ATGCAT	2 cut(s)	561, 639
NspI	RCATGY	1 cut(s)	637
PagI	TCATGA	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	749
PctI	GAATGC	2 cut(s)	100, 242
PdmI	GAANNNNTTC	1 cut(s)	428
PfoI	TCCNGGA	1 cut(s)	432
PkrI	GCNGC	3 cut(s)	76, 241, 448
PleI	GAGTC	2 cut(s)	30, 205
PpsI	GAGTC	2 cut(s)	30, 205
PsiI	TTATAA	1 cut(s)	128
Psp124BI	GAGCTC	2 cut(s)	288, 316
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspPI	GGNCC	1 cut(s)	646
PstI	CTGCAG	1 cut(s)	298
PstNI	CAGNNNCTG	2 cut(s)	181, 791
PsuI	RGATCY	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	638
SacI	GAGCTC	2 cut(s)	288, 316
SapI	GCTCTTC	1 cut(s)	749
SaqAI	TTAA	2 cut(s)	488, 734
SatI	GCNGC	3 cut(s)	75, 240, 447
Sau3AI	GATC	7 cut(s)	43, 148, 304, 358, 528, 668, 781
Sau96I	GGNCC	1 cut(s)	646
SchI	GAGTC	2 cut(s)	31, 206
ScrFI	CCNGG	2 cut(s)	135, 434
SduI	GDGCHC	2 cut(s)	288, 316
SetI	ASST	9 cut(s)	35, 90, 241, 279, 288, 316, 705, 747, 790
SfaNI	GCATC	3 cut(s)	61, 546, 551
SfcI	CTRYAG	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	638
SmlI	CTYRAG	2 cut(s)	287, 320
SmoI	CTYRAG	2 cut(s)	287, 320
SspMI	CTAG	1 cut(s)	746
SstI	GAGCTC	2 cut(s)	288, 316
StyD4I	CCNGG	2 cut(s)	133, 432
TaaI	ACNGT	2 cut(s)	213, 486
Tru1I	TTAA	2 cut(s)	488, 734
Tru9I	TTAA	2 cut(s)	488, 734
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	198
TseI	GCWGC	3 cut(s)	74, 239, 446
Tsp45I	GTSAC	1 cut(s)	198
TspDTI	ATGAA	8 cut(s)	132, 235, 359, 552, 576, 587, 690, 828
TspRI	CASTG	1 cut(s)	207
XagI	CCTNNNNNAGG	1 cut(s)	512
XapI	RAATTY	3 cut(s)	377, 394, 803
XceI	RCATGY	1 cut(s)	637
XmnI	GAANNNNTTC	1 cut(s)	428
XspI	CTAG	1 cut(s)	746
Zsp2I	ATGCAT	2 cut(s)	561, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.