Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006769

Physical Location & Seq

Genomic Coordinates Reverse (-)

19715588 .. 19720668

Gene Structure 5081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGGCGGTCGAACTGTGGAACCGCGCGCAGCTGATAACTGCTCTTTCCCCCCAAACCCAAAACCCCTTTGTTTCCGATCCGCACTGCATCAAACGGCTTGTGCTTCCAGCTTCGCAGCTACTGTTCGCTTATCAAGTTCTAGGGTTTTGAAGATTTCAAATTCCATGGCTACCCATGACGATGATGACTTCGGTGGCGATTCTCCCAGTCCCAGGCGTGGTAAAAAGAGAAGCTTTGGCGATGACGACTTAGAATTTGATCCTTTCGGCTTGAAACAGGGTAACTCGAAAGTTGAAGAAACTGCTCCTGGTGGTGCAACAGCGATGATTTTGACTCTTCGTGAGAGTCTTCAAAACTGTAAAGATACTCTTGCAACATGCCAAACAGAACTTGAAGCTGCAAAATCTGAGATTCAAAAGTGGCATTCTTCATTTCAGAATGAACCCTGCTTAGCTTCTGGAACTTCTCCTGATCCTAAACTGGTTATCAATTATCTTCAGTCCTTGAAAAACTCCGAGGAGTCATTGAAAGAACAGTTAGAGAAAGCAAAGAAAAAGGAAGCTGCGTTCATTGTCACATTTGCAAAACGGGAGCAGGAGATAGCAGAGCTCAAGTCTGCAGTCCGGGAGCTTAAAGCTCAACTCAAGCCACCATCAATGCAGGCAAGAAGATTGCTACTCGATCCAGCAATTCATGAGGAGTTTACTCGTCTAAAGACTTTGGTTGAGGAGAAGGAAAAAAAGGTTAAGGAGTTGAAGGAAGATATCGAAGCTCTTTCATTTACTGCAGCAAGCAAGATGGGGAAGCAGTTAATGGCTAAATGTCGGACACTCCAAGAGGAAAATGAGGAGATTGGCAATGAAGCTTCTGAGGGAAAGATGCATGAATTATCTATGAAACTTGCGTTGCAAAAATCCCAAAATGCAGAACTCAGAAGTCAATTTGAAGGGTTGCACCAACATATGGAGGGGCTCACAAATGATGTTGAAAGATCAAATGAAATGGTGCGTATCACGCAAGAGCAGCTAGAGGAGAAAGATCGTGAAATCAAACGGTTAAAGCAGGAGCTGGAGCAGAAGAGCTTGATAGGGAAGGAGAAAGCAGATCCACCTTCTGACGCTAAGAAAGCTAGCGACGATGATGAGATGGTACCTGGAGAAGTCGACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0001510 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009506 GO:0009888 GO:0009987 GO:0010073 GO:0010468 GO:0016070 GO:0016071 GO:0016556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043484 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048507 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0071704 GO:0080009 GO:0080090 GO:0090304 GO:1901360 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Wtap

Protein Analysis

391

Amino Acids

43.55

Weight (kDa)

5.57

Isoelectric Point (pI)

55.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Wtap	PF17098	182 - 336	2.9e-52	WTAP/Mum2p family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54170
fragaria_vesca	FvH4_5g05840 FvH4_5g05840 FvH4_5g05840 FvH4_5g05840
malus_domestica	MD06G1169900.v1.1
prunus_persica	Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1
pyrus_communis	pycom06g15130
rosa_chinensis	RchiOBHm_Chr3g0448991 RchiOBHm_Chr7g0192981
rosa_laevigata	RLG00000004305 RLG00000014553
rosa_multiflora	Rmu_sc0002040.1_g000066 Rmu_sc0027188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262480
rosa_rugosa	Rorug05G0014700 Rorug07G0007000 Rorug07G0007100 Rorug07G0007200
rosa_samantha	Rh7AG132000 Rh7BG132800 Rh7CG136000 Rh7DG133900
rosa_wichuraiana	Rw7G011260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1150
AccB1I	GGYRCC	1 cut(s)	1150
AccB7I	CCANNNNNTGG	1 cut(s)	964
AccI	GTMKAC	1 cut(s)	1164
AccII	CGCG	2 cut(s)	25, 27
AciI	CCGC	3 cut(s)	6, 23, 81
AclWI	GGATC	5 cut(s)	72, 254, 467, 677, 1100
AcsI	RAATTY	2 cut(s)	160, 254
AcuI	CTGAAG	1 cut(s)	482
AfaI	GTAC	1 cut(s)	1152
AfiI	CCNNNNNNNGG	3 cut(s)	213, 218, 964
AjnI	CCWGG	3 cut(s)	212, 307, 1153
AloI	GAACNNNNNNTCC	2 cut(s)	551, 583
Alw21I	GWGCWC	1 cut(s)	612
AlwI	GGATC	5 cut(s)	72, 254, 467, 677, 1100
AlwNI	CAGNNNCTG	2 cut(s)	122, 1069
ApeKI	GCWGC	6 cut(s)	29, 116, 398, 563, 788, 1024
ApoI	RAATTY	2 cut(s)	160, 254
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
Asp718I	GGTACC	1 cut(s)	1150
AspLEI	GCGC	2 cut(s)	27, 29
AsuC2I	CCSGG	1 cut(s)	626
AsuNHI	GCTAGC	1 cut(s)	1130
BanI	GGYRCC	1 cut(s)	1150
BanII	GRGCYC	2 cut(s)	612, 975
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	612
BbvI	GCAGC	6 cut(s)	41, 128, 385, 550, 800, 1036
BccI	CCATC	3 cut(s)	661, 793, 1141
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	3 cut(s)	214, 309, 1155
BcnI	CCSGG	1 cut(s)	626
BfaI	CTAG	3 cut(s)	141, 1028, 1131
BfmI	CTRYAG	2 cut(s)	618, 786
BisI	GCNGC	6 cut(s)	30, 117, 399, 564, 789, 1025
BlpI	GCTNAGC	1 cut(s)	451
BlsI	GCNGC	6 cut(s)	31, 118, 400, 565, 790, 1026
Bme1390I	CCNGG	4 cut(s)	214, 309, 626, 1155
BmiI	GGNNCC	2 cut(s)	21, 1152
BmrFI	CCNGG	4 cut(s)	214, 309, 626, 1155
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	97, 870
BmtI	GCTAGC	1 cut(s)	1134
BmuI	ACTGGG	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	341
BpmI	CTGGAG	1 cut(s)	1091
Bpu1102I	GCTNAGC	1 cut(s)	451
BpuEI	CTTGAG	2 cut(s)	596, 629
BpuMI	CCSGG	1 cut(s)	626
BsaJI	CCNNGG	3 cut(s)	165, 212, 516
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 218, 964
Bse1I	ACTGG	2 cut(s)	207, 486
Bse3DI	GCAATG	1 cut(s)	865
BseBI	CCWGG	3 cut(s)	214, 309, 1155
BseDI	CCNNGG	3 cut(s)	165, 212, 516
BseLI	CCNNNNNNNGG	3 cut(s)	213, 218, 964
BseMI	GCAATG	1 cut(s)	865
BseMII	CTCAG	3 cut(s)	399, 861, 946
BseNI	ACTGG	2 cut(s)	207, 486
BsePI	GCGCGC	1 cut(s)	25
BseRI	GAGGAG	5 cut(s)	533, 713, 743, 863, 1046
BseXI	GCAGC	6 cut(s)	41, 128, 385, 550, 800, 1036
Bsh1236I	CGCG	2 cut(s)	25, 27
Bsh1285I	CGRYCG	1 cut(s)	10
BshNI	GGYRCC	1 cut(s)	1150
BsiEI	CGRYCG	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	612
BsiSI	CCGG	1 cut(s)	625
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	3 cut(s)	213, 218, 964
BsmFI	GGGAC	1 cut(s)	195
BsmI	GAATGC	1 cut(s)	424
Bsp1286I	GDGCHC	2 cut(s)	612, 975
Bsp143I	GATC	7 cut(s)	77, 259, 472, 682, 992, 1039, 1105
Bsp1720I	GCTNAGC	1 cut(s)	451
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	3 cut(s)	6, 23, 81
BspCNI	CTCAG	3 cut(s)	400, 862, 945
BspFNI	CGCG	2 cut(s)	25, 27
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	2 cut(s)	21, 1152
BspMAI	CTGCAG	2 cut(s)	622, 790
BspOI	GCTAGC	1 cut(s)	1134
BspPI	GGATC	5 cut(s)	72, 254, 467, 677, 1100
BspQI	GCTCTTC	1 cut(s)	1073
BspT107I	GGYRCC	1 cut(s)	1150
BsrDI	GCAATG	1 cut(s)	865
BsrI	ACTGG	2 cut(s)	207, 486
BssECI	CCNNGG	3 cut(s)	165, 212, 516
BssHII	GCGCGC	1 cut(s)	25
BssMI	GATC	7 cut(s)	77, 259, 472, 682, 992, 1039, 1105
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	3 cut(s)	214, 309, 1155
Bst4CI	ACNGT	5 cut(s)	16, 124, 359, 537, 1056
Bst6I	CTCTTC	2 cut(s)	342, 1073
BstC8I	GCNNGC	4 cut(s)	27, 663, 793, 1132
BstDEI	CTNAG	6 cut(s)	250, 408, 451, 870, 932, 1122
BstDSI	CCRYGG	1 cut(s)	165
BstFNI	CGCG	2 cut(s)	25, 27
BstHHI	GCGC	2 cut(s)	27, 29
BstKTI	GATC	7 cut(s)	80, 262, 475, 685, 995, 1042, 1108
BstMBI	GATC	7 cut(s)	77, 259, 472, 682, 992, 1039, 1105
BstMCI	CGRYCG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	3 cut(s)	1015, 1024, 1127
BstNI	CCWGG	3 cut(s)	214, 309, 1155
BstNSI	RCATGY	1 cut(s)	381
BstSCI	CCNGG	4 cut(s)	212, 307, 624, 1153
BstSFI	CTRYAG	2 cut(s)	618, 786
BstUI	CGCG	2 cut(s)	25, 27
BstV1I	GCAGC	6 cut(s)	41, 128, 385, 550, 800, 1036
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	1105
BstYI	RGATCY	1 cut(s)	1105
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	2 cut(s)	255, 338
BtsI	GCAGTG	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	83
Cac8I	GCNNGC	4 cut(s)	27, 663, 793, 1132
CaiI	CAGNNNCTG	2 cut(s)	122, 1069
CciI	TCATGA	1 cut(s)	694
CfoI	GCGC	2 cut(s)	27, 29
CseI	GACGC	1 cut(s)	1127
Csp6I	GTAC	1 cut(s)	1151
CviAII	CATG	5 cut(s)	166, 176, 378, 695, 884
CviQI	GTAC	1 cut(s)	1151
DdeI	CTNAG	6 cut(s)	250, 408, 451, 870, 932, 1122
DpnI	GATC	7 cut(s)	79, 261, 474, 684, 994, 1041, 1107
DpnII	GATC	7 cut(s)	77, 259, 472, 682, 992, 1039, 1105
Eam1104I	CTCTTC	2 cut(s)	342, 1073
EarI	CTCTTC	2 cut(s)	342, 1073
Ecl136II	GAGCTC	1 cut(s)	610
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	2 cut(s)	612, 975
Eco32I	GATATC	1 cut(s)	766
Eco53kI	GAGCTC	1 cut(s)	610
Eco57I	CTGAAG	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	610
EcoRII	CCWGG	3 cut(s)	212, 307, 1153
EcoRV	GATATC	1 cut(s)	766
EcoT14I	CCWWGG	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	885
EcoT38I	GRGCYC	2 cut(s)	612, 975
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	5 cut(s)	169, 179, 381, 698, 887
FaiI	YATR	8 cut(s)	167, 177, 379, 696, 885, 896, 963, 965
FalI	AAGNNNNNCTT	4 cut(s)	218, 250, 354, 386
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	5 cut(s)	165, 175, 377, 694, 883
FauNDI	CATATG	1 cut(s)	963
FblI	GTMKAC	1 cut(s)	1164
Fnu4HI	GCNGC	6 cut(s)	30, 117, 399, 564, 789, 1025
FriOI	GRGCYC	2 cut(s)	612, 975
Fsp4HI	GCNGC	6 cut(s)	30, 117, 399, 564, 789, 1025
FspBI	CTAG	3 cut(s)	141, 1028, 1131
GlaI	GCGC	2 cut(s)	26, 28
GluI	GCNGC	6 cut(s)	30, 117, 399, 564, 789, 1025
GsuI	CTGGAG	1 cut(s)	1091
HapII	CCGG	1 cut(s)	625
HgaI	GACGC	1 cut(s)	1127
HhaI	GCGC	2 cut(s)	27, 29
Hin1II	CATG	5 cut(s)	169, 179, 381, 698, 887
Hin6I	GCGC	2 cut(s)	25, 27
HinP1I	GCGC	2 cut(s)	25, 27
HincII	GTYRAC	1 cut(s)	1165
HindII	GTYRAC	1 cut(s)	1165
HindIII	AAGCTT	2 cut(s)	232, 864
HinfI	GANTC	5 cut(s)	200, 334, 346, 412, 521
HpaII	CCGG	1 cut(s)	625
Hpy166II	GTNNAC	2 cut(s)	705, 1165
Hpy188I	TCNGA	8 cut(s)	77, 409, 438, 517, 828, 871, 935, 1117
Hpy188III	TCNNGA	5 cut(s)	341, 459, 470, 695, 1043
Hpy8I	GTNNAC	2 cut(s)	705, 1165
Hpy99I	CGWCG	1 cut(s)	1139
HpyAV	CCTTC	5 cut(s)	727, 751, 941, 1087, 1122
HpyCH4III	ACNGT	5 cut(s)	16, 124, 359, 537, 1056
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1015, 1024, 1127
HpyF3I	CTNAG	6 cut(s)	250, 408, 451, 870, 932, 1122
Hsp92II	CATG	5 cut(s)	169, 179, 381, 698, 887
HspAI	GCGC	2 cut(s)	25, 27
KpnI	GGTACC	1 cut(s)	1154
Kzo9I	GATC	7 cut(s)	77, 259, 472, 682, 992, 1039, 1105
LguI	GCTCTTC	1 cut(s)	1073
LmnI	GCTCC	5 cut(s)	310, 592, 628, 1066, 1072
Lsp1109I	GCAGC	6 cut(s)	41, 128, 385, 550, 800, 1036
LweI	GCATC	2 cut(s)	97, 870
MaeI	CTAG	3 cut(s)	141, 1028, 1131
MaeIII	GTNAC	2 cut(s)	281, 574
MalI	GATC	7 cut(s)	79, 261, 474, 684, 994, 1041, 1107
MboI	GATC	7 cut(s)	77, 259, 472, 682, 992, 1039, 1105
MboII	GAAGA	9 cut(s)	163, 308, 329, 341, 420, 488, 681, 773, 1090
MflI	RGATCY	1 cut(s)	1105
MhlI	GDGCHC	2 cut(s)	612, 975
MluCI	AATT	6 cut(s)	160, 254, 490, 690, 887, 941
MlyI	GAGTC	3 cut(s)	328, 355, 530
MmeI	TCCRAC	1 cut(s)	806
MnlI	CCTC	8 cut(s)	511, 691, 721, 832, 841, 865, 961, 1024
Mph1103I	ATGCAT	1 cut(s)	885
MseI	TTAA	4 cut(s)	633, 747, 812, 1058
MslI	CAYNNNNRTG	1 cut(s)	180
MspA1I	CMGCKG	2 cut(s)	32, 1170
MspI	CCGG	1 cut(s)	625
MspR9I	CCNGG	4 cut(s)	214, 309, 626, 1155
Mva1269I	GAATGC	1 cut(s)	424
MvaI	CCWGG	3 cut(s)	214, 309, 1155
MvnI	CGCG	2 cut(s)	25, 27
MwoI	GCNNNNNNNGC	3 cut(s)	1015, 1024, 1127
NciI	CCSGG	1 cut(s)	626
NcoI	CCATGG	1 cut(s)	165
NdeI	CATATG	1 cut(s)	963
NdeII	GATC	7 cut(s)	77, 259, 472, 682, 992, 1039, 1105
NheI	GCTAGC	1 cut(s)	1130
NlaIII	CATG	5 cut(s)	169, 179, 381, 698, 887
NlaIV	GGNNCC	2 cut(s)	21, 1152
NmuCI	GTSAC	1 cut(s)	574
NsiI	ATGCAT	1 cut(s)	885
NspI	RCATGY	1 cut(s)	381
PagI	TCATGA	1 cut(s)	694
PauI	GCGCGC	1 cut(s)	25
PciSI	GCTCTTC	1 cut(s)	1073
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	200, 412
PflMI	CCANNNNNTGG	1 cut(s)	964
PfoI	TCCNGGA	1 cut(s)	624
PkrI	GCNGC	6 cut(s)	31, 118, 400, 565, 790, 1026
PleI	GAGTC	3 cut(s)	328, 354, 529
PpsI	GAGTC	3 cut(s)	328, 354, 529
Psp124BI	GAGCTC	1 cut(s)	612
Psp6I	CCWGG	3 cut(s)	212, 307, 1153
PspGI	CCWGG	3 cut(s)	212, 307, 1153
PspN4I	GGNNCC	2 cut(s)	21, 1152
PstI	CTGCAG	2 cut(s)	622, 790
PstNI	CAGNNNCTG	2 cut(s)	122, 1069
PsuI	RGATCY	1 cut(s)	1105
PteI	GCGCGC	1 cut(s)	25
PvuII	CAGCTG	2 cut(s)	32, 1170
RsaI	GTAC	1 cut(s)	1152
RsaNI	GTAC	1 cut(s)	1151
RseI	CAYNNNNRTG	1 cut(s)	180
SacI	GAGCTC	1 cut(s)	612
SalI	GTCGAC	1 cut(s)	1163
SapI	GCTCTTC	1 cut(s)	1073
SaqAI	TTAA	4 cut(s)	633, 747, 812, 1058
SatI	GCNGC	6 cut(s)	30, 117, 399, 564, 789, 1025
Sau3AI	GATC	7 cut(s)	77, 259, 472, 682, 992, 1039, 1105
SchI	GAGTC	3 cut(s)	328, 355, 530
ScrFI	CCNGG	4 cut(s)	214, 309, 626, 1155
SduI	GDGCHC	2 cut(s)	612, 975
SfaNI	GCATC	2 cut(s)	97, 870
SfcI	CTRYAG	2 cut(s)	618, 786
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	2 cut(s)	611, 644
SmoI	CTYRAG	2 cut(s)	611, 644
Sse9I	AATT	6 cut(s)	160, 254, 490, 690, 887, 941
SsiI	CCGC	3 cut(s)	6, 23, 81
SspMI	CTAG	3 cut(s)	141, 1028, 1131
SstI	GAGCTC	1 cut(s)	612
StyD4I	CCNGG	4 cut(s)	212, 307, 624, 1153
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	5 cut(s)	16, 124, 359, 537, 1056
TaqI	TCGA	5 cut(s)	10, 287, 681, 768, 1164
TasI	AATT	6 cut(s)	160, 254, 490, 690, 887, 941
TfiI	GAWTC	2 cut(s)	200, 412
Tru1I	TTAA	4 cut(s)	633, 747, 812, 1058
Tru9I	TTAA	4 cut(s)	633, 747, 812, 1058
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	6 cut(s)	29, 116, 398, 563, 788, 1024
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	9 cut(s)	420, 456, 559, 683, 768, 876, 900, 911, 1014
TspRI	CASTG	1 cut(s)	90
Van91I	CCANNNNNTGG	1 cut(s)	964
XapI	RAATTY	2 cut(s)	160, 254
XceI	RCATGY	1 cut(s)	381
XmiI	GTMKAC	1 cut(s)	1164
XspI	CTAG	3 cut(s)	141, 1028, 1131
Zsp2I	ATGCAT	1 cut(s)	885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.