Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006769

Physical Location & Seq

Genomic Coordinates Reverse (-)

11296097 .. 11300346

Gene Structure 4250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG133900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGATCCCCACGCTCGCCTCGATGACGATGACGATTTCGGAGGTGACTTTCCGGGAACTAGCGGTGCCCGCCGGTCAGATGCTGTGGTTAAGGATTATTTGTATGAGGCAAGAAAATTGTTGCTTGATCCAGCAATTCATGAAGAATTTACTCGTCTAAAGAATTTGGTTGAGGAGAAAGAAAAAAGATTGAAGCAGTTCCAGGAAGATGTCGCTGCCAATAATTTTACTCCAACAAGCAAGATGGGGAAACAGTTAATGGCTAAATGTAAGACCCTGCAAGAGGAAAATGAGGAGATCGGCAATGAAGCATCTGAGGGAAAGATGCATGAATTATCCATGAAACTTGCTTTGCAAAAGAACCAAAATGCAGAACTTAGAAGTCAATTTGAAGCATTGCACATGCATATGGAGGGCCTCACAAATGATGTGGAAAGATCAAATGAAATGGTGGTCATCATGCAAGAGAAGCTTGAACAGAAGGATAGTGAAATCAAAAGATTAAAGGACGAGCTAGAGCAGAAGAGCGTAATGGTGGAGGAGAAAATTGATCCAGCTTCTGATAATGGAAAATTCAGCGATGAAGTGATGGTATCTGGGGAAGCCAATGGCTCAGATGATAAAGATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0001510 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009506 GO:0009888 GO:0009987 GO:0010073 GO:0010468 GO:0016070 GO:0016071 GO:0016556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043484 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048507 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0071704 GO:0080009 GO:0080090 GO:0090304 GO:1901360 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Wtap

Protein Analysis

210

Amino Acids

23.92

Weight (kDa)

4.72

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Wtap	PF17098	36 - 151	8.3e-41	WTAP/Mum2p family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54170
fragaria_vesca	FvH4_5g05840 FvH4_5g05840 FvH4_5g05840 FvH4_5g05840
malus_domestica	MD06G1169900.v1.1
prunus_persica	Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1 Prupe.5G169400_v2.0.a1
pyrus_communis	pycom06g15130
rosa_chinensis	RchiOBHm_Chr3g0448991 RchiOBHm_Chr7g0192981
rosa_laevigata	RLG00000004305 RLG00000014553
rosa_multiflora	Rmu_sc0002040.1_g000066 Rmu_sc0027188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262480
rosa_rugosa	Rorug05G0014700 Rorug07G0007000 Rorug07G0007100 Rorug07G0007200
rosa_samantha	Rh7AG132000 Rh7BG132800 Rh7CG136000 Rh7DG133900
rosa_wichuraiana	Rw7G011260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AciI	CCGC	2 cut(s)	63, 70
AclWI	GGATC	3 cut(s)	12, 122, 545
AcsI	RAATTY	3 cut(s)	146, 163, 572
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	193, 392, 476
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	3 cut(s)	472, 514, 557
AluI	AGCT	3 cut(s)	472, 514, 557
AlwI	GGATC	3 cut(s)	12, 122, 545
AlwNI	CAGNNNCTG	2 cut(s)	83, 560
AoxI	GGCC	1 cut(s)	415
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	3 cut(s)	146, 163, 572
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	415
AsuC2I	CCSGG	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	70
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	2 cut(s)	238, 583
BciT130I	CCWGG	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	54
BfaI	CTAG	2 cut(s)	60, 515
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	2 cut(s)	54, 203
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	2 cut(s)	6, 67
BmrFI	CCNGG	2 cut(s)	54, 203
BmsI	GCATC	3 cut(s)	70, 315, 320
BpuMI	CCSGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse118I	RCCGGY	1 cut(s)	72
Bse3DI	GCAATG	2 cut(s)	310, 395
BseBI	CCWGG	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	2 cut(s)	310, 395
BseMII	CTCAG	2 cut(s)	306, 627
BseRI	GAGGAG	3 cut(s)	188, 308, 554
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	202
BshFI	GGCC	1 cut(s)	417
BshNI	GGYRCC	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	53, 73
BslI	CCNNNNNNNGG	1 cut(s)	283
BsnI	GGCC	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	5 cut(s)	4, 127, 297, 437, 550
BspACI	CCGC	2 cut(s)	63, 70
BspANI	GGCC	1 cut(s)	417
BspCNI	CTCAG	2 cut(s)	307, 626
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	2 cut(s)	6, 67
BspPI	GGATC	3 cut(s)	12, 122, 545
BspQI	GCTCTTC	1 cut(s)	518
BspT107I	GGYRCC	1 cut(s)	65
BsrDI	GCAATG	2 cut(s)	310, 395
BsrFI	RCCGGY	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	72
BssMI	GATC	5 cut(s)	4, 127, 297, 437, 550
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	518
BstC8I	GCNNGC	2 cut(s)	16, 70
BstDEI	CTNAG	3 cut(s)	315, 377, 613
BstENI	CCTNNNNNAGG	1 cut(s)	281
BstKTI	GATC	5 cut(s)	7, 130, 300, 440, 553
BstMBI	GATC	5 cut(s)	4, 127, 297, 437, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 469
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	2 cut(s)	52, 201
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	417
BtgZI	GCGATG	1 cut(s)	594
Cac8I	GCNNGC	2 cut(s)	16, 70
CaiI	CAGNNNCTG	2 cut(s)	83, 560
CciI	TCATGA	1 cut(s)	139
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	415
CspCI	CAANNNNNGTGG	2 cut(s)	411, 446
CviAII	CATG	5 cut(s)	140, 329, 340, 403, 460
CviJI	RGCY	7 cut(s)	263, 417, 472, 514, 557, 605, 612
CviKI_1	RGCY	7 cut(s)	263, 417, 472, 514, 557, 605, 612
DdeI	CTNAG	3 cut(s)	315, 377, 613
DpnI	GATC	5 cut(s)	6, 129, 299, 439, 552
DpnII	GATC	5 cut(s)	4, 127, 297, 437, 550
Eam1104I	CTCTTC	1 cut(s)	518
EarI	CTCTTC	1 cut(s)	518
EcoNI	CCTNNNNNAGG	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	201
EcoT22I	ATGCAT	2 cut(s)	330, 408
FaeI	CATG	5 cut(s)	143, 332, 343, 406, 463
FaiI	YATR	8 cut(s)	105, 141, 330, 341, 404, 408, 410, 461
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FatI	CATG	5 cut(s)	139, 328, 339, 402, 459
FauI	CCCGC	1 cut(s)	77
FauNDI	CATATG	1 cut(s)	408
Fnu4HI	GCNGC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	2 cut(s)	60, 515
GluI	GCNGC	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	417
HapII	CCGG	2 cut(s)	53, 73
Hin1II	CATG	5 cut(s)	143, 332, 343, 406, 463
HindIII	AAGCTT	1 cut(s)	470
HpaII	CCGG	2 cut(s)	53, 73
HphI	GGTGA	1 cut(s)	56
Hpy188I	TCNGA	5 cut(s)	41, 79, 316, 562, 616
Hpy188III	TCNNGA	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4V	TGCA	7 cut(s)	280, 328, 355, 371, 400, 406, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 469
HpyF3I	CTNAG	3 cut(s)	315, 377, 613
Hsp92II	CATG	5 cut(s)	143, 332, 343, 406, 463
Kzo9I	GATC	5 cut(s)	4, 127, 297, 437, 550
LguI	GCTCTTC	1 cut(s)	518
LpnPI	CCDG	8 cut(s)	66, 86, 144, 188, 215, 290, 567, 582
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	3 cut(s)	70, 315, 320
MaeI	CTAG	2 cut(s)	60, 515
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	5 cut(s)	6, 129, 299, 439, 552
MboI	GATC	5 cut(s)	4, 127, 297, 437, 550
MboII	GAAGA	3 cut(s)	155, 218, 535
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	9 cut(s)	116, 135, 146, 163, 223, 332, 386, 546, 572
MmeI	TCCRAC	1 cut(s)	257
Mph1103I	ATGCAT	2 cut(s)	330, 408
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	3 cut(s)	90, 257, 503
MslI	CAYNNNNRTG	1 cut(s)	407
MspI	CCGG	2 cut(s)	53, 73
MspR9I	CCNGG	2 cut(s)	54, 203
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	69, 469
NciI	CCSGG	1 cut(s)	54
NdeI	CATATG	1 cut(s)	408
NdeII	GATC	5 cut(s)	4, 127, 297, 437, 550
NlaIII	CATG	5 cut(s)	143, 332, 343, 406, 463
NlaIV	GGNNCC	2 cut(s)	6, 67
NmuCI	GTSAC	1 cut(s)	44
NsiI	ATGCAT	2 cut(s)	330, 408
NspI	RCATGY	1 cut(s)	406
PagI	TCATGA	1 cut(s)	139
PciSI	GCTCTTC	1 cut(s)	518
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	197
PfoI	TCCNGGA	2 cut(s)	52, 201
PkrI	GCNGC	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	6, 67
PspPI	GGNCC	1 cut(s)	415
PstNI	CAGNNNCTG	2 cut(s)	83, 560
PsuI	RGATCY	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	407
SapI	GCTCTTC	1 cut(s)	518
SaqAI	TTAA	3 cut(s)	90, 257, 503
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	5 cut(s)	4, 127, 297, 437, 550
Sau96I	GGNCC	1 cut(s)	415
ScrFI	CCNGG	2 cut(s)	54, 203
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	4 cut(s)	46, 474, 516, 559
SfaNI	GCATC	3 cut(s)	70, 315, 320
SmiMI	CAYNNNNRTG	1 cut(s)	407
Sse9I	AATT	9 cut(s)	116, 135, 146, 163, 223, 332, 386, 546, 572
SsiI	CCGC	2 cut(s)	63, 70
SspMI	CTAG	2 cut(s)	60, 515
StyD4I	CCNGG	2 cut(s)	52, 201
TaaI	ACNGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	21
TasI	AATT	9 cut(s)	116, 135, 146, 163, 223, 332, 386, 546, 572
Tru1I	TTAA	3 cut(s)	90, 257, 503
Tru9I	TTAA	3 cut(s)	90, 257, 503
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	7 cut(s)	128, 156, 321, 345, 356, 459, 597
XagI	CCTNNNNNAGG	1 cut(s)	281
XapI	RAATTY	3 cut(s)	146, 163, 572
XceI	RCATGY	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	2 cut(s)	60, 515
Zsp2I	ATGCAT	2 cut(s)	330, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.